FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6737, 97 aa
  1>>>pF1KB6737 97 - 97 aa - 97 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.4881+/-0.000499; mu= 13.7927+/- 0.030
 mean_var=57.9393+/-11.215, 0's: 0 Z-trim(114.6): 49  B-trim: 83 in 1/51
 Lambda= 0.168495
 statistics sampled from 15154 (15205) to 15154 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.837), E-opt: 0.2 (0.467), width:  16
 Scan time:  1.360

The best scores are:                                      opt bits E(32554)
CCDS11279.1 CCL11 gene_id:6356|Hs108|chr17         (  97)  658 166.7   2e-42
CCDS11277.1 CCL2 gene_id:6347|Hs108|chr17          (  99)  462 119.1 4.4e-28
CCDS11280.1 CCL8 gene_id:6355|Hs108|chr17          (  99)  456 117.6 1.2e-27
CCDS11278.1 CCL7 gene_id:6354|Hs108|chr17          (  99)  449 115.9 3.9e-27
CCDS11281.1 CCL13 gene_id:6357|Hs108|chr17         (  98)  406 105.5 5.5e-24
CCDS11308.1 CCL4 gene_id:6351|Hs108|chr17          (  92)  240 65.1 7.3e-12
CCDS11300.1 CCL5 gene_id:6352|Hs108|chr17          (  91)  238 64.6   1e-11
CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17      (  93)  231 62.9 3.4e-11


>>CCDS11279.1 CCL11 gene_id:6356|Hs108|chr17              (97 aa)
 initn: 658 init1: 658 opt: 658  Z-score: 875.3  bits: 166.7 E(32554): 2e-42
Smith-Waterman score: 658; 100.0% identity (100.0% similar) in 97 aa overlap (1-97:1-97)

               10        20        30        40        50        60
pF1KB6 MKVSAALLWLLLIAAAFSPQGLAGPASVPTTCCFNLANRKIPLQRLESYRRITSGKCPQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MKVSAALLWLLLIAAAFSPQGLAGPASVPTTCCFNLANRKIPLQRLESYRRITSGKCPQK
               10        20        30        40        50        60

               70        80        90       
pF1KB6 AVIFKTKLAKDICADPKKKWVQDSMKYLDQKSPTPKP
       :::::::::::::::::::::::::::::::::::::
CCDS11 AVIFKTKLAKDICADPKKKWVQDSMKYLDQKSPTPKP
               70        80        90       

>>CCDS11277.1 CCL2 gene_id:6347|Hs108|chr17               (99 aa)
 initn: 475 init1: 358 opt: 462  Z-score: 617.7  bits: 119.1 E(32554): 4.4e-28
Smith-Waterman score: 462; 70.4% identity (88.8% similar) in 98 aa overlap (1-96:1-98)

               10        20          30        40        50        
pF1KB6 MKVSAALLWLLLIAAAFSPQGLAGPASV--PTTCCFNLANRKIPLQRLESYRRITSGKCP
       :::::::: ::::::.: ::::: : ..  :.:::.:..:::: .::: :::::::.:::
CCDS11 MKVSAALLCLLLIAATFIPQGLAQPDAINAPVTCCYNFTNRKISVQRLASYRRITSSKCP
               10        20        30        40        50        60

       60        70        80        90       
pF1KB6 QKAVIFKTKLAKDICADPKKKWVQDSMKYLDQKSPTPKP
       ..:::::: .::.::::::.::::::: .::... ::: 
CCDS11 KEAVIFKTIVAKEICADPKQKWVQDSMDHLDKQTQTPKT
               70        80        90         

>>CCDS11280.1 CCL8 gene_id:6355|Hs108|chr17               (99 aa)
 initn: 349 init1: 349 opt: 456  Z-score: 609.8  bits: 117.6 E(32554): 1.2e-27
Smith-Waterman score: 456; 68.7% identity (86.9% similar) in 99 aa overlap (1-97:1-99)

               10        20          30        40        50        
pF1KB6 MKVSAALLWLLLIAAAFSPQGLAGP--ASVPTTCCFNLANRKIPLQRLESYRRITSGKCP
       :::::::: :::.::.::::::: :  .:.: :::::. :::::.:::::: :::. .::
CCDS11 MKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLESYTRITNIQCP
               10        20        30        40        50        60

       60        70        80        90       
pF1KB6 QKAVIFKTKLAKDICADPKKKWVQDSMKYLDQKSPTPKP
       ..::::::: .:..:::::..::.::::.:::   . ::
CCDS11 KEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP
               70        80        90         

>>CCDS11278.1 CCL7 gene_id:6354|Hs108|chr17               (99 aa)
 initn: 469 init1: 342 opt: 449  Z-score: 600.6  bits: 115.9 E(32554): 3.9e-27
Smith-Waterman score: 449; 69.4% identity (85.7% similar) in 98 aa overlap (1-96:1-98)

               10        20          30        40        50        
pF1KB6 MKVSAALLWLLLIAAAFSPQGLAGPASV--PTTCCFNLANRKIPLQRLESYRRITSGKCP
       ::.::::: ::: :::::::::: :...   ::::. . :.::: :::::::: ::..::
CCDS11 MKASAALLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLESYRRTTSSHCP
               10        20        30        40        50        60

       60        70        80        90       
pF1KB6 QKAVIFKTKLAKDICADPKKKWVQDSMKYLDQKSPTPKP
       ..:::::::: :.::::: .::::: ::.::.:. ::: 
CCDS11 REAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQTPKL
               70        80        90         

>>CCDS11281.1 CCL13 gene_id:6357|Hs108|chr17              (98 aa)
 initn: 411 init1: 214 opt: 406  Z-score: 544.2  bits: 105.5 E(32554): 5.5e-24
Smith-Waterman score: 406; 64.3% identity (87.8% similar) in 98 aa overlap (1-96:1-97)

               10        20          30        40        50        
pF1KB6 MKVSAALLWLLLIAAAFSPQGLAGPAS--VPTTCCFNLANRKIPLQRLESYRRITSGKCP
       :::::.:: :::..:::.::::: : .  ::.::::.....:: ::::.::  ::...::
CCDS11 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYV-ITTSRCP
               10        20        30        40        50          

       60        70        80        90       
pF1KB6 QKAVIFKTKLAKDICADPKKKWVQDSMKYLDQKSPTPKP
       ::::::.:::.:.::::::.::::. ::.: .:. : : 
CCDS11 QKAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
      60        70        80        90        

>>CCDS11308.1 CCL4 gene_id:6351|Hs108|chr17               (92 aa)
 initn: 245 init1: 139 opt: 240  Z-score: 326.5  bits: 65.1 E(32554): 7.3e-12
Smith-Waterman score: 240; 40.7% identity (75.8% similar) in 91 aa overlap (1-89:1-90)

               10        20          30        40        50        
pF1KB6 MKVSAALLWLLLIAAAFSPQGLAGP--ASVPTTCCFNLANRKIPLQRLESYRRITSGKCP
       ::. ...: ::...:::   .:..:  .. ::.:::. . ::.: . . .: . ::. : 
CCDS11 MKLCVTVLSLLMLVAAFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVDYYE-TSSLCS
               10        20        30        40        50          

       60        70        80        90       
pF1KB6 QKAVIFKTKLAKDICADPKKKWVQDSMKYLDQKSPTPKP
       : ::.:.:: .:..::::...:::. .  :.        
CCDS11 QPAVVFQTKRSKQVCADPSESWVQEYVYDLELN      
      60        70        80        90        

>>CCDS11300.1 CCL5 gene_id:6352|Hs108|chr17               (91 aa)
 initn: 252 init1: 183 opt: 238  Z-score: 323.9  bits: 64.6 E(32554): 1e-11
Smith-Waterman score: 238; 43.3% identity (68.9% similar) in 90 aa overlap (1-89:1-89)

               10        20        30         40        50         
pF1KB6 MKVSAALLWLLLIAAAFSPQGLAGPASVPTT-CCFNLANRKIPLQRLESYRRITSGKCPQ
       :::::: : ..:::.:.   . :.: :  :: :::    : .:  ... :   ::::: .
CCDS11 MKVSAAALAVILIATALCAPASASPYSSDTTPCCFAYIARPLPRAHIKEYFY-TSGKCSN
               10        20        30        40        50          

      60        70        80        90       
pF1KB6 KAVIFKTKLAKDICADPKKKWVQDSMKYLDQKSPTPKP
        ::.: :.  ...::.:.::::.. .. :.        
CCDS11 PAVVFVTRKNRQVCANPEKKWVREYINSLEMS      
      60        70        80        90       

>>CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17           (93 aa)
 initn: 186 init1: 121 opt: 231  Z-score: 314.6  bits: 62.9 E(32554): 3.4e-11
Smith-Waterman score: 231; 40.7% identity (75.8% similar) in 91 aa overlap (1-89:1-90)

               10        20          30        40        50        
pF1KB6 MKVSAALLWLLLIAAAFSPQGLAGP--ASVPTTCCFNLANRKIPLQRLESYRRITSGKCP
       :.::.: : .:: . :.  : :..:  :..::.:::. ..:.:: . . .: . ::..: 
CCDS32 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFE-TSSQCS
               10        20        30        40        50          

       60        70        80        90       
pF1KB6 QKAVIFKTKLAKDICADPKKKWVQDSMKYLDQKSPTPKP
       . .::: :: ....::::...:::  .. :.        
CCDS32 KPSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA     
      60        70        80        90        




97 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:42:33 2016 done: Fri Nov  4 23:42:34 2016
 Total Scan time:  1.360 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]