Result of FASTA (omim) for pF1KB6733
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6733, 95 aa
  1>>>pF1KB6733 95 - 95 aa - 95 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3677+/-0.000295; mu= 8.2606+/- 0.019
 mean_var=56.2499+/-11.274, 0's: 0 Z-trim(116.0): 10  B-trim: 0 in 0/52
 Lambda= 0.171007
 statistics sampled from 26822 (26831) to 26822 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.727), E-opt: 0.2 (0.315), width:  16
 Scan time:  3.440

The best scores are:                                      opt bits E(85289)
NP_008868 (OMIM: 603042) small ubiquitin-related m (  95)  636 164.5 2.4e-41
NP_008867 (OMIM: 602231) small ubiquitin-related m ( 103)  599 155.4 1.4e-38
NP_001002255 (OMIM: 600320,608829) small ubiquitin (  95)  533 139.1 1.1e-33
NP_001005849 (OMIM: 603042) small ubiquitin-relate (  71)  339 91.2 2.1e-19
NP_001005781 (OMIM: 601912,613705) small ubiquitin ( 101)  291 79.4   1e-15
NP_003343 (OMIM: 601912,613705) small ubiquitin-re ( 101)  291 79.4   1e-15
NP_001273345 (OMIM: 602231) small ubiquitin-relate ( 141)  291 79.4 1.4e-15
NP_001005782 (OMIM: 601912,613705) small ubiquitin (  76)  254 70.2 4.5e-13
NP_116204 (OMIM: 614525) NFATC2-interacting protei ( 419)  169 49.4 4.4e-06


>>NP_008868 (OMIM: 603042) small ubiquitin-related modif  (95 aa)
 initn: 636 init1: 636 opt: 636  Z-score: 863.4  bits: 164.5 E(85289): 2.4e-41
Smith-Waterman score: 636; 100.0% identity (100.0% similar) in 95 aa overlap (1-95:1-95)

               10        20        30        40        50        60
pF1KB6 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF
               10        20        30        40        50        60

               70        80        90     
pF1KB6 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVY
       :::::::::::::::::::::::::::::::::::
NP_008 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVY
               70        80        90     

>>NP_008867 (OMIM: 602231) small ubiquitin-related modif  (103 aa)
 initn: 537 init1: 537 opt: 599  Z-score: 813.5  bits: 155.4 E(85289): 1.4e-38
Smith-Waterman score: 599; 96.8% identity (98.9% similar) in 94 aa overlap (1-94:1-93)

               10        20        30        40        50        60
pF1KB6 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF
       :..::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
NP_008 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF
               10         20        30        40        50         

               70        80        90              
pF1KB6 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVY         
       ::::::::::::::::::::::::::::::::::          
NP_008 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVPESSLAGHSF
      60        70        80        90       100   

>>NP_001002255 (OMIM: 600320,608829) small ubiquitin-rel  (95 aa)
 initn: 533 init1: 533 opt: 533  Z-score: 726.1  bits: 139.1 E(85289): 1.1e-33
Smith-Waterman score: 533; 85.3% identity (92.6% similar) in 95 aa overlap (1-95:1-95)

               10        20        30        40        50        60
pF1KB6 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF
       ::.::: : ::::::.::::::::::::::::::::.:::::::::::: .:::..::::
NP_001 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRF
               10        20        30        40        50        60

               70        80        90     
pF1KB6 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVY
       :: ::::. :: ::::::::::::::::: :::::
NP_001 RFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGVY
               70        80        90     

>>NP_001005849 (OMIM: 603042) small ubiquitin-related mo  (71 aa)
 initn: 346 init1: 339 opt: 339  Z-score: 469.5  bits: 91.2 E(85289): 2.1e-19
Smith-Waterman score: 413; 74.7% identity (74.7% similar) in 95 aa overlap (1-95:1-71)

               10        20        30        40        50        60
pF1KB6 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF
       :::::::::::::::::::::::::::::::::::::::::::::::::::         
NP_001 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ---------
               10        20        30        40        50          

               70        80        90     
pF1KB6 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVY
                      ::::::::::::::::::::
NP_001 ---------------LEMEDEDTIDVFQQQTGGVY
                             60        70 

>>NP_001005781 (OMIM: 601912,613705) small ubiquitin-rel  (101 aa)
 initn: 286 init1: 286 opt: 291  Z-score: 403.0  bits: 79.4 E(85289): 1e-15
Smith-Waterman score: 291; 45.4% identity (78.4% similar) in 97 aa overlap (1-93:1-97)

               10            20        30        40        50      
pF1KB6 MADEKPKEGVKT----ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMR
       :.:.. : ...     .....:.::: :::.: ..::.:  : :.:: ..::.:::. : 
NP_001 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN
               10        20        30        40        50        60

         60        70        80        90       
pF1KB6 QIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVY  
       ..:: :.:: : .. :: .: ::.::.:.:.:.::::    
NP_001 SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHSTV
               70        80        90       100 

>>NP_003343 (OMIM: 601912,613705) small ubiquitin-relate  (101 aa)
 initn: 286 init1: 286 opt: 291  Z-score: 403.0  bits: 79.4 E(85289): 1e-15
Smith-Waterman score: 291; 45.4% identity (78.4% similar) in 97 aa overlap (1-93:1-97)

               10            20        30        40        50      
pF1KB6 MADEKPKEGVKT----ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMR
       :.:.. : ...     .....:.::: :::.: ..::.:  : :.:: ..::.:::. : 
NP_003 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN
               10        20        30        40        50        60

         60        70        80        90       
pF1KB6 QIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVY  
       ..:: :.:: : .. :: .: ::.::.:.:.:.::::    
NP_003 SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHSTV
               70        80        90       100 

>>NP_001273345 (OMIM: 602231) small ubiquitin-related mo  (141 aa)
 initn: 291 init1: 291 opt: 291  Z-score: 400.6  bits: 79.4 E(85289): 1.4e-15
Smith-Waterman score: 491; 69.3% identity (69.3% similar) in 127 aa overlap (6-94:6-131)

               10        20        30        40        50          
pF1KB6 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ---------
            ::::::::: ::::::::::::::::::::::::::::::::::::         
NP_001 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQVRHLAPPQS
               10         20        30        40        50         

                                           60        70        80  
pF1KB6 -----------------------------GLSMRQIRFRFDGQPINETDTPAQLEMEDED
                                    :::::::::::::::::::::::::::::::
NP_001 LPVCALVLCVPGIPRARASRGWTQMQLPEGLSMRQIRFRFDGQPINETDTPAQLEMEDED
      60        70        80        90       100       110         

             90              
pF1KB6 TIDVFQQQTGGVY         
       ::::::::::::          
NP_001 TIDVFQQQTGGVPESSLAGHSF
     120       130       140 

>>NP_001005782 (OMIM: 601912,613705) small ubiquitin-rel  (76 aa)
 initn: 254 init1: 254 opt: 254  Z-score: 355.7  bits: 70.2 E(85289): 4.5e-13
Smith-Waterman score: 254; 50.0% identity (80.6% similar) in 72 aa overlap (22-93:1-72)

               10        20        30        40        50        60
pF1KB6 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF
                            .. ::.: ..::.:  : :.:: ..::.:::. : ..::
NP_001                      MSDQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRF
                                    10        20        30         

               70        80        90       
pF1KB6 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVY  
        :.:: : .. :: .: ::.::.:.:.:.::::    
NP_001 LFEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHSTV
      40        50        60        70      

>>NP_116204 (OMIM: 614525) NFATC2-interacting protein [H  (419 aa)
 initn: 156 init1: 132 opt: 169  Z-score: 230.1  bits: 49.4 E(85289): 4.4e-06
Smith-Waterman score: 169; 36.4% identity (74.0% similar) in 77 aa overlap (12-87:342-418)

                                  10        20         30        40
pF1KB6                    MADEKPKEGVKTENNDHINLKVAGQDG-SVVQFKIKRHTPL
                                     ::......:.: :..  .... ...: .::
NP_116 ELSPTATPRTLKLGVADIIDCVVLTSSPEATETSQQLQLRVQGKEKHQTLEVSLSRDSPL
             320       330       340       350       360       370 

               50        60        70        80        90     
pF1KB6 SKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVY
       . ::. : : .::: :.. : :::  ..  . ::.: ::. : :.:.        
NP_116 KTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVWG       
             380       390       400       410                




95 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:35:20 2016 done: Fri Nov  4 15:35:21 2016
 Total Scan time:  3.440 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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