Result of FASTA (omim) for
pF1KB6732
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6732, 130 aa
1>>>pF1KB6732 130 - 130 aa - 130 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7585+/-0.000312; mu= 14.4012+/- 0.019
mean_var=69.7646+/-14.792, 0's: 0 Z-trim(117.7): 32 B-trim: 579 in 1/53
Lambda= 0.153552
statistics sampled from 29914 (29961) to 29914 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.351), width: 16
Scan time: 4.440
The best scores are: opt bits E(85289)
NP_002029 (OMIM: 147572) interferon alpha-inducibl ( 130) 840 194.1 5.2e-50
NP_075010 (OMIM: 147572) interferon alpha-inducibl ( 134) 822 190.2 8.4e-49
NP_075011 (OMIM: 147572) interferon alpha-inducibl ( 138) 814 188.4 2.9e-48
NP_114425 (OMIM: 611319) interferon alpha-inducibl ( 130) 268 67.4 7.2e-12
NP_660292 (OMIM: 611320) interferon alpha-inducibl ( 104) 249 63.1 1.1e-10
XP_011534707 (OMIM: 611320) PREDICTED: interferon ( 104) 249 63.1 1.1e-10
NP_996832 (OMIM: 611320) interferon alpha-inducibl ( 104) 249 63.1 1.1e-10
XP_016876450 (OMIM: 611320) PREDICTED: interferon ( 124) 249 63.2 1.3e-10
XP_005267371 (OMIM: 611320) PREDICTED: interferon ( 129) 243 61.9 3.3e-10
XP_011534709 (OMIM: 611320) PREDICTED: interferon ( 103) 241 61.4 3.8e-10
XP_011534708 (OMIM: 611320) PREDICTED: interferon ( 103) 241 61.4 3.8e-10
XP_016876451 (OMIM: 611320) PREDICTED: interferon ( 113) 237 60.5 7.6e-10
NP_001275885 (OMIM: 600009) interferon alpha-induc ( 122) 237 60.5 8.1e-10
NP_001275881 (OMIM: 600009) interferon alpha-induc ( 122) 237 60.5 8.1e-10
NP_001123552 (OMIM: 600009) interferon alpha-induc ( 122) 237 60.5 8.1e-10
NP_001275883 (OMIM: 600009) interferon alpha-induc ( 119) 231 59.2 2e-09
NP_001275924 (OMIM: 600009) interferon alpha-induc ( 119) 231 59.2 2e-09
NP_001275887 (OMIM: 600009) interferon alpha-induc ( 119) 231 59.2 2e-09
NP_001275886 (OMIM: 600009) interferon alpha-induc ( 119) 231 59.2 2e-09
NP_005523 (OMIM: 600009) interferon alpha-inducibl ( 119) 231 59.2 2e-09
NP_001275889 (OMIM: 600009) interferon alpha-induc ( 74) 217 55.9 1.2e-08
NP_001275888 (OMIM: 600009) interferon alpha-induc ( 79) 217 55.9 1.3e-08
XP_016876452 (OMIM: 611320) PREDICTED: interferon ( 112) 206 53.6 8.8e-08
>>NP_002029 (OMIM: 147572) interferon alpha-inducible pr (130 aa)
initn: 840 init1: 840 opt: 840 Z-score: 1018.9 bits: 194.1 E(85289): 5.2e-50
Smith-Waterman score: 840; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KB6 MRQKAVSLFLCYLLLFTCSGVEAGKKKCSESSDSGSGFWKALTFMAVGGGLAVAGLPALG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MRQKAVSLFLCYLLLFTCSGVEAGKKKCSESSDSGSGFWKALTFMAVGGGLAVAGLPALG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 FTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVVIGNIGALMGYATH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 FTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVVIGNIGALMGYATH
70 80 90 100 110 120
130
pF1KB6 KYLDSEEDEE
::::::::::
NP_002 KYLDSEEDEE
130
>>NP_075010 (OMIM: 147572) interferon alpha-inducible pr (134 aa)
initn: 700 init1: 700 opt: 822 Z-score: 997.1 bits: 190.2 E(85289): 8.4e-49
Smith-Waterman score: 822; 97.0% identity (97.0% similar) in 134 aa overlap (1-130:1-134)
10 20 30 40 50
pF1KB6 MRQKAVSLFLCYLLLFTCSGVEAG----KKKCSESSDSGSGFWKALTFMAVGGGLAVAGL
:::::::::::::::::::::::: ::::::::::::::::::::::::::::::::
NP_075 MRQKAVSLFLCYLLLFTCSGVEAGENAGKKKCSESSDSGSGFWKALTFMAVGGGLAVAGL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 PALGFTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVVIGNIGALMG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_075 PALGFTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVVIGNIGALMG
70 80 90 100 110 120
120 130
pF1KB6 YATHKYLDSEEDEE
::::::::::::::
NP_075 YATHKYLDSEEDEE
130
>>NP_075011 (OMIM: 147572) interferon alpha-inducible pr (138 aa)
initn: 702 init1: 702 opt: 814 Z-score: 987.4 bits: 188.4 E(85289): 2.9e-48
Smith-Waterman score: 814; 94.2% identity (94.2% similar) in 138 aa overlap (1-130:1-138)
10 20 30 40 50
pF1KB6 MRQKAVSLFLCYLLLFTCSGVEAG--------KKKCSESSDSGSGFWKALTFMAVGGGLA
:::::::::::::::::::::::: ::::::::::::::::::::::::::::
NP_075 MRQKAVSLFLCYLLLFTCSGVEAGENAGKDAGKKKCSESSDSGSGFWKALTFMAVGGGLA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 VAGLPALGFTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVVIGNIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_075 VAGLPALGFTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVVIGNIG
70 80 90 100 110 120
120 130
pF1KB6 ALMGYATHKYLDSEEDEE
::::::::::::::::::
NP_075 ALMGYATHKYLDSEEDEE
130
>>NP_114425 (OMIM: 611319) interferon alpha-inducible pr (130 aa)
initn: 326 init1: 207 opt: 268 Z-score: 334.0 bits: 67.4 E(85289): 7.2e-12
Smith-Waterman score: 268; 57.0% identity (86.1% similar) in 79 aa overlap (46-116:9-87)
20 30 40 50 60 70
pF1KB6 FTCSGVEAGKKKCSESSDSGSGFWKALTFMAVGGGLAVAGLP----ALGFTGAGIAANSV
::::.:::...: :.:::::::::.:.
NP_114 MMKRAAAAAVGGALAVGAVPVVLSAMGFTGAGIAASSI
10 20 30
80 90 100 110 120
pF1KB6 AASLMSWSAILNGGGVPAGGLVATLQSLGAGG----SSVVIGNIGALMGYATHKYLDSEE
::..:: .:: ::::: ::.:::::::.::.: :.......:...:
NP_114 AAKMMSAAAIANGGGVSAGSLVATLQSVGAAGLSTSSNILLASVGSVLGACLGNSPSSSL
40 50 60 70 80 90
130
pF1KB6 DEE
NP_114 PAEPEAKEDEARENVPQGEPPKPPLKSEKHEE
100 110 120 130
>>NP_660292 (OMIM: 611320) interferon alpha-inducible pr (104 aa)
initn: 319 init1: 249 opt: 249 Z-score: 312.6 bits: 63.1 E(85289): 1.1e-10
Smith-Waterman score: 249; 49.5% identity (75.3% similar) in 93 aa overlap (33-125:8-100)
10 20 30 40 50 60
pF1KB6 QKAVSLFLCYLLLFTCSGVEAGKKKCSESSDSGSGFWKALTFMAVGGGLAVAGLPALGFT
::: . :.. .:. : ....: :.:::
NP_660 MGKESGWDSGRAAVAAVVGGVVAVGTVLVALSAMGFT
10 20 30
70 80 90 100 110 120
pF1KB6 GAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVVIGNIGALMGYATHKY
..::::.:.::..:: .:: ::::: ::.::: :::.::.: ::. ::.. : : .
NP_660 SVGIAASSIAAKMMSTAAIANGGGVAAGSLVAILQSVGAAGLSVTSKVIGGFAGTALGAW
40 50 60 70 80 90
130
pF1KB6 LDSEEDEE
: :
NP_660 LGSPPSS
100
>>XP_011534707 (OMIM: 611320) PREDICTED: interferon alph (104 aa)
initn: 319 init1: 249 opt: 249 Z-score: 312.6 bits: 63.1 E(85289): 1.1e-10
Smith-Waterman score: 249; 49.5% identity (75.3% similar) in 93 aa overlap (33-125:8-100)
10 20 30 40 50 60
pF1KB6 QKAVSLFLCYLLLFTCSGVEAGKKKCSESSDSGSGFWKALTFMAVGGGLAVAGLPALGFT
::: . :.. .:. : ....: :.:::
XP_011 MGKESGWDSGRAAVAAVVGGVVAVGTVLVALSAMGFT
10 20 30
70 80 90 100 110 120
pF1KB6 GAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVVIGNIGALMGYATHKY
..::::.:.::..:: .:: ::::: ::.::: :::.::.: ::. ::.. : : .
XP_011 SVGIAASSIAAKMMSTAAIANGGGVAAGSLVAILQSVGAAGLSVTSKVIGGFAGTALGAW
40 50 60 70 80 90
130
pF1KB6 LDSEEDEE
: :
XP_011 LGSPPSS
100
>>NP_996832 (OMIM: 611320) interferon alpha-inducible pr (104 aa)
initn: 319 init1: 249 opt: 249 Z-score: 312.6 bits: 63.1 E(85289): 1.1e-10
Smith-Waterman score: 249; 49.5% identity (75.3% similar) in 93 aa overlap (33-125:8-100)
10 20 30 40 50 60
pF1KB6 QKAVSLFLCYLLLFTCSGVEAGKKKCSESSDSGSGFWKALTFMAVGGGLAVAGLPALGFT
::: . :.. .:. : ....: :.:::
NP_996 MGKESGWDSGRAAVAAVVGGVVAVGTVLVALSAMGFT
10 20 30
70 80 90 100 110 120
pF1KB6 GAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVVIGNIGALMGYATHKY
..::::.:.::..:: .:: ::::: ::.::: :::.::.: ::. ::.. : : .
NP_996 SVGIAASSIAAKMMSTAAIANGGGVAAGSLVAILQSVGAAGLSVTSKVIGGFAGTALGAW
40 50 60 70 80 90
130
pF1KB6 LDSEEDEE
: :
NP_996 LGSPPSS
100
>>XP_016876450 (OMIM: 611320) PREDICTED: interferon alph (124 aa)
initn: 319 init1: 249 opt: 249 Z-score: 311.6 bits: 63.2 E(85289): 1.3e-10
Smith-Waterman score: 249; 49.5% identity (75.3% similar) in 93 aa overlap (33-125:28-120)
10 20 30 40 50 60
pF1KB6 QKAVSLFLCYLLLFTCSGVEAGKKKCSESSDSGSGFWKALTFMAVGGGLAVAGLPALGFT
::: . :.. .:. : ....: :.:::
XP_016 MQKVEVQESEWRLTEAKGPTMGKESGWDSGRAAVAAVVGGVVAVGTVLVALSAMGFT
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 GAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVVIGNIGALMGYATHKY
..::::.:.::..:: .:: ::::: ::.::: :::.::.: ::. ::.. : : .
XP_016 SVGIAASSIAAKMMSTAAIANGGGVAAGSLVAILQSVGAAGLSVTSKVIGGFAGTALGAW
60 70 80 90 100 110
130
pF1KB6 LDSEEDEE
: :
XP_016 LGSPPSS
120
>>XP_005267371 (OMIM: 611320) PREDICTED: interferon alph (129 aa)
initn: 280 init1: 216 opt: 243 Z-score: 304.2 bits: 61.9 E(85289): 3.3e-10
Smith-Waterman score: 243; 43.8% identity (71.4% similar) in 105 aa overlap (21-125:21-125)
10 20 30 40 50 60
pF1KB6 MRQKAVSLFLCYLLLFTCSGVEAGKKKCSESSDSGSGFWKALTFMAVGGGLAVAGLPALG
: : . . . ..: . :.. .:. : ....: :.:
XP_005 MFLPALRAQHNSGGPGMLCPVLQGAQPQGWAEETGRAAVAAVVGGVVAVGTVLVALSAMG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 FTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVVIGNIGALMGYATH
::..::::.:.::..:: .:: ::::: ::.::: :::.::.: ::. ::.. : :
XP_005 FTSVGIAASSIAAKMMSTAAIANGGGVAAGSLVAILQSVGAAGLSVTSKVIGGFAGTALG
70 80 90 100 110 120
130
pF1KB6 KYLDSEEDEE
.: :
XP_005 AWLGSPPSS
>>XP_011534709 (OMIM: 611320) PREDICTED: interferon alph (103 aa)
initn: 280 init1: 216 opt: 241 Z-score: 303.0 bits: 61.4 E(85289): 3.8e-10
Smith-Waterman score: 241; 50.0% identity (74.4% similar) in 90 aa overlap (40-125:10-99)
10 20 30 40 50 60
pF1KB6 LCYLLLFTCSGVEAGKKKCSESSDSGSGFWKALTFMAVGG----GLAVAGLPALGFTGAG
.: . .::: : ....: :.:::..:
XP_011 MVRLDISEGRAAVAAVVGGVVAVGTVLVALSAMGFTSVG
10 20 30
70 80 90 100 110 120
pF1KB6 IAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVVIGNIGALMGYATHKYLDS
:::.:.::..:: .:: ::::: ::.::: :::.::.: ::. ::.. : : .: :
XP_011 IAASSIAAKMMSTAAIANGGGVAAGSLVAILQSVGAAGLSVTSKVIGGFAGTALGAWLGS
40 50 60 70 80 90
130
pF1KB6 EEDEE
XP_011 PPSS
100
130 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 23:41:06 2016 done: Fri Nov 4 23:41:06 2016
Total Scan time: 4.440 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]