FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6732, 130 aa
  1>>>pF1KB6732 130 - 130 aa - 130 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2206+/-0.000662; mu= 11.5950+/- 0.040
 mean_var=67.5096+/-13.981, 0's: 0 Z-trim(111.3): 20  B-trim: 728 in 1/51
 Lambda= 0.156096
 statistics sampled from 12237 (12253) to 12237 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.376), width:  16
 Scan time:  1.460

The best scores are:                                      opt bits E(32554)
CCDS306.1 IFI6 gene_id:2537|Hs108|chr1             ( 130)  840 197.1 2.5e-51
CCDS307.1 IFI6 gene_id:2537|Hs108|chr1             ( 134)  822 193.1 4.3e-50
CCDS308.1 IFI6 gene_id:2537|Hs108|chr1             ( 138)  814 191.3 1.5e-49
CCDS9920.1 IFI27L2 gene_id:83982|Hs108|chr14       ( 130)  268 68.3 1.5e-12
CCDS9919.1 IFI27L1 gene_id:122509|Hs108|chr14      ( 104)  249 64.0 2.4e-11


>>CCDS306.1 IFI6 gene_id:2537|Hs108|chr1                  (130 aa)
 initn: 840 init1: 840 opt: 840  Z-score: 1034.9  bits: 197.1 E(32554): 2.5e-51
Smith-Waterman score: 840; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KB6 MRQKAVSLFLCYLLLFTCSGVEAGKKKCSESSDSGSGFWKALTFMAVGGGLAVAGLPALG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MRQKAVSLFLCYLLLFTCSGVEAGKKKCSESSDSGSGFWKALTFMAVGGGLAVAGLPALG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 FTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVVIGNIGALMGYATH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 FTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVVIGNIGALMGYATH
               70        80        90       100       110       120

              130
pF1KB6 KYLDSEEDEE
       ::::::::::
CCDS30 KYLDSEEDEE
              130

>>CCDS307.1 IFI6 gene_id:2537|Hs108|chr1                  (134 aa)
 initn: 700 init1: 700 opt: 822  Z-score: 1012.8  bits: 193.1 E(32554): 4.3e-50
Smith-Waterman score: 822; 97.0% identity (97.0% similar) in 134 aa overlap (1-130:1-134)

               10        20            30        40        50      
pF1KB6 MRQKAVSLFLCYLLLFTCSGVEAG----KKKCSESSDSGSGFWKALTFMAVGGGLAVAGL
       ::::::::::::::::::::::::    ::::::::::::::::::::::::::::::::
CCDS30 MRQKAVSLFLCYLLLFTCSGVEAGENAGKKKCSESSDSGSGFWKALTFMAVGGGLAVAGL
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KB6 PALGFTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVVIGNIGALMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 PALGFTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVVIGNIGALMG
               70        80        90       100       110       120

        120       130
pF1KB6 YATHKYLDSEEDEE
       ::::::::::::::
CCDS30 YATHKYLDSEEDEE
              130    

>>CCDS308.1 IFI6 gene_id:2537|Hs108|chr1                  (138 aa)
 initn: 702 init1: 702 opt: 814  Z-score: 1002.9  bits: 191.3 E(32554): 1.5e-49
Smith-Waterman score: 814; 94.2% identity (94.2% similar) in 138 aa overlap (1-130:1-138)

               10        20                30        40        50  
pF1KB6 MRQKAVSLFLCYLLLFTCSGVEAG--------KKKCSESSDSGSGFWKALTFMAVGGGLA
       ::::::::::::::::::::::::        ::::::::::::::::::::::::::::
CCDS30 MRQKAVSLFLCYLLLFTCSGVEAGENAGKDAGKKKCSESSDSGSGFWKALTFMAVGGGLA
               10        20        30        40        50        60

             60        70        80        90       100       110  
pF1KB6 VAGLPALGFTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVVIGNIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VAGLPALGFTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVVIGNIG
               70        80        90       100       110       120

            120       130
pF1KB6 ALMGYATHKYLDSEEDEE
       ::::::::::::::::::
CCDS30 ALMGYATHKYLDSEEDEE
              130        

>>CCDS9920.1 IFI27L2 gene_id:83982|Hs108|chr14            (130 aa)
 initn: 326 init1: 207 opt: 268  Z-score: 338.8  bits: 68.3 E(32554): 1.5e-12
Smith-Waterman score: 268; 57.0% identity (86.1% similar) in 79 aa overlap (46-116:9-87)

          20        30        40        50            60        70 
pF1KB6 FTCSGVEAGKKKCSESSDSGSGFWKALTFMAVGGGLAVAGLP----ALGFTGAGIAANSV
                                     ::::.:::...:    :.:::::::::.:.
CCDS99                       MMKRAAAAAVGGALAVGAVPVVLSAMGFTGAGIAASSI
                                     10        20        30        

              80        90       100           110       120       
pF1KB6 AASLMSWSAILNGGGVPAGGLVATLQSLGAGG----SSVVIGNIGALMGYATHKYLDSEE
       ::..:: .:: ::::: ::.:::::::.::.:    :.......:...:           
CCDS99 AAKMMSAAAIANGGGVSAGSLVATLQSVGAAGLSTSSNILLASVGSVLGACLGNSPSSSL
       40        50        60        70        80        90        

       130                             
pF1KB6 DEE                             
                                       
CCDS99 PAEPEAKEDEARENVPQGEPPKPPLKSEKHEE
      100       110       120       130

>>CCDS9919.1 IFI27L1 gene_id:122509|Hs108|chr14           (104 aa)
 initn: 319 init1: 249 opt: 249  Z-score: 317.0  bits: 64.0 E(32554): 2.4e-11
Smith-Waterman score: 249; 49.5% identity (75.3% similar) in 93 aa overlap (33-125:8-100)

             10        20        30        40        50        60  
pF1KB6 QKAVSLFLCYLLLFTCSGVEAGKKKCSESSDSGSGFWKALTFMAVGGGLAVAGLPALGFT
                                     ::: .   :..  .:. : ....: :.:::
CCDS99                        MGKESGWDSGRAAVAAVVGGVVAVGTVLVALSAMGFT
                                      10        20        30       

             70        80        90       100       110       120  
pF1KB6 GAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVVIGNIGALMGYATHKY
       ..::::.:.::..:: .:: ::::: ::.::: :::.::.: ::.   ::.. : :   .
CCDS99 SVGIAASSIAAKMMSTAAIANGGGVAAGSLVAILQSVGAAGLSVTSKVIGGFAGTALGAW
        40        50        60        70        80        90       

            130
pF1KB6 LDSEEDEE
       : :     
CCDS99 LGSPPSS 
       100     




130 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:41:05 2016 done: Fri Nov  4 23:41:05 2016
 Total Scan time:  1.460 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]