FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6727, 92 aa
  1>>>pF1KB6727 92 - 92 aa - 92 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.4599+/-0.000569; mu= 13.0738+/- 0.034
 mean_var=53.9996+/-10.889, 0's: 0 Z-trim(111.6): 23  B-trim: 89 in 1/49
 Lambda= 0.174534
 statistics sampled from 12518 (12540) to 12518 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.781), E-opt: 0.2 (0.385), width:  16
 Scan time:  1.260

The best scores are:                                      opt bits E(32554)
CCDS12445.1 FXYD1 gene_id:5348|Hs108|chr19         (  92)  608 160.0 1.9e-40
CCDS73400.1 FXYD2 gene_id:100533181|Hs108|chr11    ( 144)  261 72.7 5.4e-14
CCDS8387.1 FXYD6 gene_id:53826|Hs108|chr11         (  95)  258 71.9 6.6e-14


>>CCDS12445.1 FXYD1 gene_id:5348|Hs108|chr19              (92 aa)
 initn: 608 init1: 608 opt: 608  Z-score: 839.6  bits: 160.0 E(32554): 1.9e-40
Smith-Waterman score: 608; 100.0% identity (100.0% similar) in 92 aa overlap (1-92:1-92)

               10        20        30        40        50        60
pF1KB6 MASLGHILVFCVGLLTMAKAESPKEHDPFTYDYQSLQIGGLVIAGILFILGILIVLSRRC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MASLGHILVFCVGLLTMAKAESPKEHDPFTYDYQSLQIGGLVIAGILFILGILIVLSRRC
               10        20        30        40        50        60

               70        80        90  
pF1KB6 RCKFNQQQRTGEPDEEEGTFRSSIRRLSTRRR
       ::::::::::::::::::::::::::::::::
CCDS12 RCKFNQQQRTGEPDEEEGTFRSSIRRLSTRRR
               70        80        90  

>>CCDS73400.1 FXYD2 gene_id:100533181|Hs108|chr11         (144 aa)
 initn: 294 init1: 251 opt: 261  Z-score: 364.7  bits: 72.7 E(32554): 5.4e-14
Smith-Waterman score: 261; 53.3% identity (77.3% similar) in 75 aa overlap (7-77:4-78)

               10            20        30        40        50      
pF1KB6 MASLGHILVFCVGLLT----MAKAESPKEHDPFTYDYQSLQIGGLVIAGILFILGILIVL
             .:::  .::.     . ::. :: ::: ::::.:.:::::.: .:: .:::..:
CCDS73    MELVLVFLCSLLAPMVLASAAEKEKEMDPFHYDYQTLRIGGLVFAVVLFSVGILLIL
                  10        20        30        40        50       

         60        70        80        90                          
pF1KB6 SRRCRCKFNQQQRTGEPDEEEGTFRSSIRRLSTRRR                        
       ::::.:.:::. :.  :. .:                                       
CCDS73 SRRCKCSFNQKPRNRAPESRELKCSHQVEGGSPKGDVDPFYYDYETVRNGGLIFAGLAFI
        60        70        80        90       100       110       

>>CCDS8387.1 FXYD6 gene_id:53826|Hs108|chr11              (95 aa)
 initn: 305 init1: 238 opt: 258  Z-score: 363.1  bits: 71.9 E(32554): 6.6e-14
Smith-Waterman score: 258; 51.2% identity (75.6% similar) in 82 aa overlap (7-84:4-83)

               10            20        30        40        50      
pF1KB6 MASLGHILVFCVGLLT----MAKAESPKEHDPFTYDYQSLQIGGLVIAGILFILGILIVL
             .:::  .::.     . ::. :: ::: ::::.:.:::::.: .:: .:::..:
CCDS83    MELVLVFLCSLLAPMVLASAAEKEKEMDPFHYDYQTLRIGGLVFAVVLFSVGILLIL
                  10        20        30        40        50       

         60        70        80        90      
pF1KB6 SRRCRCKFNQQQRTGEPDEEEGTFRSSIRRLSTRRR    
       ::::.:.:::. :.  : .::.  .. :            
CCDS83 SRRCKCSFNQKPRA--PGDEEAQVENLITANATEPQKAEN
        60        70          80        90     




92 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:38:42 2016 done: Fri Nov  4 23:38:42 2016
 Total Scan time:  1.260 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]