Result of FASTA (ccds) for
pF1KB6724
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6724, 135 aa
1>>>pF1KB6724 135 - 135 aa - 135 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0322+/-0.000719; mu= 12.4339+/- 0.043
mean_var=57.0745+/-11.659, 0's: 0 Z-trim(107.2): 21 B-trim: 0 in 0/50
Lambda= 0.169767
statistics sampled from 9393 (9412) to 9393 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.684), E-opt: 0.2 (0.289), width: 16
Scan time: 1.330
The best scores are: opt bits E(32554)
CCDS3110.2 RBP1 gene_id:5947|Hs108|chr3 ( 197) 927 234.8 1.8e-62
CCDS46926.1 RBP1 gene_id:5947|Hs108|chr3 ( 157) 566 146.3 6.1e-36
CCDS46925.1 RBP1 gene_id:5947|Hs108|chr3 ( 153) 565 146.1 7.1e-36
CCDS109.1 RBP7 gene_id:116362|Hs108|chr1 ( 134) 562 145.3 1.1e-35
CCDS8574.1 RBP5 gene_id:83758|Hs108|chr12 ( 135) 548 141.9 1.1e-34
CCDS3109.1 RBP2 gene_id:5948|Hs108|chr3 ( 134) 495 128.9 9.1e-31
CCDS1152.1 CRABP2 gene_id:1382|Hs108|chr1 ( 138) 338 90.5 3.5e-19
CCDS10301.1 CRABP1 gene_id:1381|Hs108|chr15 ( 137) 335 89.7 5.8e-19
CCDS5127.1 FABP7 gene_id:2173|Hs108|chr6 ( 132) 324 87.0 3.7e-18
CCDS83121.1 FABP7 gene_id:2173|Hs108|chr6 ( 166) 315 84.9 2.1e-17
CCDS6229.1 PMP2 gene_id:5375|Hs108|chr8 ( 132) 305 82.4 9.2e-17
CCDS6230.1 FABP4 gene_id:2167|Hs108|chr8 ( 132) 281 76.5 5.4e-15
CCDS342.1 FABP3 gene_id:2170|Hs108|chr1 ( 133) 272 74.3 2.5e-14
CCDS47882.1 FABP12 gene_id:646486|Hs108|chr8 ( 140) 237 65.7 1e-11
CCDS6228.1 FABP5 gene_id:2171|Hs108|chr8 ( 135) 234 65.0 1.6e-11
>>CCDS3110.2 RBP1 gene_id:5947|Hs108|chr3 (197 aa)
initn: 927 init1: 927 opt: 927 Z-score: 1235.1 bits: 234.8 E(32554): 1.8e-62
Smith-Waterman score: 927; 100.0% identity (100.0% similar) in 135 aa overlap (1-135:63-197)
10 20 30
pF1KB6 MPVDFTGYWKMLVNENFEEYLRALDVNVAL
::::::::::::::::::::::::::::::
CCDS31 HHPRSTGSRCPGSLQPSRPLVANWLQSLPEMPVDFTGYWKMLVNENFEEYLRALDVNVAL
40 50 60 70 80 90
40 50 60 70 80 90
pF1KB6 RKIANLLKPDKEIVQDGDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMTTVSWD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RKIANLLKPDKEIVQDGDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMTTVSWD
100 110 120 130 140 150
100 110 120 130
pF1KB6 GDKLQCVQKGEKEGRGWTQWIEGDELHLEMRVEGVVCKQVFKKVQ
:::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GDKLQCVQKGEKEGRGWTQWIEGDELHLEMRVEGVVCKQVFKKVQ
160 170 180 190
>>CCDS46926.1 RBP1 gene_id:5947|Hs108|chr3 (157 aa)
initn: 583 init1: 566 opt: 566 Z-score: 758.7 bits: 146.3 E(32554): 6.1e-36
Smith-Waterman score: 566; 97.7% identity (98.9% similar) in 87 aa overlap (1-87:63-149)
10 20 30
pF1KB6 MPVDFTGYWKMLVNENFEEYLRALDVNVAL
::::::::::::::::::::::::::::::
CCDS46 HHPRSTGSRCPGSLQPSRPLVANWLQSLPEMPVDFTGYWKMLVNENFEEYLRALDVNVAL
40 50 60 70 80 90
40 50 60 70 80 90
pF1KB6 RKIANLLKPDKEIVQDGDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMTTVSWD
::::::::::::::::::::::::::::::::::::::::::::::::::::::. :
CCDS46 RKIANLLKPDKEIVQDGDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMAGVQSR
100 110 120 130 140 150
100 110 120 130
pF1KB6 GDKLQCVQKGEKEGRGWTQWIEGDELHLEMRVEGVVCKQVFKKVQ
CCDS46 DLSSL
>>CCDS46925.1 RBP1 gene_id:5947|Hs108|chr3 (153 aa)
initn: 582 init1: 565 opt: 565 Z-score: 757.6 bits: 146.1 E(32554): 7.1e-36
Smith-Waterman score: 565; 98.8% identity (100.0% similar) in 85 aa overlap (1-85:63-147)
10 20 30
pF1KB6 MPVDFTGYWKMLVNENFEEYLRALDVNVAL
::::::::::::::::::::::::::::::
CCDS46 HHPRSTGSRCPGSLQPSRPLVANWLQSLPEMPVDFTGYWKMLVNENFEEYLRALDVNVAL
40 50 60 70 80 90
40 50 60 70 80 90
pF1KB6 RKIANLLKPDKEIVQDGDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMTTVSWD
::::::::::::::::::::::::::::::::::::::::::::::::::::::.
CCDS46 RKIANLLKPDKEIVQDGDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMSETGFS
100 110 120 130 140 150
100 110 120 130
pF1KB6 GDKLQCVQKGEKEGRGWTQWIEGDELHLEMRVEGVVCKQVFKKVQ
CCDS46 S
>>CCDS109.1 RBP7 gene_id:116362|Hs108|chr1 (134 aa)
initn: 587 init1: 562 opt: 562 Z-score: 754.5 bits: 145.3 E(32554): 1.1e-35
Smith-Waterman score: 562; 57.1% identity (82.7% similar) in 133 aa overlap (1-133:1-133)
10 20 30 40 50 60
pF1KB6 MPVDFTGYWKMLVNENFEEYLRALDVNVALRKIANLLKPDKEIVQDGDHMIIRTLSTFRN
::.:..: : .: ..::: :. :: .. : ::::.::::.: : :.:: . :.: :..::
CCDS10 MPADLSGTWTLLSSDNFEGYMLALGIDFATRKIAKLLKPQKVIEQNGDSFTIHTNSSLRN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YIMDFQVGKEFEEDLTGIDDRKCMTTVSWDGDKLQCVQKGEKEGRGWTQWIEGDELHLEM
:.. :.::.::.:: :.:.::: . : ::.:.: :.:::::..::::.:::::.:::::
CCDS10 YFVKFKVGEEFDEDNRGLDNRKCKSLVIWDNDRLTCIQKGEKKNRGWTHWIEGDKLHLEM
70 80 90 100 110 120
130
pF1KB6 RVEGVVCKQVFKKVQ
:: ::::.:..
CCDS10 FCEGQVCKQTFQRA
130
>>CCDS8574.1 RBP5 gene_id:83758|Hs108|chr12 (135 aa)
initn: 584 init1: 548 opt: 548 Z-score: 735.9 bits: 141.9 E(32554): 1.1e-34
Smith-Waterman score: 548; 55.6% identity (86.7% similar) in 135 aa overlap (1-135:1-135)
10 20 30 40 50 60
pF1KB6 MPVDFTGYWKMLVNENFEEYLRALDVNVALRKIANLLKPDKEIVQDGDHMIIRTLSTFRN
:: ..:::.... ..:.:.::.::....:.:::: :::::::: ..:.:: .::::::::
CCDS85 MPPNLTGYYRFVSQKNMEDYLQALNISLAVRKIALLLKPDKEIEHQGNHMTVRTLSTFRN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YIMDFQVGKEFEEDLTGIDDRKCMTTVSWDGDKLQCVQKGEKEGRGWTQWIEGDELHLEM
: ..:.:: :::::: ..: :::.: :.:. ..: :::::: .::: .:.::. :.::.
CCDS85 YTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLVCVQKGEVPNRGWRHWLEGEMLYLEL
70 80 90 100 110 120
130
pF1KB6 RVEGVVCKQVFKKVQ
.. .::.:::.::.
CCDS85 TARDAVCEQVFRKVR
130
>>CCDS3109.1 RBP2 gene_id:5948|Hs108|chr3 (134 aa)
initn: 464 init1: 464 opt: 495 Z-score: 665.8 bits: 128.9 E(32554): 9.1e-31
Smith-Waterman score: 495; 55.6% identity (72.9% similar) in 133 aa overlap (1-133:1-133)
10 20 30 40 50 60
pF1KB6 MPVDFTGYWKMLVNENFEEYLRALDVNVALRKIANLLKPDKEIVQDGDHMIIRTLSTFRN
: : .: :.: ::::: :..:::.. : :::: : : : ::::.. .: :::::
CCDS31 MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKVIDQDGDNFKTKTTSTFRN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YIMDFQVGKEFEEDLTGIDDRKCMTTVSWDGDKLQCVQKGEKEGRGWTQWIEGDELHLEM
: .:: :: ::.: ..:.:. . :.:.:: : ::::::::.::: ::::::.:.::.
CCDS31 YDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVCVQKGEKENRGWKQWIEGDKLYLEL
70 80 90 100 110 120
130
pF1KB6 RVEGVVCKQVFKKVQ
::.:::::
CCDS31 TCGDQVCRQVFKKK
130
>>CCDS1152.1 CRABP2 gene_id:1382|Hs108|chr1 (138 aa)
initn: 290 init1: 129 opt: 338 Z-score: 457.8 bits: 90.5 E(32554): 3.5e-19
Smith-Waterman score: 338; 44.2% identity (67.4% similar) in 138 aa overlap (1-131:1-135)
10 20 30 40 50
pF1KB6 MPVDFTGYWKMLVNENFEEYLRALDVNVALRKIA--NLLKPDKEIVQDGDHMIIRTLSTF
:: .:.: ::.. .::::: :..: ::: ::::: :: :: :.:: . :.: .:
CCDS11 MP-NFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTV
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 RNYIMDFQVGKEFEEDLTGIDDRKCMTTVSWDGD-KLQCVQK---GEKEGRGWTQWIEGD
:. ..:.::.::::. .: : : . :.:... :. : :: :: .::. . .:
CCDS11 RTTEINFKVGEEFEEQT--VDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTND
60 70 80 90 100 110
120 130
pF1KB6 -ELHLEMRVEGVVCKQVFKKVQ
:: : : .. ::: .:.
CCDS11 GELILTMTADDVVCTRVYVRE
120 130
>>CCDS10301.1 CRABP1 gene_id:1381|Hs108|chr15 (137 aa)
initn: 185 init1: 132 opt: 335 Z-score: 453.9 bits: 89.7 E(32554): 5.8e-19
Smith-Waterman score: 335; 40.9% identity (68.6% similar) in 137 aa overlap (1-131:1-134)
10 20 30 40 50
pF1KB6 MPVDFTGYWKMLVNENFEEYLRALDVNVALRKIA--NLLKPDKEIVQDGDHMIIRTLSTF
:: .:.: ::: .:::.: :.:: ::. :::.: :: :: ::::.. :.: .:
CCDS10 MP-NFAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTV
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 RNYIMDFQVGKEFEEDLTGIDDRKCMTTVSWDGD-KLQCVQ---KGEKEGRGWTQWIEGD
:. ..:.::. :::. .: ::: . ..:... :..:.: .:. ::. . .:
CCDS10 RTTEINFKVGEGFEEET--VDGRKCRSLATWENENKIHCTQTLLEGDGPKTYWTRELAND
60 70 80 90 100 110
120 130
pF1KB6 ELHLEMRVEGVVCKQVFKKVQ
:: : . .. ::: ...
CCDS10 ELILTFGADDVVCTRIYVRE
120 130
>>CCDS5127.1 FABP7 gene_id:2173|Hs108|chr6 (132 aa)
initn: 252 init1: 231 opt: 324 Z-score: 439.6 bits: 87.0 E(32554): 3.7e-18
Smith-Waterman score: 324; 39.5% identity (70.5% similar) in 129 aa overlap (5-133:5-131)
10 20 30 40 50 60
pF1KB6 MPVDFTGYWKMLVNENFEEYLRALDVNVALRKIANLLKPDKEIVQDGDHMIIRTLSTFRN
: . ::. ..::.::..:: :. : :...:. :: : :.::...:::::::.:
CCDS51 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YIMDFQVGKEFEEDLTGIDDRKCMTTVSWDGDKLQCVQKGEKEGRGWTQWIEGDELHLEM
..::.:.::.: : :::.: ..:: ::::: .:: . . .... :. .. . .
CCDS51 TEISFQLGEEFDE--TTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTL
70 80 90 100 110
130
pF1KB6 RVEGVVCKQVFKKVQ
:: . ..:
CCDS51 TFGDVVAVRHYEKA
120 130
>>CCDS83121.1 FABP7 gene_id:2173|Hs108|chr6 (166 aa)
initn: 252 init1: 231 opt: 315 Z-score: 426.1 bits: 84.9 E(32554): 2.1e-17
Smith-Waterman score: 315; 42.9% identity (74.1% similar) in 112 aa overlap (5-116:5-114)
10 20 30 40 50 60
pF1KB6 MPVDFTGYWKMLVNENFEEYLRALDVNVALRKIANLLKPDKEIVQDGDHMIIRTLSTFRN
: . ::. ..::.::..:: :. : :...:. :: : :.::...:::::::.:
CCDS83 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YIMDFQVGKEFEEDLTGIDDRKCMTTVSWDGDKLQCVQKGEKEGRGWTQWIEGDELHLEM
..::.:.::.: : :::.: ..:: ::::: .:: . . .... :. ..
CCDS83 TEISFQLGEEFDE--TTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMVS
70 80 90 100 110
130
pF1KB6 RVEGVVCKQVFKKVQ
CCDS83 NDNSPFFLVFFSSPHTSHLLPSSSLLLPFFLLPSFFNNTSLARFFNYM
120 130 140 150 160
135 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 23:36:16 2016 done: Fri Nov 4 23:36:17 2016
Total Scan time: 1.330 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]