Result of FASTA (ccds) for
pF1KB6723
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6723, 91 aa
1>>>pF1KB6723 91 - 91 aa - 91 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7513+/-0.00057; mu= 11.5955+/- 0.034
mean_var=55.4319+/-10.994, 0's: 0 Z-trim(112.4): 46 B-trim: 297 in 2/48
Lambda= 0.172264
statistics sampled from 13143 (13191) to 13143 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.789), E-opt: 0.2 (0.405), width: 16
Scan time: 1.450
The best scores are: opt bits E(32554)
CCDS11300.1 CCL5 gene_id:6352|Hs108|chr17 ( 91) 609 158.3 6e-40
CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17 ( 93) 338 91.0 1.2e-19
CCDS11307.1 CCL3 gene_id:6348|Hs108|chr17 ( 92) 332 89.5 3.2e-19
CCDS11308.1 CCL4 gene_id:6351|Hs108|chr17 ( 92) 325 87.7 1.1e-18
CCDS32627.2 CCL4L2 gene_id:9560|Hs108|chr17 ( 87) 272 74.5 9.4e-15
CCDS32624.1 CCL14 gene_id:6358|Hs108|chr17 ( 93) 248 68.6 6.2e-13
CCDS11306.1 CCL18 gene_id:6362|Hs108|chr17 ( 89) 246 68.1 8.5e-13
CCDS11279.1 CCL11 gene_id:6356|Hs108|chr17 ( 97) 238 66.1 3.6e-12
CCDS5578.1 CCL26 gene_id:10344|Hs108|chr7 ( 94) 231 64.4 1.2e-11
CCDS11278.1 CCL7 gene_id:6354|Hs108|chr17 ( 99) 225 62.9 3.4e-11
CCDS45652.1 CCL14 gene_id:6358|Hs108|chr17 ( 109) 222 62.2 6.3e-11
>>CCDS11300.1 CCL5 gene_id:6352|Hs108|chr17 (91 aa)
initn: 609 init1: 609 opt: 609 Z-score: 830.7 bits: 158.3 E(32554): 6e-40
Smith-Waterman score: 609; 100.0% identity (100.0% similar) in 91 aa overlap (1-91:1-91)
10 20 30 40 50 60
pF1KB6 MKVSAAALAVILIATALCAPASASPYSSDTTPCCFAYIARPLPRAHIKEYFYTSGKCSNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MKVSAAALAVILIATALCAPASASPYSSDTTPCCFAYIARPLPRAHIKEYFYTSGKCSNP
10 20 30 40 50 60
70 80 90
pF1KB6 AVVFVTRKNRQVCANPEKKWVREYINSLEMS
:::::::::::::::::::::::::::::::
CCDS11 AVVFVTRKNRQVCANPEKKWVREYINSLEMS
70 80 90
>>CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17 (93 aa)
initn: 339 init1: 260 opt: 338 Z-score: 466.5 bits: 91.0 E(32554): 1.2e-19
Smith-Waterman score: 338; 48.9% identity (83.7% similar) in 92 aa overlap (1-91:1-92)
10 20 30 40 50
pF1KB6 MKVSAAALAVILIATALCAPASASPYSSDT-TPCCFAYIARPLPRAHIKEYFYTSGKCSN
:.::.:::::.: . ::: . ..: ..:: : :::.: .: .:. : .:: ::..::.
CCDS32 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
10 20 30 40 50 60
60 70 80 90
pF1KB6 PAVVFVTRKNRQVCANPEKKWVREYINSLEMS
:.:.:.:...:::::.: ..::..:...::.:
CCDS32 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
70 80 90
>>CCDS11307.1 CCL3 gene_id:6348|Hs108|chr17 (92 aa)
initn: 344 init1: 323 opt: 332 Z-score: 458.5 bits: 89.5 E(32554): 3.2e-19
Smith-Waterman score: 332; 49.5% identity (81.3% similar) in 91 aa overlap (1-91:1-91)
10 20 30 40 50 60
pF1KB6 MKVSAAALAVILIATALCAPASASPYSSDTTPCCFAYIARPLPRAHIKEYFYTSGKCSNP
:.::.:::::.: . ::: ::: .. : :::.: .: .:. : .:: ::..::.:
CCDS11 MQVSTAALAVLLCTMALCNQFSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSKP
10 20 30 40 50 60
70 80 90
pF1KB6 AVVFVTRKNRQVCANPEKKWVREYINSLEMS
.:.:.:...:::::.: ..::..:...::.:
CCDS11 GVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
70 80 90
>>CCDS11308.1 CCL4 gene_id:6351|Hs108|chr17 (92 aa)
initn: 359 init1: 260 opt: 325 Z-score: 449.1 bits: 87.7 E(32554): 1.1e-18
Smith-Waterman score: 325; 45.7% identity (83.7% similar) in 92 aa overlap (1-91:1-92)
10 20 30 40 50
pF1KB6 MKVSAAALAVILIATALCAPASASPYSSDT-TPCCFAYIARPLPRAHIKEYFYTSGKCSN
::. ...:.......:.:.:: ..:..:: : :::.: :: ::: . .:. ::. ::.
CCDS11 MKLCVTVLSLLMLVAAFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
10 20 30 40 50 60
60 70 80 90
pF1KB6 PAVVFVTRKNRQVCANPEKKWVREYINSLEMS
::::: :....::::.: ..::.::. .::..
CCDS11 PAVVFQTKRSKQVCADPSESWVQEYVYDLELN
70 80 90
>>CCDS32627.2 CCL4L2 gene_id:9560|Hs108|chr17 (87 aa)
initn: 226 init1: 146 opt: 272 Z-score: 378.3 bits: 74.5 E(32554): 9.4e-15
Smith-Waterman score: 272; 42.4% identity (78.3% similar) in 92 aa overlap (1-91:1-87)
10 20 30 40 50
pF1KB6 MKVSAAALAVILIATALCAPASASPYSSDT-TPCCFAYIARPLPRAHIKEYFYTSGKCSN
::. ...:.......:.:. : ..:..:: : :::.: :: ::: . .:. ::. ::.
CCDS32 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
10 20 30 40 50 60
60 70 80 90
pF1KB6 PAVVFVTRKNRQVCANPEKKWVREYINSLEMS
:::: ..::::.: ..::.::. .::..
CCDS32 PAVV-----GKQVCADPSESWVQEYVYDLELN
70 80
>>CCDS32624.1 CCL14 gene_id:6358|Hs108|chr17 (93 aa)
initn: 256 init1: 219 opt: 248 Z-score: 345.6 bits: 68.6 E(32554): 6.2e-13
Smith-Waterman score: 248; 36.3% identity (72.5% similar) in 91 aa overlap (1-89:1-91)
10 20 30 40 50
pF1KB6 MKVSAAALAVILIATALCAPASASPYSSDTTP--CCFAYIARPLPRAHIKEYFYTSGKCS
::.:.::. .:. : . . : . : :::.: . .:: .: .:. :...::
CCDS32 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
10 20 30 40 50 60
60 70 80 90
pF1KB6 NPAVVFVTRKNRQVCANPEKKWVREYINSLEMS
.:..::.:.....::.:: :::..::....
CCDS32 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
70 80 90
>>CCDS11306.1 CCL18 gene_id:6362|Hs108|chr17 (89 aa)
initn: 249 init1: 209 opt: 246 Z-score: 343.2 bits: 68.1 E(32554): 8.5e-13
Smith-Waterman score: 246; 38.5% identity (73.6% similar) in 91 aa overlap (1-91:1-88)
10 20 30 40 50 60
pF1KB6 MKVSAAALAVILIATALCAPASASPYSSDTTPCCFAYIARPLPRAHIKEYFYTSGKCSNP
:: :::: :.. . ::: : . ... ::..: . .:. : .: :: .: .:
CCDS11 MKGLAAALLVLVCTMALC---SCAQVGTNKELCCLVYTSWQIPQKFIVDYSETSPQCPKP
10 20 30 40 50
70 80 90
pF1KB6 AVVFVTRKNRQVCANPEKKWVREYINSLEMS
.:...:...::.::.:.::::..::..:...
CCDS11 GVILLTKRGRQICADPNKKWVQKYISDLKLNA
60 70 80
>>CCDS11279.1 CCL11 gene_id:6356|Hs108|chr17 (97 aa)
initn: 252 init1: 183 opt: 238 Z-score: 331.9 bits: 66.1 E(32554): 3.6e-12
Smith-Waterman score: 238; 43.3% identity (68.9% similar) in 90 aa overlap (1-89:1-89)
10 20 30 40 50
pF1KB6 MKVSAAALAVILIATALCAPASASPYSSDTTPCCFAYIARPLPRAHIKEYFY-TSGKCSN
:::::: : ..:::.:. . :.: : :: ::: : .: ... : ::::: .
CCDS11 MKVSAALLWLLLIAAAFSPQGLAGPASVPTT-CCFNLANRKIPLQRLESYRRITSGKCPQ
10 20 30 40 50
60 70 80 90
pF1KB6 PAVVFVTRKNRQVCANPEKKWVREYINSLEMS
::.: :. ...::.:.::::.. .. :.
CCDS11 KAVIFKTKLAKDICADPKKKWVQDSMKYLDQKSPTPKP
60 70 80 90
>>CCDS5578.1 CCL26 gene_id:10344|Hs108|chr7 (94 aa)
initn: 256 init1: 216 opt: 231 Z-score: 322.7 bits: 64.4 E(32554): 1.2e-11
Smith-Waterman score: 231; 37.8% identity (76.8% similar) in 82 aa overlap (9-89:8-89)
10 20 30 40 50
pF1KB6 MKVSAAALAVILIATALCAPASASPYSSDTTP-CCFAYIARPLPRAHIKEYFYTSGKCSN
...:.:. : ... .:: . ::: : .::: . .. : .::..::.
CCDS55 MMGLSLASAVLLASLLSLHLGTATRGSDISKTCCFQYSHKPLPWTWVRSYEFTSNSCSQ
10 20 30 40 50
60 70 80 90
pF1KB6 PAVVFVTRKNRQVCANPEKKWVREYINSLEMS
::.:.:.....::..:.::::..::. :.
CCDS55 RAVIFTTKRGKKVCTHPRKKWVQKYISLLKTPKQL
60 70 80 90
>>CCDS11278.1 CCL7 gene_id:6354|Hs108|chr17 (99 aa)
initn: 231 init1: 127 opt: 225 Z-score: 314.4 bits: 62.9 E(32554): 3.4e-11
Smith-Waterman score: 225; 35.2% identity (71.4% similar) in 91 aa overlap (1-89:1-91)
10 20 30 40 50
pF1KB6 MKVSAAALAVILIATALCAPASASPYSSDT-TPCCFAYIARPLPRAHIKEYFYT-SGKCS
::.::: : ..: :.:. . :.: . .: : ::. .: . .:. ... : : :..:
CCDS11 MKASAALLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLESYRRTTSSHCP
10 20 30 40 50 60
60 70 80 90
pF1KB6 NPAVVFVTRKNRQVCANPEKKWVREYINSLEMS
::.: :. ....::.: .:::..... :.
CCDS11 REAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQTPKL
70 80 90
91 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 23:35:43 2016 done: Fri Nov 4 23:35:44 2016
Total Scan time: 1.450 Total Display time: -0.050
Function used was FASTA [36.3.4 Apr, 2011]