FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6722, 134 aa
  1>>>pF1KB6722 134 - 134 aa - 134 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3775+/-0.000577; mu= 12.4098+/- 0.035
 mean_var=86.4119+/-17.151, 0's: 0 Z-trim(114.6): 40  B-trim: 130 in 1/49
 Lambda= 0.137971
 statistics sampled from 15159 (15200) to 15159 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.828), E-opt: 0.2 (0.467), width:  16
 Scan time:  1.530

The best scores are:                                      opt bits E(32554)
CCDS6571.1 CCL21 gene_id:6366|Hs108|chr9           ( 134)  919 191.3 1.5e-49


>>CCDS6571.1 CCL21 gene_id:6366|Hs108|chr9                (134 aa)
 initn: 919 init1: 919 opt: 919  Z-score: 1002.9  bits: 191.3 E(32554): 1.5e-49
Smith-Waterman score: 919; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134)

               10        20        30        40        50        60
pF1KB6 MAQSLALSLLILVLAFGIPRTQGSDGGAQDCCLKYSQRKIPAKVVRSYRKQEPSLGCSIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MAQSLALSLLILVLAFGIPRTQGSDGGAQDCCLKYSQRKIPAKVVRSYRKQEPSLGCSIP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 AILFLPRKRSQAELCADPKELWVQQLMQHLDKTPSPQKPAQGCRKDRGASKTGKKGKGSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 AILFLPRKRSQAELCADPKELWVQQLMQHLDKTPSPQKPAQGCRKDRGASKTGKKGKGSK
               70        80        90       100       110       120

              130    
pF1KB6 GCKRTERSQTPKGP
       ::::::::::::::
CCDS65 GCKRTERSQTPKGP
              130    




134 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:34:39 2016 done: Fri Nov  4 23:34:39 2016
 Total Scan time:  1.530 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]