Result of FASTA (omim) for
pF1KB6721
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6721, 91 aa
1>>>pF1KB6721 91 - 91 aa - 91 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.2273+/-0.000294; mu= 13.7361+/- 0.018
mean_var=47.3033+/- 9.733, 0's: 0 Z-trim(116.9): 34 B-trim: 2709 in 2/48
Lambda= 0.186478
statistics sampled from 28444 (28478) to 28444 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.746), E-opt: 0.2 (0.334), width: 16
Scan time: 3.670
The best scores are: opt bits E(85289)
NP_036454 (OMIM: 607285) U6 snRNA-associated Sm-li ( 91) 586 164.3 2.5e-41
NP_001132971 (OMIM: 607285) U6 snRNA-associated Sm ( 62) 400 114.1 2.2e-26
NP_001124182 (OMIM: 607285) U6 snRNA-associated Sm ( 62) 400 114.1 2.2e-26
NP_055278 (OMIM: 607283) U6 snRNA-associated Sm-li ( 102) 137 43.5 6.4e-05
NP_003085 (OMIM: 128260,615059) small nuclear ribo ( 92) 136 43.2 7.1e-05
NP_001315567 (OMIM: 128260,615059) small nuclear r ( 79) 134 42.6 9.1e-05
NP_001291393 (OMIM: 128260,615059) small nuclear r ( 84) 134 42.6 9.6e-05
NP_001315566 (OMIM: 128260,615059) small nuclear r ( 90) 134 42.7 0.0001
NP_003087 (OMIM: 603542) small nuclear ribonucleop ( 76) 110 36.1 0.0078
>>NP_036454 (OMIM: 607285) U6 snRNA-associated Sm-like p (91 aa)
initn: 586 init1: 586 opt: 586 Z-score: 862.9 bits: 164.3 E(85289): 2.5e-41
Smith-Waterman score: 586; 100.0% identity (100.0% similar) in 91 aa overlap (1-91:1-91)
10 20 30 40 50 60
pF1KB6 MAANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MAANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT
10 20 30 40 50 60
70 80 90
pF1KB6 PEGRRITKLDQILLNGNNITMLVPGGEGPEV
:::::::::::::::::::::::::::::::
NP_036 PEGRRITKLDQILLNGNNITMLVPGGEGPEV
70 80 90
>>NP_001132971 (OMIM: 607285) U6 snRNA-associated Sm-lik (62 aa)
initn: 400 init1: 400 opt: 400 Z-score: 594.8 bits: 114.1 E(85289): 2.2e-26
Smith-Waterman score: 400; 100.0% identity (100.0% similar) in 62 aa overlap (30-91:1-62)
10 20 30 40 50 60
pF1KB6 MAANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT
:::::::::::::::::::::::::::::::
NP_001 MKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT
10 20 30
70 80 90
pF1KB6 PEGRRITKLDQILLNGNNITMLVPGGEGPEV
:::::::::::::::::::::::::::::::
NP_001 PEGRRITKLDQILLNGNNITMLVPGGEGPEV
40 50 60
>>NP_001124182 (OMIM: 607285) U6 snRNA-associated Sm-lik (62 aa)
initn: 400 init1: 400 opt: 400 Z-score: 594.8 bits: 114.1 E(85289): 2.2e-26
Smith-Waterman score: 400; 100.0% identity (100.0% similar) in 62 aa overlap (30-91:1-62)
10 20 30 40 50 60
pF1KB6 MAANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT
:::::::::::::::::::::::::::::::
NP_001 MKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT
10 20 30
70 80 90
pF1KB6 PEGRRITKLDQILLNGNNITMLVPGGEGPEV
:::::::::::::::::::::::::::::::
NP_001 PEGRRITKLDQILLNGNNITMLVPGGEGPEV
40 50 60
>>NP_055278 (OMIM: 607283) U6 snRNA-associated Sm-like p (102 aa)
initn: 125 init1: 125 opt: 137 Z-score: 209.3 bits: 43.5 E(85289): 6.4e-05
Smith-Waterman score: 137; 34.9% identity (57.8% similar) in 83 aa overlap (6-88:10-91)
10 20 30 40 50
pF1KB6 MAANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE
::: . ::.:. . ::.. :..:.:. : : ..:. .::.: :: :
NP_055 MADDVDQQQTTNTVEE-PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE
10 20 30 40 50
60 70 80 90
pF1KB6 FEITPEGRRITKLDQILLNGNNITMLVPGGEGPEV
: : . : . . :: :: :.:
NP_055 TVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
60 70 80 90 100
>>NP_003085 (OMIM: 128260,615059) small nuclear ribonucl (92 aa)
initn: 138 init1: 66 opt: 136 Z-score: 208.5 bits: 43.2 E(85289): 7.1e-05
Smith-Waterman score: 136; 32.9% identity (74.0% similar) in 73 aa overlap (14-82:17-87)
10 20 30 40 50
pF1KB6 MAANATTNPSQLLPLELVDKCIG--SRIHIVM--KSDKEIVGTLLGFDDFVNMVLED
:..:. . . :::.. . . . .: : ..:::...:.::.:
NP_003 MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDD
10 20 30 40 50 60
60 70 80 90
pF1KB6 VTEFEITPEGRRITKLDQILLNGNNITMLVPGGEGPEV
. :.. ..:. .: .:.:.:.:::.:
NP_003 AEEIHSKTKSRK--QLGRIMLKGDNITLLQSVSN
70 80 90
>>NP_001315567 (OMIM: 128260,615059) small nuclear ribon (79 aa)
initn: 128 init1: 66 opt: 134 Z-score: 206.6 bits: 42.6 E(85289): 9.1e-05
Smith-Waterman score: 134; 36.1% identity (77.0% similar) in 61 aa overlap (24-82:16-74)
10 20 30 40 50
pF1KB6 MAANATTNPSQLLPLELVDKCIGSRIHIVM--KSDKEIVGTLLGFDDFVNMVLEDVTEFE
:::.. . . . .: : ..:::...:.::.:. :..
NP_001 MQEWTRQKEGRELQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIH
10 20 30 40 50
60 70 80 90
pF1KB6 ITPEGRRITKLDQILLNGNNITMLVPGGEGPEV
..:. .: .:.:.:.:::.:
NP_001 SKTKSRK--QLGRIMLKGDNITLLQSVSN
60 70
>>NP_001291393 (OMIM: 128260,615059) small nuclear ribon (84 aa)
initn: 138 init1: 66 opt: 134 Z-score: 206.2 bits: 42.6 E(85289): 9.6e-05
Smith-Waterman score: 134; 36.1% identity (77.0% similar) in 61 aa overlap (24-82:21-79)
10 20 30 40 50
pF1KB6 MAANATTNPSQLLPLELVDKCIGSRIHIVM--KSDKEIVGTLLGFDDFVNMVLEDVTEFE
:::.. . . . .: : ..:::...:.::.:. :..
NP_001 MSGLGATVVQNLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIH
10 20 30 40 50
60 70 80 90
pF1KB6 ITPEGRRITKLDQILLNGNNITMLVPGGEGPEV
..:. .: .:.:.:.:::.:
NP_001 SKTKSRK--QLGRIMLKGDNITLLQSVSN
60 70 80
>>NP_001315566 (OMIM: 128260,615059) small nuclear ribon (90 aa)
initn: 138 init1: 66 opt: 134 Z-score: 205.8 bits: 42.7 E(85289): 0.0001
Smith-Waterman score: 134; 36.1% identity (77.0% similar) in 61 aa overlap (24-82:27-85)
10 20 30 40 50
pF1KB6 MAANATTNPSQLLPLELVDKCIGSRIHIVM--KSDKEIVGTLLGFDDFVNMVLEDVT
:::.. . . . .: : ..:::...:.::.:.
NP_001 MDAAKGGKRTSATVVQNLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAE
10 20 30 40 50 60
60 70 80 90
pF1KB6 EFEITPEGRRITKLDQILLNGNNITMLVPGGEGPEV
:.. ..:. .: .:.:.:.:::.:
NP_001 EIHSKTKSRK--QLGRIMLKGDNITLLQSVSN
70 80 90
>>NP_003087 (OMIM: 603542) small nuclear ribonucleoprote (76 aa)
initn: 84 init1: 59 opt: 110 Z-score: 171.9 bits: 36.1 E(85289): 0.0078
Smith-Waterman score: 110; 27.4% identity (68.5% similar) in 73 aa overlap (10-82:2-70)
10 20 30 40 50 60
pF1KB6 MAANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT
:. : :: : . ... . ... ... : : ::: :.:.:... .: ..
NP_003 MSKAHPPEL-KKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE--MA
10 20 30 40
70 80 90
pF1KB6 PEGRRITKLDQILLNGNNITMLVPGGEGPEV
:.. ... .... ::.: ::
NP_003 TSGQQ-NNIGMVVIRGNSIIMLEALERV
50 60 70
91 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 23:34:11 2016 done: Fri Nov 4 23:34:12 2016
Total Scan time: 3.670 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]