FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6718, 134 aa
  1>>>pF1KB6718     134 - 134 aa - 134 aa
Library: /omim/omim.rfq.tfa
  64369986 residues in 92320 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0221+/-0.000317; mu= 12.2951+/- 0.020
 mean_var=59.5907+/-11.673, 0's: 0 Z-trim(114.1): 42  B-trim: 0 in 0/56
 Lambda= 0.166144
 statistics sampled from 24745 (24785) to 24745 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.663), E-opt: 0.2 (0.268), width:  16
 Scan time:  3.170

The best scores are:                                      opt bits E(92320)
XP_011541676 (OMIM: 147850) interleukin-5 isoform  ( 134)  854 212.7 1.5e-55
XP_011541675 (OMIM: 147850) interleukin-5 isoform  ( 134)  854 212.7 1.5e-55
NP_000870 (OMIM: 147850) interleukin-5 precursor [ ( 134)  854 212.7 1.5e-55
XP_005272045 (OMIM: 147850) interleukin-5 isoform  ( 156)  854 212.8 1.7e-55


>>XP_011541676 (OMIM: 147850) interleukin-5 isoform X2 [  (134 aa)
 initn: 854 init1: 854 opt: 854  Z-score: 1118.8  bits: 212.7 E(92320): 1.5e-55
Smith-Waterman score: 854; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134)

               10        20        30        40        50        60
pF1KB6 MRMLLHLSLLALGAAYVYAIPTEIPTSALVKETLALLSTHRTLLIANETLRIPVPVHKNH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MRMLLHLSLLALGAAYVYAIPTEIPTSALVKETLALLSTHRTLLIANETLRIPVPVHKNH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QLCTEEIFQGIGTLESQTVQGGTVERLFKNLSLIKKYIDGQKKKCGEERRRVNQFLDYLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLCTEEIFQGIGTLESQTVQGGTVERLFKNLSLIKKYIDGQKKKCGEERRRVNQFLDYLQ
               70        80        90       100       110       120

              130    
pF1KB6 EFLGVMNTEWIIES
       ::::::::::::::
XP_011 EFLGVMNTEWIIES
              130    

>>XP_011541675 (OMIM: 147850) interleukin-5 isoform X2 [  (134 aa)
 initn: 854 init1: 854 opt: 854  Z-score: 1118.8  bits: 212.7 E(92320): 1.5e-55
Smith-Waterman score: 854; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134)

               10        20        30        40        50        60
pF1KB6 MRMLLHLSLLALGAAYVYAIPTEIPTSALVKETLALLSTHRTLLIANETLRIPVPVHKNH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MRMLLHLSLLALGAAYVYAIPTEIPTSALVKETLALLSTHRTLLIANETLRIPVPVHKNH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QLCTEEIFQGIGTLESQTVQGGTVERLFKNLSLIKKYIDGQKKKCGEERRRVNQFLDYLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLCTEEIFQGIGTLESQTVQGGTVERLFKNLSLIKKYIDGQKKKCGEERRRVNQFLDYLQ
               70        80        90       100       110       120

              130    
pF1KB6 EFLGVMNTEWIIES
       ::::::::::::::
XP_011 EFLGVMNTEWIIES
              130    

>>NP_000870 (OMIM: 147850) interleukin-5 precursor [Homo  (134 aa)
 initn: 854 init1: 854 opt: 854  Z-score: 1118.8  bits: 212.7 E(92320): 1.5e-55
Smith-Waterman score: 854; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134)

               10        20        30        40        50        60
pF1KB6 MRMLLHLSLLALGAAYVYAIPTEIPTSALVKETLALLSTHRTLLIANETLRIPVPVHKNH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MRMLLHLSLLALGAAYVYAIPTEIPTSALVKETLALLSTHRTLLIANETLRIPVPVHKNH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QLCTEEIFQGIGTLESQTVQGGTVERLFKNLSLIKKYIDGQKKKCGEERRRVNQFLDYLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 QLCTEEIFQGIGTLESQTVQGGTVERLFKNLSLIKKYIDGQKKKCGEERRRVNQFLDYLQ
               70        80        90       100       110       120

              130    
pF1KB6 EFLGVMNTEWIIES
       ::::::::::::::
NP_000 EFLGVMNTEWIIES
              130    

>>XP_005272045 (OMIM: 147850) interleukin-5 isoform X1 [  (156 aa)
 initn: 854 init1: 854 opt: 854  Z-score: 1117.8  bits: 212.8 E(92320): 1.7e-55
Smith-Waterman score: 854; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:23-156)

                                     10        20        30        
pF1KB6                       MRMLLHLSLLALGAAYVYAIPTEIPTSALVKETLALLS
                             ::::::::::::::::::::::::::::::::::::::
XP_005 MGVVVGWIGDPGSGANAERFRAMRMLLHLSLLALGAAYVYAIPTEIPTSALVKETLALLS
               10        20        30        40        50        60

       40        50        60        70        80        90        
pF1KB6 THRTLLIANETLRIPVPVHKNHQLCTEEIFQGIGTLESQTVQGGTVERLFKNLSLIKKYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 THRTLLIANETLRIPVPVHKNHQLCTEEIFQGIGTLESQTVQGGTVERLFKNLSLIKKYI
               70        80        90       100       110       120

      100       110       120       130    
pF1KB6 DGQKKKCGEERRRVNQFLDYLQEFLGVMNTEWIIES
       ::::::::::::::::::::::::::::::::::::
XP_005 DGQKKKCGEERRRVNQFLDYLQEFLGVMNTEWIIES
              130       140       150      




134 residues in 1 query   sequences
64369986 residues in 92320 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Oct 24 21:53:50 2019 done: Thu Oct 24 21:53:51 2019
 Total Scan time:  3.170 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]