FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6718, 134 aa
  1>>>pF1KB6718     134 - 134 aa - 134 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0876+/-0.000695; mu= 11.7002+/- 0.042
 mean_var=54.5343+/-10.563, 0's: 0 Z-trim(107.0): 18  B-trim: 0 in 0/52
 Lambda= 0.173676
 statistics sampled from 9408 (9416) to 9408 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.675), E-opt: 0.2 (0.282), width:  16
 Scan time:  0.780

The best scores are:                                      opt bits E(33420)
CCDS4156.1 IL5 gene_id:3567|Hs109|chr5             ( 134)  854 221.6 1.2e-58


>>CCDS4156.1 IL5 gene_id:3567|Hs109|chr5                  (134 aa)
 initn: 854 init1: 854 opt: 854  Z-score: 1166.7  bits: 221.6 E(33420): 1.2e-58
Smith-Waterman score: 854; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134)

               10        20        30        40        50        60
pF1KB6 MRMLLHLSLLALGAAYVYAIPTEIPTSALVKETLALLSTHRTLLIANETLRIPVPVHKNH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MRMLLHLSLLALGAAYVYAIPTEIPTSALVKETLALLSTHRTLLIANETLRIPVPVHKNH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QLCTEEIFQGIGTLESQTVQGGTVERLFKNLSLIKKYIDGQKKKCGEERRRVNQFLDYLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QLCTEEIFQGIGTLESQTVQGGTVERLFKNLSLIKKYIDGQKKKCGEERRRVNQFLDYLQ
               70        80        90       100       110       120

              130    
pF1KB6 EFLGVMNTEWIIES
       ::::::::::::::
CCDS41 EFLGVMNTEWIIES
              130    




134 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Oct 24 21:53:50 2019 done: Thu Oct 24 21:53:50 2019
 Total Scan time:  0.780 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]