FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6713, 80 aa
  1>>>pF1KB6713 80 - 80 aa - 80 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9357+/-0.000648; mu= 8.3961+/- 0.039
 mean_var=45.7652+/- 9.161, 0's: 0 Z-trim(108.2): 23  B-trim: 0 in 0/50
 Lambda= 0.189586
 statistics sampled from 10045 (10063) to 10045 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.724), E-opt: 0.2 (0.309), width:  16
 Scan time:  1.230

The best scores are:                                      opt bits E(32554)
CCDS3767.1 LSM6 gene_id:11157|Hs108|chr4           (  80)  521 149.5 2.1e-37
CCDS9055.1 SNRPF gene_id:6636|Hs108|chr12          (  86)  238 72.1 4.5e-14


>>CCDS3767.1 LSM6 gene_id:11157|Hs108|chr4                (80 aa)
 initn: 521 init1: 521 opt: 521  Z-score: 784.9  bits: 149.5 E(32554): 2.1e-37
Smith-Waterman score: 521; 100.0% identity (100.0% similar) in 80 aa overlap (1-80:1-80)

               10        20        30        40        50        60
pF1KB6 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY
               10        20        30        40        50        60

               70        80
pF1KB6 GDAFIRGNNVLYISTQKRRM
       ::::::::::::::::::::
CCDS37 GDAFIRGNNVLYISTQKRRM
               70        80

>>CCDS9055.1 SNRPF gene_id:6636|Hs108|chr12               (86 aa)
 initn: 236 init1: 236 opt: 238  Z-score: 366.1  bits: 72.1 E(32554): 4.5e-14
Smith-Waterman score: 238; 50.7% identity (80.8% similar) in 73 aa overlap (1-73:1-72)

               10        20        30        40        50        60
pF1KB6 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY
       :::   .:. ::. . :.::.:::. :..:.: :. .:::::. : .::::..: :... 
CCDS90 MSL-PLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHL
                10        20        30        40        50         

               70        80       
pF1KB6 GDAFIRGNNVLYISTQKRRM       
       :...:: ::::::              
CCDS90 GEVLIRCNNVLYIRGVEEEEEDGEMRE
      60        70        80      




80 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:16:06 2016 done: Sat Nov  5 18:16:06 2016
 Total Scan time:  1.230 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]