FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6712, 132 aa
  1>>>pF1KB6712 132 - 132 aa - 132 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3576+/-0.000666; mu= 13.0069+/- 0.040
 mean_var=119.8343+/-22.619, 0's: 0 Z-trim(115.8): 28  B-trim: 220 in 1/51
 Lambda= 0.117161
 statistics sampled from 16385 (16412) to 16385 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.837), E-opt: 0.2 (0.504), width:  16
 Scan time:  1.800

The best scores are:                                      opt bits E(32554)
CCDS13347.1 SLPI gene_id:6590|Hs108|chr20          ( 132) 1010 180.0 3.7e-46


>>CCDS13347.1 SLPI gene_id:6590|Hs108|chr20               (132 aa)
 initn: 1010 init1: 1010 opt: 1010  Z-score: 942.2  bits: 180.0 E(32554): 3.7e-46
Smith-Waterman score: 1010; 100.0% identity (100.0% similar) in 132 aa overlap (1-132:1-132)

               10        20        30        40        50        60
pF1KB6 MKSSGLFPFLVLLALGTLAPWAVEGSGKSFKAGVCPPKKSAQCLRYKKPECQSDWQCPGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MKSSGLFPFLVLLALGTLAPWAVEGSGKSFKAGVCPPKKSAQCLRYKKPECQSDWQCPGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 KRCCPDTCGIKCLDPVDTPNPTRRKPGKCPVTYGQCLMLNPPNFCEMDGQCKRDLKCCMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KRCCPDTCGIKCLDPVDTPNPTRRKPGKCPVTYGQCLMLNPPNFCEMDGQCKRDLKCCMG
               70        80        90       100       110       120

              130  
pF1KB6 MCGKSCVSPVKA
       ::::::::::::
CCDS13 MCGKSCVSPVKA
              130  




132 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:30:42 2016 done: Fri Nov  4 23:30:42 2016
 Total Scan time:  1.800 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]