FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6710, 130 aa
  1>>>pF1KB6710 130 - 130 aa - 130 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0626+/-0.000702; mu= 10.8274+/- 0.042
 mean_var=45.7179+/- 9.188, 0's: 0 Z-trim(106.2): 23  B-trim: 0 in 0/51
 Lambda= 0.189684
 statistics sampled from 8832 (8839) to 8832 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.674), E-opt: 0.2 (0.272), width:  16
 Scan time:  1.420

The best scores are:                                      opt bits E(32554)
CCDS10571.1 RPS15A gene_id:6210|Hs108|chr16        ( 130)  860 242.4 5.9e-65


>>CCDS10571.1 RPS15A gene_id:6210|Hs108|chr16             (130 aa)
 initn: 860 init1: 860 opt: 860  Z-score: 1279.6  bits: 242.4 E(32554): 5.9e-65
Smith-Waterman score: 860; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KB6 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 IVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 IVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKH
               70        80        90       100       110       120

              130
pF1KB6 TGGKILGFFF
       ::::::::::
CCDS10 TGGKILGFFF
              130




130 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:59:09 2016 done: Sat Nov  5 18:59:10 2016
 Total Scan time:  1.420 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]