FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6707, 79 aa
  1>>>pF1KB6707 79 - 79 aa - 79 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.2763+/-0.000253; mu= 13.2473+/- 0.016
 mean_var=50.4173+/-10.152, 0's: 0 Z-trim(120.8): 3  B-trim: 0 in 0/53
 Lambda= 0.180628
 statistics sampled from 36556 (36560) to 36556 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.812), E-opt: 0.2 (0.429), width:  16
 Scan time:  3.970

The best scores are:                                      opt bits E(85289)
NP_001818 (OMIM: 116901) cyclin-dependent kinases  (  79)  565 153.6 3.1e-38
NP_001817 (OMIM: 116900) cyclin-dependent kinases  (  79)  466 127.8 1.8e-30


>>NP_001818 (OMIM: 116901) cyclin-dependent kinases regu  (79 aa)
 initn: 565 init1: 565 opt: 565  Z-score: 807.3  bits: 153.6 E(85289): 3.1e-38
Smith-Waterman score: 565; 100.0% identity (100.0% similar) in 79 aa overlap (1-79:1-79)

               10        20        30        40        50        60
pF1KB6 MAHKQIYYSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAHKQIYYSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIH
               10        20        30        40        50        60

               70         
pF1KB6 EPEPHILLFRRPLPKDQQK
       :::::::::::::::::::
NP_001 EPEPHILLFRRPLPKDQQK
               70         

>>NP_001817 (OMIM: 116900) cyclin-dependent kinases regu  (79 aa)
 initn: 486 init1: 458 opt: 466  Z-score: 667.9  bits: 127.8 E(85289): 1.8e-30
Smith-Waterman score: 466; 81.0% identity (91.1% similar) in 79 aa overlap (1-79:1-79)

               10        20        30        40        50        60
pF1KB6 MAHKQIYYSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIH
       :.:::::::::: ::..::::::::....: ::::::::: ::: :::::: ::::::::
NP_001 MSHKQIYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHLMSESEWRNLGVQQSQGWVHYMIH
               10        20        30        40        50        60

               70         
pF1KB6 EPEPHILLFRRPLPKDQQK
       :::::::::::::::  .:
NP_001 EPEPHILLFRRPLPKKPKK
               70         




79 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:15:31 2016 done: Sat Nov  5 18:15:32 2016
 Total Scan time:  3.970 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]