FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6707, 79 aa
  1>>>pF1KB6707 79 - 79 aa - 79 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.3885+/-0.000496; mu= 12.6143+/- 0.030
 mean_var=49.7337+/- 9.829, 0's: 0 Z-trim(113.7): 5  B-trim: 0 in 0/51
 Lambda= 0.181865
 statistics sampled from 14351 (14353) to 14351 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.822), E-opt: 0.2 (0.441), width:  16
 Scan time:  1.300

The best scores are:                                      opt bits E(32554)
CCDS6682.1 CKS2 gene_id:1164|Hs108|chr9            (  79)  565 154.5 6.2e-39
CCDS1077.1 CKS1B gene_id:1163|Hs108|chr1           (  79)  466 128.5 4.1e-31


>>CCDS6682.1 CKS2 gene_id:1164|Hs108|chr9                 (79 aa)
 initn: 565 init1: 565 opt: 565  Z-score: 812.5  bits: 154.5 E(32554): 6.2e-39
Smith-Waterman score: 565; 100.0% identity (100.0% similar) in 79 aa overlap (1-79:1-79)

               10        20        30        40        50        60
pF1KB6 MAHKQIYYSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MAHKQIYYSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIH
               10        20        30        40        50        60

               70         
pF1KB6 EPEPHILLFRRPLPKDQQK
       :::::::::::::::::::
CCDS66 EPEPHILLFRRPLPKDQQK
               70         

>>CCDS1077.1 CKS1B gene_id:1163|Hs108|chr1                (79 aa)
 initn: 486 init1: 458 opt: 466  Z-score: 672.1  bits: 128.5 E(32554): 4.1e-31
Smith-Waterman score: 466; 81.0% identity (91.1% similar) in 79 aa overlap (1-79:1-79)

               10        20        30        40        50        60
pF1KB6 MAHKQIYYSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIH
       :.:::::::::: ::..::::::::....: ::::::::: ::: :::::: ::::::::
CCDS10 MSHKQIYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHLMSESEWRNLGVQQSQGWVHYMIH
               10        20        30        40        50        60

               70         
pF1KB6 EPEPHILLFRRPLPKDQQK
       :::::::::::::::  .:
CCDS10 EPEPHILLFRRPLPKKPKK
               70         




79 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:15:30 2016 done: Sat Nov  5 18:15:31 2016
 Total Scan time:  1.300 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]