Result of FASTA (ccds) for
pF1KB6704
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6704, 128 aa
1>>>pF1KB6704 128 - 128 aa - 128 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1945+/-0.000685; mu= 10.8026+/- 0.041
mean_var=57.2232+/-11.660, 0's: 0 Z-trim(109.2): 84 B-trim: 390 in 1/50
Lambda= 0.169546
statistics sampled from 10623 (10724) to 10623 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.731), E-opt: 0.2 (0.329), width: 16
Scan time: 1.620
The best scores are: opt bits E(32554)
CCDS14608.1 SH2D1A gene_id:4068|Hs108|chrX ( 128) 852 216.0 5e-57
CCDS48162.1 SH2D1A gene_id:4068|Hs108|chrX ( 125) 818 207.7 1.5e-54
CCDS30928.1 SH2D1B gene_id:117157|Hs108|chr1 ( 132) 350 93.2 4.7e-20
CCDS77543.1 INPP5D gene_id:3635|Hs108|chr2 (1188) 289 78.7 1e-14
CCDS74672.1 INPP5D gene_id:3635|Hs108|chr2 (1189) 286 78.0 1.7e-14
CCDS8213.1 INPPL1 gene_id:3636|Hs108|chr11 (1258) 271 74.3 2.2e-13
>>CCDS14608.1 SH2D1A gene_id:4068|Hs108|chrX (128 aa)
initn: 852 init1: 852 opt: 852 Z-score: 1137.4 bits: 216.0 E(32554): 5e-57
Smith-Waterman score: 852; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)
10 20 30 40 50 60
pF1KB6 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TGSWSAETAPGVHKRYFRKIKNLISAFQKPDQGIVIPLQYPVEKKSSARSTQGTTGIRED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 TGSWSAETAPGVHKRYFRKIKNLISAFQKPDQGIVIPLQYPVEKKSSARSTQGTTGIRED
70 80 90 100 110 120
pF1KB6 PDVCLKAP
::::::::
CCDS14 PDVCLKAP
>>CCDS48162.1 SH2D1A gene_id:4068|Hs108|chrX (125 aa)
initn: 746 init1: 746 opt: 818 Z-score: 1092.6 bits: 207.7 E(32554): 1.5e-54
Smith-Waterman score: 818; 97.7% identity (97.7% similar) in 128 aa overlap (1-128:1-125)
10 20 30 40 50 60
pF1KB6 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TGSWSAETAPGVHKRYFRKIKNLISAFQKPDQGIVIPLQYPVEKKSSARSTQGTTGIRED
::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::
CCDS48 TGSWSAETAPGVHKRYFRKIKNLISAFQKPDQGIVIPLQYPVEKKSSARSTQG---IRED
70 80 90 100 110
pF1KB6 PDVCLKAP
::::::::
CCDS48 PDVCLKAP
120
>>CCDS30928.1 SH2D1B gene_id:117157|Hs108|chr1 (132 aa)
initn: 376 init1: 346 opt: 350 Z-score: 473.5 bits: 93.2 E(32554): 4.7e-20
Smith-Waterman score: 350; 44.2% identity (72.6% similar) in 113 aa overlap (1-113:1-112)
10 20 30 40 50 60
pF1KB6 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTE
:: . :::..... : ::: :.::..:::::::.::: :::: ... .::::. . .
CCDS30 MD-LPYYHGRLTKQDCETLLLKEGVDGNFLLRDSESIPGVLCLCVSFKNIVYTYRIFREK
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 TGSWSAETAPGVHKRYFRKIKNLISAFQKPDQGIVIPLQYPVEKKSSARSTQGTTGIRED
: . .:: : :. : ..:.::: :.::.::.:. : :... : . .:
CCDS30 HGYYRIQTAEGSPKQVFPSLKELISKFEKPNQGMVVHLLKPIKRTSPSLRWRGLKLELET
60 70 80 90 100 110
pF1KB6 PDVCLKAP
CCDS30 FVNSNSDYVDVLP
120 130
>>CCDS77543.1 INPP5D gene_id:3635|Hs108|chr2 (1188 aa)
initn: 286 init1: 286 opt: 289 Z-score: 377.8 bits: 78.7 E(32554): 1e-14
Smith-Waterman score: 289; 38.7% identity (68.9% similar) in 119 aa overlap (8-123:7-125)
10 20 30 40 50 60
pF1KB6 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTE
::.:.: .:.:: :: :::.:.: :::. .: :::::.. .::::. .:
CCDS77 MVPCWNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNE
10 20 30 40 50
70 80 90 100 110
pF1KB6 TGSWSAETAPGVHKRYFRKIKNLISAFQKPDQGIVIPLQYPV---EKKSSARSTQGTTGI
....... :: :.: :. .:: ..: ..:.: ::::: :. .. . : ..
CCDS77 DDKFTVQASEGVSMRFFTKLDQLIEFYKKENMGLVTHLQYPVPLEEEDTGDDPEEDTESV
60 70 80 90 100 110
120
pF1KB6 REDPDVCLKAP
:..
CCDS77 VSPPELPPRNIPLTASSCEAKEVPFSNENPRATETSRPSLSETLFQRLQSMDTSGLPEEH
120 130 140 150 160 170
>>CCDS74672.1 INPP5D gene_id:3635|Hs108|chr2 (1189 aa)
initn: 286 init1: 286 opt: 286 Z-score: 373.8 bits: 78.0 E(32554): 1.7e-14
Smith-Waterman score: 286; 45.3% identity (74.7% similar) in 95 aa overlap (8-102:7-101)
10 20 30 40 50 60
pF1KB6 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTE
::.:.: .:.:: :: :::.:.: :::. .: :::::.. .::::. .:
CCDS74 MVPCWNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNE
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 TGSWSAETAPGVHKRYFRKIKNLISAFQKPDQGIVIPLQYPVEKKSSARSTQGTTGIRED
....... :: :.: :. .:: ..: ..:.: :::::
CCDS74 DDKFTVQASEGVSMRFFTKLDQLIEFYKKENMGLVTHLQYPVPLEEEDTGDDPEEDTVES
60 70 80 90 100 110
pF1KB6 PDVCLKAP
CCDS74 VVSPPELPPRNIPLTASSCEAKEVPFSNENPRATETSRPSLSETLFQRLQSMDTSGLPEE
120 130 140 150 160 170
>>CCDS8213.1 INPPL1 gene_id:3636|Hs108|chr11 (1258 aa)
initn: 271 init1: 271 opt: 271 Z-score: 353.6 bits: 74.3 E(32554): 2.2e-13
Smith-Waterman score: 271; 43.3% identity (70.1% similar) in 97 aa overlap (7-103:22-118)
10 20 30 40
pF1KB6 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCV
:: .:: ..:.:: .: :::.:.:::::: :.. :::
CCDS82 MASACGAPGPGGALGSQAPSWYHRDLSRAAAEELLARAGRDGSFLVRDSESVAGAFALCV
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB6 LYHGYIYTYRVSQTETGSWSAETAPGVHKRYFRKIKNLISAFQKPDQGIVIPLQYPVEKK
::. ...:::. ...:. :: : :. . .::. . .:.::.: : :::
CCDS82 LYQKHVHTYRILPDGEDFLAVQTSQGVPVRRFQTLGELIGLYAQPNQGLVCALLLPVEGE
70 80 90 100 110 120
110 120
pF1KB6 SSARSTQGTTGIREDPDVCLKAP
CCDS82 REPDPPDDRDASDGEDEKPPLPPRSGSTSISAPTGPSSPLPAPETPTAPAAESAPNGLST
130 140 150 160 170 180
128 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 23:27:20 2016 done: Fri Nov 4 23:27:20 2016
Total Scan time: 1.620 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]