Result of FASTA (ccds) for
pF1KB6702
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6702, 128 aa
1>>>pF1KB6702 128 - 128 aa - 128 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8271+/-0.000653; mu= 13.0197+/- 0.039
mean_var=56.2154+/-10.806, 0's: 0 Z-trim(109.5): 27 B-trim: 3 in 1/51
Lambda= 0.171059
statistics sampled from 10935 (10960) to 10935 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.337), width: 16
Scan time: 1.690
The best scores are: opt bits E(32554)
CCDS3563.1 PPBP gene_id:5473|Hs108|chr4 ( 128) 821 210.0 3.2e-55
CCDS47074.1 CXCL1 gene_id:2919|Hs108|chr4 ( 107) 299 81.2 1.7e-16
CCDS34006.1 CXCL5 gene_id:6374|Hs108|chr4 ( 114) 284 77.5 2.3e-15
CCDS34008.1 CXCL2 gene_id:2920|Hs108|chr4 ( 107) 275 75.2 1e-14
CCDS34007.1 CXCL3 gene_id:2921|Hs108|chr4 ( 107) 264 72.5 6.6e-14
CCDS3562.1 PF4 gene_id:5196|Hs108|chr4 ( 101) 255 70.3 2.9e-13
CCDS3560.1 CXCL6 gene_id:6372|Hs108|chr4 ( 114) 251 69.3 6.4e-13
CCDS3561.1 PF4V1 gene_id:5197|Hs108|chr4 ( 104) 237 65.8 6.5e-12
CCDS34005.1 CXCL8 gene_id:3576|Hs108|chr4 ( 99) 221 61.9 9.7e-11
>>CCDS3563.1 PPBP gene_id:5473|Hs108|chr4 (128 aa)
initn: 821 init1: 821 opt: 821 Z-score: 1104.9 bits: 210.0 E(32554): 3.2e-55
Smith-Waterman score: 821; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)
10 20 30 40 50 60
pF1KB6 MSLRLDTTPSCNSARPLHALQVLLLLSLLLTALASSTKGQTKRNLAKGKEESLDSDLYAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MSLRLDTTPSCNSARPLHALQVLLLLSLLLTALASSTKGQTKRNLAKGKEESLDSDLYAE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LRCMCIKTTSGIHPKNIQSLEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LRCMCIKTTSGIHPKNIQSLEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQKK
70 80 90 100 110 120
pF1KB6 LAGDESAD
::::::::
CCDS35 LAGDESAD
>>CCDS47074.1 CXCL1 gene_id:2919|Hs108|chr4 (107 aa)
initn: 350 init1: 296 opt: 299 Z-score: 409.8 bits: 81.2 E(32554): 1.7e-16
Smith-Waterman score: 299; 52.4% identity (81.7% similar) in 82 aa overlap (45-126:26-106)
20 30 40 50 60 70
pF1KB6 RPLHALQVLLLLSLLLTALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKTTSGIHP
.: :.. . ... .::::.:..: .::::
CCDS47 MARAALSAAPSNPRLLRVALLLLLLVAAGRRAA-GASVATELRCQCLQTLQGIHP
10 20 30 40 50
80 90 100 110 120
pF1KB6 KNIQSLEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQKKLAGDESAD
:::::..: . : :: :.:::::::.::: ::.: .: .:::..: : .:.:
CCDS47 KNIQSVNVKSPGPHCAQTEVIATLKNGRKACLNPASPIVKKIIEKMLNSDKSN
60 70 80 90 100
>>CCDS34006.1 CXCL5 gene_id:6374|Hs108|chr4 (114 aa)
initn: 327 init1: 284 opt: 284 Z-score: 389.4 bits: 77.5 E(32554): 2.3e-15
Smith-Waterman score: 284; 56.2% identity (90.6% similar) in 64 aa overlap (60-123:46-109)
30 40 50 60 70 80
pF1KB6 LTALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKTTSGIHPKNIQSLEVIGKGTHC
::::.:..::.:.::: :..:.:.. : .:
CCDS34 SSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVHPKMISNLQVFAIGPQC
20 30 40 50 60 70
90 100 110 120
pF1KB6 NQVEVIATLKDGRKICLDPDAPRIKKIVQKKLAGDESAD
..:::.:.::.:..:::::.:: .::..:: : :
CCDS34 SKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN
80 90 100 110
>>CCDS34008.1 CXCL2 gene_id:2920|Hs108|chr4 (107 aa)
initn: 306 init1: 270 opt: 275 Z-score: 377.8 bits: 75.2 E(32554): 1e-14
Smith-Waterman score: 275; 48.8% identity (79.3% similar) in 82 aa overlap (45-126:25-106)
20 30 40 50 60 70
pF1KB6 RPLHALQVLLLLSLLLTALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKTTSGIHP
:. ..... . : .::::.:..: .:::
CCDS34 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHL
10 20 30 40 50
80 90 100 110 120
pF1KB6 KNIQSLEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQKKLAGDESAD
:::::..: . : :: :.:::::::.:.: ::.: .: .:::..: : . .:
CCDS34 KNIQSVKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN
60 70 80 90 100
>>CCDS34007.1 CXCL3 gene_id:2921|Hs108|chr4 (107 aa)
initn: 315 init1: 261 opt: 264 Z-score: 363.1 bits: 72.5 E(32554): 6.6e-14
Smith-Waterman score: 264; 48.1% identity (81.8% similar) in 77 aa overlap (45-121:25-101)
20 30 40 50 60 70
pF1KB6 RPLHALQVLLLLSLLLTALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKTTSGIHP
:. ..... ... .::::.:..: .:::
CCDS34 MAHATLSAAPSNPRLLRVALLLLLLVAASRRAAGASVVTELRCQCLQTLQGIHL
10 20 30 40 50
80 90 100 110 120
pF1KB6 KNIQSLEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQKKLAGDESAD
:::::..: . : :: :.:::::::.:.: ::.: .: ..::..: :
CCDS34 KNIQSVNVRSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN
60 70 80 90 100
>>CCDS3562.1 PF4 gene_id:5196|Hs108|chr4 (101 aa)
initn: 245 init1: 212 opt: 255 Z-score: 351.5 bits: 70.3 E(32554): 2.9e-13
Smith-Waterman score: 255; 52.9% identity (80.0% similar) in 70 aa overlap (52-121:30-99)
30 40 50 60 70 80
pF1KB6 VLLLLSLLLTALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKTTSGIHPKNIQSLE
: ... ..:.:.:.:::: ..:..: :::
CCDS35 MSSAAGFCASRPGLLFLGLLLLPLVVAFASAEAEEDGDLQCLCVKTTSQVRPRHITSLE
10 20 30 40 50
90 100 110 120
pF1KB6 VIGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQKKLAGDESAD
:: : :: ...:::::.::::::: .:: :::..: :
CCDS35 VIKAGPHCPTAQLIATLKNGRKICLDLQAPLYKKIIKKLLES
60 70 80 90 100
>>CCDS3560.1 CXCL6 gene_id:6372|Hs108|chr4 (114 aa)
initn: 297 init1: 248 opt: 251 Z-score: 345.4 bits: 69.3 E(32554): 6.4e-13
Smith-Waterman score: 256; 40.5% identity (65.3% similar) in 121 aa overlap (7-121:2-107)
10 20 30 40 50
pF1KB6 MSLRLDTTPSCNSAR---PLHALQVLLLLSLLLTA---LASSTKGQTKRNLAKGKEESLD
. :: .:: : .: .:: : :::: :::. : .
CCDS35 MSLPSSRAARVPGPSGSLCALLALLLLLTPPGPLASA--GPV-------------
10 20 30 40
60 70 80 90 100 110
pF1KB6 SDLYAELRCMCIKTTSGIHPKNIQSLEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRIK
: . .:::: :...: ..::.: .:.:. : .:..:::.:.::.:...::::.:: .:
CCDS35 SAVLTELRCTCLRVTLRVNPKTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLK
50 60 70 80 90 100
120
pF1KB6 KIVQKKLAGDESAD
:..:: :
CCDS35 KVIQKILDSGNKKN
110
>>CCDS3561.1 PF4V1 gene_id:5197|Hs108|chr4 (104 aa)
initn: 209 init1: 196 opt: 237 Z-score: 327.3 bits: 65.8 E(32554): 6.5e-12
Smith-Waterman score: 241; 43.6% identity (70.3% similar) in 101 aa overlap (21-121:15-102)
10 20 30 40 50 60
pF1KB6 MSLRLDTTPSCNSARPLHALQVLLLLSLLLTALASSTKGQTKRNLAKGKEESLDSDLYAE
: .:.:.::: .. . .:... : :.::
CCDS35 MSSAARSRLTRATRQEMLFLALLLLPVVVA--------FARAEAEE-DGDL---
10 20 30 40
70 80 90 100 110 120
pF1KB6 LRCMCIKTTSGIHPKNIQSLEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQKK
.:.:.:::: ..:..: ::::: : :: ...:::::.::::::: .: :::....
CCDS35 -QCLCVKTTSQVRPRHITSLEVIKAGPHCPTAQLIATLKNGRKICLDLQALLYKKIIKEH
50 60 70 80 90 100
pF1KB6 LAGDESAD
:
CCDS35 LES
>>CCDS34005.1 CXCL8 gene_id:3576|Hs108|chr4 (99 aa)
initn: 199 init1: 150 opt: 221 Z-score: 306.3 bits: 61.9 E(32554): 9.7e-11
Smith-Waterman score: 221; 47.8% identity (75.4% similar) in 69 aa overlap (60-127:31-99)
30 40 50 60 70 80
pF1KB6 LTALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKTTSG-IHPKNIQSLEVIGKGTH
::::.:::: : .::: :. :.:: .: :
CCDS34 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPH
10 20 30 40 50 60
90 100 110 120
pF1KB6 CNQVEVIATLKDGRKICLDPDAPRIKKIVQKKLAGDESAD
: ..:.:. :.:::..:::: ....:.: : :..
CCDS34 CANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS
70 80 90
128 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 23:26:12 2016 done: Fri Nov 4 23:26:12 2016
Total Scan time: 1.690 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]