Result of FASTA (omim) for
pF1KB6698
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6698, 445 aa
1>>>pF1KB6698 445 - 445 aa - 445 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3677+/-0.000381; mu= 17.6619+/- 0.024
mean_var=70.2920+/-13.659, 0's: 0 Z-trim(112.4): 68 B-trim: 147 in 1/52
Lambda= 0.152975
statistics sampled from 21301 (21369) to 21301 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.618), E-opt: 0.2 (0.251), width: 16
Scan time: 7.410
The best scores are: opt bits E(85289)
NP_001060 (OMIM: 615101,615763) tubulin beta-2A ch ( 445) 2994 670.1 3.3e-192
NP_821080 (OMIM: 610031,612850) tubulin beta-2B ch ( 445) 2983 667.6 1.8e-191
NP_006079 (OMIM: 602660) tubulin beta-4B chain [Ho ( 445) 2910 651.5 1.3e-186
NP_006078 (OMIM: 602662) tubulin beta-4A chain iso ( 444) 2866 641.8 1e-183
NP_821133 (OMIM: 156610,191130,615771) tubulin bet ( 444) 2866 641.8 1e-183
NP_001276058 (OMIM: 602662) tubulin beta-4A chain ( 444) 2866 641.8 1e-183
NP_001276056 (OMIM: 602662) tubulin beta-4A chain ( 489) 2866 641.8 1.1e-183
NP_001276052 (OMIM: 602662) tubulin beta-4A chain ( 495) 2866 641.8 1.1e-183
NP_006077 (OMIM: 600638,602661,614039) tubulin bet ( 450) 2793 625.7 7.5e-179
NP_115914 (OMIM: 615103) tubulin beta-6 chain isof ( 446) 2745 615.1 1.1e-175
NP_001290453 (OMIM: 615103) tubulin beta-6 chain i ( 446) 2745 615.1 1.1e-175
NP_001280141 (OMIM: 156610,191130,615771) tubulin ( 464) 2741 614.2 2.2e-175
NP_817124 (OMIM: 616768,616780) tubulin beta-8 cha ( 444) 2711 607.6 2.1e-173
NP_001280143 (OMIM: 156610,191130,615771) tubulin ( 400) 2496 560.1 3.7e-159
NP_110400 (OMIM: 612901,613112) tubulin beta-1 cha ( 451) 2416 542.5 8.4e-154
NP_001276060 (OMIM: 602662) tubulin beta-4A chain ( 372) 2397 538.3 1.3e-152
NP_001280144 (OMIM: 156610,191130,615771) tubulin ( 372) 2397 538.3 1.3e-152
NP_001280145 (OMIM: 156610,191130,615771) tubulin ( 372) 2397 538.3 1.3e-152
NP_001276059 (OMIM: 602662) tubulin beta-4A chain ( 372) 2397 538.3 1.3e-152
NP_001297244 (OMIM: 615101,615763) tubulin beta-2A ( 360) 2356 529.2 6.7e-150
NP_001184110 (OMIM: 600638,602661,614039) tubulin ( 378) 2344 526.6 4.4e-149
NP_001290456 (OMIM: 615103) tubulin beta-6 chain i ( 374) 2319 521.1 2e-147
XP_011517761 (OMIM: 616768,616780) PREDICTED: tubu ( 372) 2293 515.3 1.1e-145
XP_016883574 (OMIM: 612901,613112) PREDICTED: tubu ( 429) 2262 508.5 1.4e-143
NP_001290457 (OMIM: 615103) tubulin beta-6 chain i ( 381) 2180 490.4 3.5e-138
NP_001290455 (OMIM: 615103) tubulin beta-6 chain i ( 409) 2171 488.4 1.5e-137
XP_016871681 (OMIM: 616768,616780) PREDICTED: tubu ( 332) 2015 453.9 2.8e-127
XP_016871682 (OMIM: 616768,616780) PREDICTED: tubu ( 332) 2015 453.9 2.8e-127
NP_001290458 (OMIM: 615103) tubulin beta-6 chain i ( 300) 1826 412.2 9.4e-115
NP_001290459 (OMIM: 615103) tubulin beta-6 chain i ( 300) 1826 412.2 9.4e-115
XP_011517762 (OMIM: 616768,616780) PREDICTED: tubu ( 291) 1637 370.5 3.3e-102
NP_006073 (OMIM: 602530) tubulin alpha-1B chain [H ( 451) 1277 291.1 3.9e-78
NP_006000 (OMIM: 602529,611603) tubulin alpha-1A c ( 451) 1269 289.4 1.3e-77
NP_001257328 (OMIM: 602529,611603) tubulin alpha-1 ( 451) 1269 289.4 1.3e-77
NP_005991 (OMIM: 191110,616208) tubulin alpha-4A c ( 448) 1267 288.9 1.8e-77
NP_005992 (OMIM: 602528) tubulin alpha-3C/D chain ( 450) 1258 286.9 7.1e-77
NP_061816 (OMIM: 605742,613180) tubulin alpha-8 ch ( 449) 1240 283.0 1.1e-75
NP_001265481 (OMIM: 191110,616208) tubulin alpha-4 ( 433) 1215 277.4 5e-74
NP_001257329 (OMIM: 602529,611603) tubulin alpha-1 ( 416) 1162 265.7 1.6e-70
NP_001180343 (OMIM: 605742,613180) tubulin alpha-8 ( 383) 1082 248.1 3.1e-65
NP_001061 (OMIM: 191135,615412) tubulin gamma-1 ch ( 451) 1006 231.3 4e-60
NP_057521 (OMIM: 605785) tubulin gamma-2 chain iso ( 451) 996 229.1 1.8e-59
NP_001280142 (OMIM: 156610,191130,615771) tubulin ( 242) 820 190.1 5.4e-48
XP_016860313 (OMIM: 191110,616208) PREDICTED: tubu ( 295) 767 178.5 2.1e-44
NP_001307438 (OMIM: 605785) tubulin gamma-2 chain ( 460) 625 147.2 8.2e-35
NP_001290454 (OMIM: 615103) tubulin beta-6 chain i ( 104) 568 134.3 1.5e-31
XP_011522916 (OMIM: 605785) PREDICTED: tubulin gam ( 298) 520 124.0 5.5e-28
XP_016879942 (OMIM: 605785) PREDICTED: tubulin gam ( 298) 520 124.0 5.5e-28
NP_057346 (OMIM: 607345) tubulin epsilon chain [Ho ( 475) 517 123.4 1.3e-27
XP_016879945 (OMIM: 605785) PREDICTED: tubulin gam ( 274) 480 115.1 2.3e-25
>>NP_001060 (OMIM: 615101,615763) tubulin beta-2A chain (445 aa)
initn: 2994 init1: 2994 opt: 2994 Z-score: 3571.8 bits: 670.1 E(85289): 3.3e-192
Smith-Waterman score: 2994; 100.0% identity (100.0% similar) in 445 aa overlap (1-445:1-445)
10 20 30 40 50 60
pF1KB6 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
370 380 390 400 410 420
430 440
pF1KB6 EYQQYQDATADEQGEFEEEEGEDEA
:::::::::::::::::::::::::
NP_001 EYQQYQDATADEQGEFEEEEGEDEA
430 440
>>NP_821080 (OMIM: 610031,612850) tubulin beta-2B chain (445 aa)
initn: 2983 init1: 2983 opt: 2983 Z-score: 3558.6 bits: 667.6 E(85289): 1.8e-191
Smith-Waterman score: 2983; 99.6% identity (99.8% similar) in 445 aa overlap (1-445:1-445)
10 20 30 40 50 60
pF1KB6 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
NP_821 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
:::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
NP_821 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
370 380 390 400 410 420
430 440
pF1KB6 EYQQYQDATADEQGEFEEEEGEDEA
:::::::::::::::::::::::::
NP_821 EYQQYQDATADEQGEFEEEEGEDEA
430 440
>>NP_006079 (OMIM: 602660) tubulin beta-4B chain [Homo s (445 aa)
initn: 2910 init1: 2910 opt: 2910 Z-score: 3471.6 bits: 651.5 E(85289): 1.3e-186
Smith-Waterman score: 2910; 96.4% identity (99.1% similar) in 445 aa overlap (1-445:1-445)
10 20 30 40 50 60
pF1KB6 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV
::::::.:::::::::::::::::::::::::::.:::::::::::::::::::.:.:::
NP_006 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV
:::.:::::::::::::::::::::::::::::::::::::::::::::.::::::::::
NP_006 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
:::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
NP_006 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
NP_006 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
:::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::
NP_006 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
370 380 390 400 410 420
430 440
pF1KB6 EYQQYQDATADEQGEFEEEEGEDEA
::::::::::.:.:::::: :. :
NP_006 EYQQYQDATAEEEGEFEEEAEEEVA
430 440
>>NP_006078 (OMIM: 602662) tubulin beta-4A chain isoform (444 aa)
initn: 2873 init1: 2841 opt: 2866 Z-score: 3419.1 bits: 641.8 E(85289): 1e-183
Smith-Waterman score: 2866; 95.1% identity (98.9% similar) in 445 aa overlap (1-445:1-444)
10 20 30 40 50 60
pF1KB6 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV
::::::.:::::::::::::::::::::::::::.:::::::::::::::::::.:..::
NP_006 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
:::.::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
NP_006 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV
:::.::::::::::::::::::::::::::::::::::.::::::::::.::::::::::
NP_006 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
:::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
NP_006 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
NP_006 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
:::::::::::::::.:::::::::::::::.::.:::::::::::::::::::::::::
NP_006 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
370 380 390 400 410 420
430 440
pF1KB6 EYQQYQDATADEQGEFEEEEGEDEA
:::::::::: :.:::::: :. :
NP_006 EYQQYQDATA-EEGEFEEEAEEEVA
430 440
>>NP_821133 (OMIM: 156610,191130,615771) tubulin beta ch (444 aa)
initn: 2863 init1: 2863 opt: 2866 Z-score: 3419.1 bits: 641.8 E(85289): 1e-183
Smith-Waterman score: 2866; 95.3% identity (99.1% similar) in 445 aa overlap (1-445:1-444)
10 20 30 40 50 60
pF1KB6 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV
::::::::::::::::::::::::::::::::::.:::::::::.::.::::::.:.:::
NP_821 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV
:::.:::::::::::::::::::::::::::::::::::::::::::::.::::::::::
NP_821 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
:::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
NP_821 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
::::::::::::::::::::::::::::::::::::::::::::::::::::.::.::::
NP_821 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
:::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::
NP_821 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
:::..:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 LKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
370 380 390 400 410 420
430 440
pF1KB6 EYQQYQDATADEQGEFEEEEGEDEA
::::::::::.:. .: :: .:.::
NP_821 EYQQYQDATAEEEEDFGEE-AEEEA
430 440
>>NP_001276058 (OMIM: 602662) tubulin beta-4A chain isof (444 aa)
initn: 2873 init1: 2841 opt: 2866 Z-score: 3419.1 bits: 641.8 E(85289): 1e-183
Smith-Waterman score: 2866; 95.1% identity (98.9% similar) in 445 aa overlap (1-445:1-444)
10 20 30 40 50 60
pF1KB6 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV
::::::.:::::::::::::::::::::::::::.:::::::::::::::::::.:..::
NP_001 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
:::.::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
NP_001 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV
:::.::::::::::::::::::::::::::::::::::.::::::::::.::::::::::
NP_001 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
:::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
NP_001 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
NP_001 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
:::::::::::::::.:::::::::::::::.::.:::::::::::::::::::::::::
NP_001 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
370 380 390 400 410 420
430 440
pF1KB6 EYQQYQDATADEQGEFEEEEGEDEA
:::::::::: :.:::::: :. :
NP_001 EYQQYQDATA-EEGEFEEEAEEEVA
430 440
>>NP_001276056 (OMIM: 602662) tubulin beta-4A chain isof (489 aa)
initn: 2873 init1: 2841 opt: 2866 Z-score: 3418.5 bits: 641.8 E(85289): 1.1e-183
Smith-Waterman score: 2866; 95.1% identity (98.9% similar) in 445 aa overlap (1-445:46-489)
10 20 30
pF1KB6 MREIVHIQAGQCGNQIGAKFWEVISDEHGI
::::::.:::::::::::::::::::::::
NP_001 AVSAASSTLAAAAAPRARATAAASTLSATAMREIVHLQAGQCGNQIGAKFWEVISDEHGI
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB6 DPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNF
::::.:::::::::::::::::::.:..:::::.::::::::::::::::::::::::::
NP_001 DPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNF
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB6 VFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTL
::::::::::::::::::::::::.::::::::.::::::::::::::::::::::::::
NP_001 VFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTL
140 150 160 170 180 190
160 170 180 190 200 210
pF1KB6 LISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDI
::::::::.::::::::::.:::::::::::::::::::::::::::::: :::::::::
NP_001 LISKIREEFPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI
200 210 220 230 240 250
220 230 240 250 260 270
pF1KB6 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF
260 270 280 290 300 310
280 290 300 310 320 330
pF1KB6 APLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQM
:::::::::::::::::::::::::.:::::::::::::::::::.::::::::::::::
NP_001 APLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQM
320 330 340 350 360 370
340 350 360 370 380 390
pF1KB6 LNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFR
:.::.::::::::::::::::::::::::::::.::::::::::::::::::::::::::
NP_001 LSVQSKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFR
380 390 400 410 420 430
400 410 420 430 440
pF1KB6 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEQGEFEEEEGEDEA
:::::::::::::::::::::::::::::::::::::::: :.:::::: :. :
NP_001 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA-EEGEFEEEAEEEVA
440 450 460 470 480
>>NP_001276052 (OMIM: 602662) tubulin beta-4A chain isof (495 aa)
initn: 2873 init1: 2841 opt: 2866 Z-score: 3418.4 bits: 641.8 E(85289): 1.1e-183
Smith-Waterman score: 2866; 95.1% identity (98.9% similar) in 445 aa overlap (1-445:52-495)
10 20 30
pF1KB6 MREIVHIQAGQCGNQIGAKFWEVISDEHGI
::::::.:::::::::::::::::::::::
NP_001 AVSAASSTLAAAAAPRARATAAASTLSATAMREIVHLQAGQCGNQIGAKFWEVISDEHGI
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB6 DPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNF
::::.:::::::::::::::::::.:..:::::.::::::::::::::::::::::::::
NP_001 DPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNF
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB6 VFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTL
::::::::::::::::::::::::.::::::::.::::::::::::::::::::::::::
NP_001 VFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTL
150 160 170 180 190 200
160 170 180 190 200 210
pF1KB6 LISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDI
::::::::.::::::::::.:::::::::::::::::::::::::::::: :::::::::
NP_001 LISKIREEFPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI
210 220 230 240 250 260
220 230 240 250 260 270
pF1KB6 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF
270 280 290 300 310 320
280 290 300 310 320 330
pF1KB6 APLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQM
:::::::::::::::::::::::::.:::::::::::::::::::.::::::::::::::
NP_001 APLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQM
330 340 350 360 370 380
340 350 360 370 380 390
pF1KB6 LNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFR
:.::.::::::::::::::::::::::::::::.::::::::::::::::::::::::::
NP_001 LSVQSKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFR
390 400 410 420 430 440
400 410 420 430 440
pF1KB6 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEQGEFEEEEGEDEA
:::::::::::::::::::::::::::::::::::::::: :.:::::: :. :
NP_001 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA-EEGEFEEEAEEEVA
450 460 470 480 490
>>NP_006077 (OMIM: 600638,602661,614039) tubulin beta-3 (450 aa)
initn: 2784 init1: 2784 opt: 2793 Z-score: 3331.9 bits: 625.7 E(85289): 7.5e-179
Smith-Waterman score: 2793; 91.9% identity (98.2% similar) in 446 aa overlap (1-445:1-446)
10 20 30 40 50 60
pF1KB6 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV
::::::::::::::::::::::::::::::::.:.: ::::::::::.::::::...:::
NP_006 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
::::::::::::::::::: ::..::::::.:::::::::::::::::::::::::::::
NP_006 PRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV
::: :.::::::::::::::::::::::::::::.::::::::::::::.::::::::::
NP_006 RKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
::::::::.::::::::::: ::::::::::::::::.:::::::::::::::::::: :
NP_006 EPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
::::::::::::::::::::::::::::::::::.::::::::::::::::::::.::::
NP_006 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
::::::::::::::..::::::::::::::: .:.:::::::::::::::.:::::::::
NP_006 AACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
370 380 390 400 410 420
430 440
pF1KB6 EYQQYQDATADEQGE-FEEEEGEDEA
::::::::::.:.:: .:..: :.::
NP_006 EYQQYQDATAEEEGEMYEDDEEESEAQGPK
430 440 450
>>NP_115914 (OMIM: 615103) tubulin beta-6 chain isoform (446 aa)
initn: 2725 init1: 2725 opt: 2745 Z-score: 3274.8 bits: 615.1 E(85289): 1.1e-175
Smith-Waterman score: 2745; 91.2% identity (97.1% similar) in 443 aa overlap (1-442:1-443)
10 20 30 40 50 60
pF1KB6 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV
:::::::::::::::::.::::::::::::::.:.: ::: ::::::::::::....:::
NP_115 MREIVHIQAGQCGNQIGTKFWEVISDEHGIDPAGGYVGDSALQLERINVYYNESSSQKYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
::: :::::::::::::::::::.::::::.:::.:::::::::::::::::::.:::::
NP_115 PRAALVDLEPGTMDSVRSGPFGQLFRPDNFIFGQTGAGNNWAKGHYTEGAELVDAVLDVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV
::: : ::::::::::::::::::::::::::::::::.:::::::::::::::::::::
NP_115 RKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVMPSPKVSDTVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
:::::::::::::::::::: ::::::::::::::::::::::::::::::::::::: :
NP_115 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTSL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
:::::::::::::::::::::::::::::::::::::::::::::::::::::::..:::
NP_115 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDARNMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
::::::::::::::..::: ::::::::::: .:.:::::::::::::::.:::::::::
NP_115 AACDPRHGRYLTVATVFRGPMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
:::..::::::::::::::::::::.:::::::::::.::::::::::::::::::::::
NP_115 LKMASTFIGNSTAIQELFKRISEQFSAMFRRKAFLHWFTGEGMDEMEFTEAESNMNDLVS
370 380 390 400 410 420
430 440
pF1KB6 EYQQYQDATADEQGE-FEEEEGEDEA
::::::::::.. : ::.:: :
NP_115 EYQQYQDATANDGEEAFEDEEEEIDG
430 440
445 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 02:02:43 2016 done: Sat Nov 5 02:02:45 2016
Total Scan time: 7.410 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]