FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6693, 429 aa
  1>>>pF1KB6693 429 - 429 aa - 429 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0329+/-0.000499; mu= 4.6132+/- 0.031
 mean_var=188.9614+/-37.106, 0's: 0 Z-trim(113.7): 33  B-trim: 63 in 1/51
 Lambda= 0.093301
 statistics sampled from 23099 (23119) to 23099 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.627), E-opt: 0.2 (0.271), width:  16
 Scan time:  8.180

The best scores are:                                      opt bits E(85289)
NP_060480 (OMIM: 606621) intraflagellar transport  ( 429) 2777 386.8 5.6e-107


>>NP_060480 (OMIM: 606621) intraflagellar transport prot  (429 aa)
 initn: 2777 init1: 2777 opt: 2777  Z-score: 2041.6  bits: 386.8 E(85289): 5.6e-107
Smith-Waterman score: 2777; 100.0% identity (100.0% similar) in 429 aa overlap (1-429:1-429)

               10        20        30        40        50        60
pF1KB6 MTAALAVVTTSGLEDGVPRSRGEGTGEVVLERGPGAAYHMFVVMEDLVEKLKLLRYEEEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MTAALAVVTTSGLEDGVPRSRGEGTGEVVLERGPGAAYHMFVVMEDLVEKLKLLRYEEEF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LRKSNLKAPSRHYFALPTNPGEQFYMFCTLAAWLINKAGRPFEQPQEYDDPNATISNILS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LRKSNLKAPSRHYFALPTNPGEQFYMFCTLAAWLINKAGRPFEQPQEYDDPNATISNILS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ELRSFGRTADFPPSKLKSGYGEHVCYVLDCFAEEALKYIGFTWKRPIYPVEELEEESVAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 ELRSFGRTADFPPSKLKSGYGEHVCYVLDCFAEEALKYIGFTWKRPIYPVEELEEESVAE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 DDAELTLNKVDEEFVEEETDNEENFIDLNVLKAQTYHLDMNETAKQEDILESTTDAAEWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 DDAELTLNKVDEEFVEEETDNEENFIDLNVLKAQTYHLDMNETAKQEDILESTTDAAEWS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 LEVERVLPQLKVTIRTDNKDWRIHVDQMHQHRSGIESALKETKGFLDKLHNEITRTLEKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LEVERVLPQLKVTIRTDNKDWRIHVDQMHQHRSGIESALKETKGFLDKLHNEITRTLEKI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 SSREKYINNQLENLVQEYRAAQAQLSEAKERYQQGNGGVTERTRLLSEVMEELEKVKQEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SSREKYINNQLENLVQEYRAAQAQLSEAKERYQQGNGGVTERTRLLSEVMEELEKVKQEM
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 EEKGSSMTDGAPLVKIKQSLTKLKQETVEMDIRIGIVEHTLLQSKLKEKSNMTRNMHATV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 EEKGSSMTDGAPLVKIKQSLTKLKQETVEMDIRIGIVEHTLLQSKLKEKSNMTRNMHATV
              370       380       390       400       410       420

                
pF1KB6 IPEPATGFY
       :::::::::
NP_060 IPEPATGFY
                




429 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:24:46 2016 done: Sat Nov  5 11:24:47 2016
 Total Scan time:  8.180 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]