FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6693, 429 aa
  1>>>pF1KB6693 429 - 429 aa - 429 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0127+/-0.00118; mu= 4.8086+/- 0.070
 mean_var=161.9042+/-33.359, 0's: 0 Z-trim(106.3): 37  B-trim: 80 in 2/48
 Lambda= 0.100796
 statistics sampled from 8917 (8929) to 8917 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.633), E-opt: 0.2 (0.274), width:  16
 Scan time:  3.090

The best scores are:                                      opt bits E(32554)
CCDS2951.1 IFT57 gene_id:55081|Hs108|chr3          ( 429) 2777 416.3  3e-116


>>CCDS2951.1 IFT57 gene_id:55081|Hs108|chr3               (429 aa)
 initn: 2777 init1: 2777 opt: 2777  Z-score: 2200.6  bits: 416.3 E(32554): 3e-116
Smith-Waterman score: 2777; 100.0% identity (100.0% similar) in 429 aa overlap (1-429:1-429)

               10        20        30        40        50        60
pF1KB6 MTAALAVVTTSGLEDGVPRSRGEGTGEVVLERGPGAAYHMFVVMEDLVEKLKLLRYEEEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 MTAALAVVTTSGLEDGVPRSRGEGTGEVVLERGPGAAYHMFVVMEDLVEKLKLLRYEEEF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LRKSNLKAPSRHYFALPTNPGEQFYMFCTLAAWLINKAGRPFEQPQEYDDPNATISNILS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 LRKSNLKAPSRHYFALPTNPGEQFYMFCTLAAWLINKAGRPFEQPQEYDDPNATISNILS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ELRSFGRTADFPPSKLKSGYGEHVCYVLDCFAEEALKYIGFTWKRPIYPVEELEEESVAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 ELRSFGRTADFPPSKLKSGYGEHVCYVLDCFAEEALKYIGFTWKRPIYPVEELEEESVAE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 DDAELTLNKVDEEFVEEETDNEENFIDLNVLKAQTYHLDMNETAKQEDILESTTDAAEWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 DDAELTLNKVDEEFVEEETDNEENFIDLNVLKAQTYHLDMNETAKQEDILESTTDAAEWS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 LEVERVLPQLKVTIRTDNKDWRIHVDQMHQHRSGIESALKETKGFLDKLHNEITRTLEKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 LEVERVLPQLKVTIRTDNKDWRIHVDQMHQHRSGIESALKETKGFLDKLHNEITRTLEKI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 SSREKYINNQLENLVQEYRAAQAQLSEAKERYQQGNGGVTERTRLLSEVMEELEKVKQEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 SSREKYINNQLENLVQEYRAAQAQLSEAKERYQQGNGGVTERTRLLSEVMEELEKVKQEM
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 EEKGSSMTDGAPLVKIKQSLTKLKQETVEMDIRIGIVEHTLLQSKLKEKSNMTRNMHATV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 EEKGSSMTDGAPLVKIKQSLTKLKQETVEMDIRIGIVEHTLLQSKLKEKSNMTRNMHATV
              370       380       390       400       410       420

                
pF1KB6 IPEPATGFY
       :::::::::
CCDS29 IPEPATGFY
                




429 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:24:45 2016 done: Sat Nov  5 11:24:46 2016
 Total Scan time:  3.090 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]