Result of FASTA (ccds) for
pF1KB6691
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6691, 428 aa
1>>>pF1KB6691 428 - 428 aa - 428 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1431+/-0.000966; mu= 13.5035+/- 0.058
mean_var=95.3711+/-18.623, 0's: 0 Z-trim(107.0): 56 B-trim: 5 in 1/50
Lambda= 0.131331
statistics sampled from 9283 (9325) to 9283 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.286), width: 16
Scan time: 2.570
The best scores are: opt bits E(32554)
CCDS53486.1 SMYD3 gene_id:64754|Hs108|chr1 ( 428) 2940 567.6 8.4e-162
CCDS31083.1 SMYD3 gene_id:64754|Hs108|chr1 ( 369) 2548 493.2 1.7e-139
CCDS31022.1 SMYD2 gene_id:56950|Hs108|chr1 ( 433) 671 137.6 2.2e-32
CCDS82480.1 SMYD1 gene_id:150572|Hs108|chr2 ( 477) 654 134.5 2.2e-31
CCDS33240.1 SMYD1 gene_id:150572|Hs108|chr2 ( 490) 455 96.8 5.1e-20
>>CCDS53486.1 SMYD3 gene_id:64754|Hs108|chr1 (428 aa)
initn: 2940 init1: 2940 opt: 2940 Z-score: 3018.3 bits: 567.6 E(32554): 8.4e-162
Smith-Waterman score: 2940; 99.8% identity (100.0% similar) in 428 aa overlap (1-428:1-428)
10 20 30 40 50 60
pF1KB6 MEPLKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLM
::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MEPLKVEKFATAKRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 RCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCKPRYPPDSVRLLGRVVFKLMDGAPSES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 RCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCKPRYPPDSVRLLGRVVFKLMDGAPSES
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 EKLYSFYDLESNINKLTEDKKEGLRQLVMTFQHFMREEIQDASQLPPAFDLFEAFAKVIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EKLYSFYDLESNINKLTEDKKEGLRQLVMTFQHFMREEIQDASQLPPAFDLFEAFAKVIC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 NSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 NSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 DMLMTSEERRKQLRDQYCFECDCFRCQTQDKDADMLTGDEQVWKEVQESLKKIEELKAHW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DMLMTSEERRKQLRDQYCFECDCFRCQTQDKDADMLTGDEQVWKEVQESLKKIEELKAHW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 KWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 FFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 FFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEE
370 380 390 400 410 420
pF1KB6 CDANIRAS
::::::::
CCDS53 CDANIRAS
>>CCDS31083.1 SMYD3 gene_id:64754|Hs108|chr1 (369 aa)
initn: 2548 init1: 2548 opt: 2548 Z-score: 2617.8 bits: 493.2 E(32554): 1.7e-139
Smith-Waterman score: 2548; 100.0% identity (100.0% similar) in 369 aa overlap (60-428:1-369)
30 40 50 60 70 80
pF1KB6 LFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRECKC
::::::::::::::::::::::::::::::
CCDS31 MRCSQCRVAKYCSAKCQKKAWPDHKRECKC
10 20 30
90 100 110 120 130 140
pF1KB6 LKSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYDLESNINKLTEDKKEGLRQLVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LKSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYDLESNINKLTEDKKEGLRQLVM
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB6 TFQHFMREEIQDASQLPPAFDLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TFQHFMREEIQDASQLPPAFDLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCD
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB6 PNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRCQTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRCQTQ
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB6 DKDADMLTGDEQVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DKDADMLTGDEQVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLK
220 230 240 250 260 270
330 340 350 360 370 380
pF1KB6 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQA
280 290 300 310 320 330
390 400 410 420
pF1KB6 MKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANIRAS
:::::::::::::::::::::::::::::::::::::::
CCDS31 MKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANIRAS
340 350 360
>>CCDS31022.1 SMYD2 gene_id:56950|Hs108|chr1 (433 aa)
initn: 811 init1: 329 opt: 671 Z-score: 694.8 bits: 137.6 E(32554): 2.2e-32
Smith-Waterman score: 822; 32.8% identity (63.4% similar) in 424 aa overlap (6-414:9-426)
10 20 30 40 50
pF1KB6 MEPLKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKE
.:.: . ..: ::::. :.. :.::: ::.. . :: :. :. ::
CCDS31 MRAEGLGGLERFCSPGKGRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKE
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 KLMRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCKPRY-PPDSVRLLGRVVFKL-MDG
: .:..:. : ::...:::. :: :: ::. . . : ..::: .:.. : .
CCDS31 GLSKCGRCKQAFYCNVECQKEDWPMHKLECSPMVVFGENWNPSETVRLTARILAKQKIHP
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 APSESEKLYSFYDLESNINKLTEDKKEGLRQLVMTFQHFMREEIQDASQLPPAFDLFEAF
. :::: . ..::...:: ..::. ... . ...::. ... .: .: :
CCDS31 ERTPSEKLLAVKEFESHLDKLDNEKKDLIQSDIAALHHFYSKHLG----FPDNDSLVVLF
130 140 150 160 170
180 190 200 210 220 230
pF1KB6 AKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEEL
:.: ::.::: . :....: ...:...:.:::: :: ....: .:::..:. :::.
CCDS31 AQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEV
180 190 200 210 220 230
240 250 260 270 280
pF1KB6 TICYLDMLMTSEERRKQLRDQYCFECDCFRCQTQDKDADMLT----GD----EQVWKEVQ
:.:.:. .:.: .:::.: : :.: .: :.::: . .: : . :.
CCDS31 FTSYIDLLYPTEDRNDRLRDSYFFTCECQECTTKDKDKAKVEIRKLSDPPKAEAIRDMVR
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB6 ESLKKIEELK--AHWKWE-QVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLL
. . :::.. :.: ..: .:. . : . : :.:.:... :: .:. .
CCDS31 YARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDW
300 310 320 330 340 350
350 360 370 380 390 400
pF1KB6 EEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAM--KNLRLAFDIMRV
: :: :: . ..:: .: . . .:.:.: . :. .: : :. :. ::.:
CCDS31 EGALQYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYM--GLEHKAAGEKALKKAIAIMEV
360 370 380 390 400 410
410 420
pF1KB6 THGREHSLIEDLILLLEECDANIRAS
.::..: : ..
CCDS31 AHGKDHPYISEIKQEIESH
420 430
>>CCDS82480.1 SMYD1 gene_id:150572|Hs108|chr2 (477 aa)
initn: 721 init1: 325 opt: 654 Z-score: 676.8 bits: 134.5 E(32554): 2.2e-31
Smith-Waterman score: 817; 31.5% identity (64.6% similar) in 435 aa overlap (6-426:9-436)
10 20 30 40 50
pF1KB6 MEPLKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKE
:: :.. ..: ::.:. . ....: . .: . . :: :. .:
CCDS82 MTIGRMENVEVFTAEGKGRGLKATKEFWAADIIFAERAYSAVVFDSLVNFVCHTCFKRQE
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 KLMRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCKPRYPPDSVRLLGRVVFKLMDGAP
:: ::.::. :.::. ::: :: .:: ::. .: . : ...:: .:..... .
CCDS82 KLHRCGQCKFAHYCDRTCQKDAWLNHKNECSAIKR-YGKVPNENIRLAARIMWRVEREGT
70 80 90 100 110
120 130 140 150 160 170
pF1KB6 SESEK-LYSFYDLESNINKLTEDKKEGLRQLVMTFQHFMREEIQDASQLPPAFDLFEAFA
. .: : : ::....... :.... :: : :: .. . :. :. . . :.
CCDS82 GLTEGCLVSVDDLQNHVEHFGEEEQKDLRVDVDTFLQYWPPQSQQFSMQY----ISHIFG
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 KVICNSFTICNAE-MQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEEL
. ::.::. . . .: ::::..:...:.::.: :::...::. .. :::. : ::::
CCDS82 VINCNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGKIELRALGKISEGEEL
180 190 200 210 220 230
240 250 260 270 280
pF1KB6 TICYLDMLMTSEERRKQLRDQYCFECDCFRCQTQDKDADMLTG-------DEQVWKEV--
:. :.:.: .::::..::. :: :.: : .:: . :: :.. : ...: ::.
CCDS82 TVSYIDFLNVSEERKRQLKKQYYFDCTCEHCQKKLKD-DLFLGVKDNPKPSQEVVKEMIQ
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB6 --QESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLL
...:.::.. ... ...:. .:. . .. . : :::.:..:. . .. : .
CCDS82 FSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNIYMLRMLSIVSEVLSYLQAF
300 310 320 330 340 350
350 360 370 380 390 400
pF1KB6 EEALFYGTRTMEPY-RIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVT
::: ::. : .. : ... :.. . :. ::..: . : : . . . :. :. ::
CCDS82 EEASFYARRMVDGYMKLYHPNNAQL-GMAVMRAGLTNWHAGNIEVGHGMICKAYAILLVT
360 370 380 390 400 410
410 420
pF1KB6 HGREHSLIEDLILLLEECDANIRAS
:: : . .:: . . . ..:
CCDS82 HGPSHPITKDLEAMRVQTEMELRMFRQNEFMYYKMREAALNNQPMQVMAEPSNEPSPALF
420 430 440 450 460 470
>>CCDS33240.1 SMYD1 gene_id:150572|Hs108|chr2 (490 aa)
initn: 710 init1: 241 opt: 455 Z-score: 472.9 bits: 96.8 E(32554): 5.1e-20
Smith-Waterman score: 789; 31.0% identity (62.7% similar) in 448 aa overlap (6-426:9-449)
10 20 30 40 50
pF1KB6 MEPLKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKE
:: :.. ..: ::.:. . ....: . .: . . :: :. .:
CCDS33 MTIGRMENVEVFTAEGKGRGLKATKEFWAADIIFAERAYSAVVFDSLVNFVCHTCFKRQE
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 KLMRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCKPRYPPDSVRLLGRVVFKLMDGAP
:: ::.::. :.::. ::: :: .:: ::. .: . : ...:: .:..... .
CCDS33 KLHRCGQCKFAHYCDRTCQKDAWLNHKNECSAIKR-YGKVPNENIRLAARIMWRVEREGT
70 80 90 100 110
120 130 140 150 160 170
pF1KB6 SESEK-LYSFYDLESNINKLTEDKKEGLRQLVMTFQHFMREEIQDASQLPPAFDLFEAFA
. .: : : ::....... :.... :: : :: .. . :. :. . . :.
CCDS33 GLTEGCLVSVDDLQNHVEHFGEEEQKDLRVDVDTFLQYWPPQSQQFSMQY----ISHIFG
120 130 140 150 160 170
180 190 200 210 220
pF1KB6 KVICNSFTICNAE-MQEVGVGLYPSISLLNHSCDPNCSIVFN-GPH------------LL
. ::.::. . . .: ::::..:...:.::.: :::...:: : : .
CCDS33 VINCNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIE
180 190 200 210 220 230
230 240 250 260 270
pF1KB6 LRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRCQTQDKDADMLTG----
:::. : :::::. :.:.: .::::..::. :: :.: : .:: . :: :.. :
CCDS33 LRALGKISEGEELTVSYIDFLNVSEERKRQLKKQYYFDCTCEHCQKKLKD-DLFLGVKDN
240 250 260 270 280 290
280 290 300 310 320 330
pF1KB6 ---DEQVWKEV----QESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVL
...: ::. ...:.::.. ... ...:. .:. . .. . : :::.:..:
CCDS33 PKPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNIYMLRML
300 310 320 330 340 350
340 350 360 370 380 390
pF1KB6 DCAMDACINLGLLEEALFYGTRTMEPY-RIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAM
. . .. : .::: ::. : .. : ... :.. . :. ::..: . : : . .
CCDS33 SIVSEVLSYLQAFEEASFYARRMVDGYMKLYHPNNAQL-GMAVMRAGLTNWHAGNIEVGH
360 370 380 390 400 410
400 410 420
pF1KB6 KNLRLAFDIMRVTHGREHSLIEDLILLLEECDANIRAS
. :. :. :::: : . .:: . . . ..:
CCDS33 GMICKAYAILLVTHGPSHPITKDLEAMRVQTEMELRMFRQNEFMYYKMREAALNNQPMQV
420 430 440 450 460 470
CCDS33 MAEPSNEPSPALFHKKQ
480 490
428 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 11:23:54 2016 done: Sat Nov 5 11:23:54 2016
Total Scan time: 2.570 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]