FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6673, 427 aa
  1>>>pF1KB6673 427 - 427 aa - 427 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2058+/-0.00031; mu= 18.5608+/- 0.019
 mean_var=71.4483+/-14.102, 0's: 0 Z-trim(117.5): 8  B-trim: 0 in 0/53
 Lambda= 0.151732
 statistics sampled from 29579 (29584) to 29579 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.347), width:  16
 Scan time:  7.320

The best scores are:                                      opt bits E(85289)
NP_002901 (OMIM: 312420) N-acylglucosamine 2-epime ( 427) 3045 675.4 7.3e-194
XP_016885187 (OMIM: 312420) PREDICTED: N-acylgluco ( 417) 2977 660.5 2.2e-189


>>NP_002901 (OMIM: 312420) N-acylglucosamine 2-epimerase  (427 aa)
 initn: 3045 init1: 3045 opt: 3045  Z-score: 3601.4  bits: 675.4 E(85289): 7.3e-194
Smith-Waterman score: 3045; 100.0% identity (100.0% similar) in 427 aa overlap (1-427:1-427)

               10        20        30        40        50        60
pF1KB6 MSKGLPARQDMEKERETLQAWKERVGQELDRVVAFWMEHSHDQEHGGFFTCLGREGRVYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MSKGLPARQDMEKERETLQAWKERVGQELDRVVAFWMEHSHDQEHGGFFTCLGREGRVYD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DLKYVWLQGRQVWMYCRLYRTFERFRHAQLLDAAKAGGEFLLRYARVAPPGKKCAFVLTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 DLKYVWLQGRQVWMYCRLYRTFERFRHAQLLDAAKAGGEFLLRYARVAPPGKKCAFVLTR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 DGRPVKVQRTIFSECFYTMAMNELWRATGEVRYQTEAVEMMDQIVHWVQEDASGLGRPQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 DGRPVKVQRTIFSECFYTMAMNELWRATGEVRYQTEAVEMMDQIVHWVQEDASGLGRPQL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 QGAPAAEPMAVPMMLLNLVEQLGEADEELAGKYAELGDWCARRILQHVQRDGQAVLENVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 QGAPAAEPMAVPMMLLNLVEQLGEADEELAGKYAELGDWCARRILQHVQRDGQAVLENVS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 EGGKELPGCLGRQQNPGHTLEAGWFLLRHCIRKGDPELRAHVIDKFLLLPFHSGWDPDHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 EGGKELPGCLGRQQNPGHTLEAGWFLLRHCIRKGDPELRAHVIDKFLLLPFHSGWDPDHG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 GLFYFQDADNFCPTQLEWAMKLWWPHSEAMIAFLMGYSDSGDPVLLRLFYQVAEYTFRQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GLFYFQDADNFCPTQLEWAMKLWWPHSEAMIAFLMGYSDSGDPVLLRLFYQVAEYTFRQF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 RDPEYGEWFGYLSREGKVALSIKGGPFKGCFHVPRCLAMCEEMLGALLSRPAPAPSPAPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 RDPEYGEWFGYLSREGKVALSIKGGPFKGCFHVPRCLAMCEEMLGALLSRPAPAPSPAPT
              370       380       390       400       410       420

              
pF1KB6 PACRGAE
       :::::::
NP_002 PACRGAE
              

>>XP_016885187 (OMIM: 312420) PREDICTED: N-acylglucosami  (417 aa)
 initn: 2977 init1: 2977 opt: 2977  Z-score: 3521.1  bits: 660.5 E(85289): 2.2e-189
Smith-Waterman score: 2977; 100.0% identity (100.0% similar) in 417 aa overlap (11-427:1-417)

               10        20        30        40        50        60
pF1KB6 MSKGLPARQDMEKERETLQAWKERVGQELDRVVAFWMEHSHDQEHGGFFTCLGREGRVYD
                 ::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016           MEKERETLQAWKERVGQELDRVVAFWMEHSHDQEHGGFFTCLGREGRVYD
                         10        20        30        40        50

               70        80        90       100       110       120
pF1KB6 DLKYVWLQGRQVWMYCRLYRTFERFRHAQLLDAAKAGGEFLLRYARVAPPGKKCAFVLTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DLKYVWLQGRQVWMYCRLYRTFERFRHAQLLDAAKAGGEFLLRYARVAPPGKKCAFVLTR
               60        70        80        90       100       110

              130       140       150       160       170       180
pF1KB6 DGRPVKVQRTIFSECFYTMAMNELWRATGEVRYQTEAVEMMDQIVHWVQEDASGLGRPQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DGRPVKVQRTIFSECFYTMAMNELWRATGEVRYQTEAVEMMDQIVHWVQEDASGLGRPQL
              120       130       140       150       160       170

              190       200       210       220       230       240
pF1KB6 QGAPAAEPMAVPMMLLNLVEQLGEADEELAGKYAELGDWCARRILQHVQRDGQAVLENVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QGAPAAEPMAVPMMLLNLVEQLGEADEELAGKYAELGDWCARRILQHVQRDGQAVLENVS
              180       190       200       210       220       230

              250       260       270       280       290       300
pF1KB6 EGGKELPGCLGRQQNPGHTLEAGWFLLRHCIRKGDPELRAHVIDKFLLLPFHSGWDPDHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EGGKELPGCLGRQQNPGHTLEAGWFLLRHCIRKGDPELRAHVIDKFLLLPFHSGWDPDHG
              240       250       260       270       280       290

              310       320       330       340       350       360
pF1KB6 GLFYFQDADNFCPTQLEWAMKLWWPHSEAMIAFLMGYSDSGDPVLLRLFYQVAEYTFRQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GLFYFQDADNFCPTQLEWAMKLWWPHSEAMIAFLMGYSDSGDPVLLRLFYQVAEYTFRQF
              300       310       320       330       340       350

              370       380       390       400       410       420
pF1KB6 RDPEYGEWFGYLSREGKVALSIKGGPFKGCFHVPRCLAMCEEMLGALLSRPAPAPSPAPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RDPEYGEWFGYLSREGKVALSIKGGPFKGCFHVPRCLAMCEEMLGALLSRPAPAPSPAPT
              360       370       380       390       400       410

              
pF1KB6 PACRGAE
       :::::::
XP_016 PACRGAE
              




427 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:20:53 2016 done: Sat Nov  5 11:20:54 2016
 Total Scan time:  7.320 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]