FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6673, 427 aa
  1>>>pF1KB6673 427 - 427 aa - 427 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7390+/-0.000714; mu= 15.4826+/- 0.043
 mean_var=75.0062+/-14.963, 0's: 0 Z-trim(110.6): 4  B-trim: 4 in 1/50
 Lambda= 0.148090
 statistics sampled from 11696 (11697) to 11696 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.724), E-opt: 0.2 (0.359), width:  16
 Scan time:  2.780

The best scores are:                                      opt bits E(32554)
CCDS14738.2 RENBP gene_id:5973|Hs108|chrX          ( 427) 3045 659.6 1.6e-189


>>CCDS14738.2 RENBP gene_id:5973|Hs108|chrX               (427 aa)
 initn: 3045 init1: 3045 opt: 3045  Z-score: 3515.9  bits: 659.6 E(32554): 1.6e-189
Smith-Waterman score: 3045; 100.0% identity (100.0% similar) in 427 aa overlap (1-427:1-427)

               10        20        30        40        50        60
pF1KB6 MSKGLPARQDMEKERETLQAWKERVGQELDRVVAFWMEHSHDQEHGGFFTCLGREGRVYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MSKGLPARQDMEKERETLQAWKERVGQELDRVVAFWMEHSHDQEHGGFFTCLGREGRVYD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DLKYVWLQGRQVWMYCRLYRTFERFRHAQLLDAAKAGGEFLLRYARVAPPGKKCAFVLTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DLKYVWLQGRQVWMYCRLYRTFERFRHAQLLDAAKAGGEFLLRYARVAPPGKKCAFVLTR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 DGRPVKVQRTIFSECFYTMAMNELWRATGEVRYQTEAVEMMDQIVHWVQEDASGLGRPQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DGRPVKVQRTIFSECFYTMAMNELWRATGEVRYQTEAVEMMDQIVHWVQEDASGLGRPQL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 QGAPAAEPMAVPMMLLNLVEQLGEADEELAGKYAELGDWCARRILQHVQRDGQAVLENVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QGAPAAEPMAVPMMLLNLVEQLGEADEELAGKYAELGDWCARRILQHVQRDGQAVLENVS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 EGGKELPGCLGRQQNPGHTLEAGWFLLRHCIRKGDPELRAHVIDKFLLLPFHSGWDPDHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EGGKELPGCLGRQQNPGHTLEAGWFLLRHCIRKGDPELRAHVIDKFLLLPFHSGWDPDHG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 GLFYFQDADNFCPTQLEWAMKLWWPHSEAMIAFLMGYSDSGDPVLLRLFYQVAEYTFRQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GLFYFQDADNFCPTQLEWAMKLWWPHSEAMIAFLMGYSDSGDPVLLRLFYQVAEYTFRQF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 RDPEYGEWFGYLSREGKVALSIKGGPFKGCFHVPRCLAMCEEMLGALLSRPAPAPSPAPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RDPEYGEWFGYLSREGKVALSIKGGPFKGCFHVPRCLAMCEEMLGALLSRPAPAPSPAPT
              370       380       390       400       410       420

              
pF1KB6 PACRGAE
       :::::::
CCDS14 PACRGAE
              




427 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:20:52 2016 done: Sat Nov  5 11:20:53 2016
 Total Scan time:  2.780 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]