Result of FASTA (omim) for
pF1KB6669
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6669, 425 aa
1>>>pF1KB6669 425 - 425 aa - 425 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9240+/-0.000405; mu= 14.4099+/- 0.025
mean_var=83.2272+/-16.766, 0's: 0 Z-trim(112.4): 24 B-trim: 965 in 1/48
Lambda= 0.140586
statistics sampled from 21247 (21270) to 21247 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.627), E-opt: 0.2 (0.249), width: 16
Scan time: 9.010
The best scores are: opt bits E(85289)
NP_060296 (OMIM: 616066) spermatogenesis- and ooge ( 425) 2779 573.7 3e-163
NP_001269076 (OMIM: 616066) spermatogenesis- and o ( 225) 1374 288.6 1.1e-77
XP_005263460 (OMIM: 610224) PREDICTED: spermatogen ( 409) 159 42.3 0.0027
XP_011517000 (OMIM: 610224) PREDICTED: spermatogen ( 409) 159 42.3 0.0027
NP_001012415 (OMIM: 610224) spermatogenesis- and o ( 328) 157 41.9 0.0029
NP_001095147 (OMIM: 610224) spermatogenesis- and o ( 387) 157 41.9 0.0034
XP_005260242 (OMIM: 604745) PREDICTED: transcripti ( 499) 153 41.2 0.0073
NP_006593 (OMIM: 604745) transcription factor-like ( 500) 153 41.2 0.0073
>>NP_060296 (OMIM: 616066) spermatogenesis- and oogenesi (425 aa)
initn: 2779 init1: 2779 opt: 2779 Z-score: 3051.9 bits: 573.7 E(85289): 3e-163
Smith-Waterman score: 2779; 100.0% identity (100.0% similar) in 425 aa overlap (1-425:1-425)
10 20 30 40 50 60
pF1KB6 MASSIICQEHCQISGQAKIDILLVGDVTVGYLADTVQKLFANIAEVTITISDTKEAAALL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MASSIICQEHCQISGQAKIDILLVGDVTVGYLADTVQKLFANIAEVTITISDTKEAAALL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 DDCIFNMVLLKVPSSLSAEELEAIKLIRFGKKKNTHSLFVFIIPENFKGCISGHGMDIAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 DDCIFNMVLLKVPSSLSAEELEAIKLIRFGKKKNTHSLFVFIIPENFKGCISGHGMDIAL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TEPLTMEKMSNVVKYWTTCPSNTVKTENATGPEELGLPLQRSYSEHLGYFPTDLFACSES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 TEPLTMEKMSNVVKYWTTCPSNTVKTENATGPEELGLPLQRSYSEHLGYFPTDLFACSES
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 LRNGNGLELNASLSEFEKNKKISLLHSSKEKLRRERIKYCCEQLRTLLPYVKGRKNDAAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LRNGNGLELNASLSEFEKNKKISLLHSSKEKLRRERIKYCCEQLRTLLPYVKGRKNDAAS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 VLEATVDYVKYIREKISPAVMAQITEALQSNMRFCKKQQTPIELSLPGTVMAQRENSVMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 VLEATVDYVKYIREKISPAVMAQITEALQSNMRFCKKQQTPIELSLPGTVMAQRENSVMS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 TYSPERGLQFLTNTCWNGCSTPDAESSLDEAVRVPSSSASENAIGDPYKTHISSAALSLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 TYSPERGLQFLTNTCWNGCSTPDAESSLDEAVRVPSSSASENAIGDPYKTHISSAALSLN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 SLHTVRYYSKVTPSYDATAVTNQNISIHLPSAMPPVSKLLPRHCTSGLGQTCTTHPNCLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SLHTVRYYSKVTPSYDATAVTNQNISIHLPSAMPPVSKLLPRHCTSGLGQTCTTHPNCLQ
370 380 390 400 410 420
pF1KB6 QFWAY
:::::
NP_060 QFWAY
>>NP_001269076 (OMIM: 616066) spermatogenesis- and oogen (225 aa)
initn: 1374 init1: 1374 opt: 1374 Z-score: 1516.0 bits: 288.6 E(85289): 1.1e-77
Smith-Waterman score: 1374; 100.0% identity (100.0% similar) in 214 aa overlap (1-214:1-214)
10 20 30 40 50 60
pF1KB6 MASSIICQEHCQISGQAKIDILLVGDVTVGYLADTVQKLFANIAEVTITISDTKEAAALL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASSIICQEHCQISGQAKIDILLVGDVTVGYLADTVQKLFANIAEVTITISDTKEAAALL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 DDCIFNMVLLKVPSSLSAEELEAIKLIRFGKKKNTHSLFVFIIPENFKGCISGHGMDIAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DDCIFNMVLLKVPSSLSAEELEAIKLIRFGKKKNTHSLFVFIIPENFKGCISGHGMDIAL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TEPLTMEKMSNVVKYWTTCPSNTVKTENATGPEELGLPLQRSYSEHLGYFPTDLFACSES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TEPLTMEKMSNVVKYWTTCPSNTVKTENATGPEELGLPLQRSYSEHLGYFPTDLFACSES
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 LRNGNGLELNASLSEFEKNKKISLLHSSKEKLRRERIKYCCEQLRTLLPYVKGRKNDAAS
::::::::::::::::::::::::::::::::::
NP_001 LRNGNGLELNASLSEFEKNKKISLLHSSKEKLRRLYRKHSSFCFW
190 200 210 220
250 260 270 280 290 300
pF1KB6 VLEATVDYVKYIREKISPAVMAQITEALQSNMRFCKKQQTPIELSLPGTVMAQRENSVMS
>>XP_005263460 (OMIM: 610224) PREDICTED: spermatogenesis (409 aa)
initn: 175 init1: 142 opt: 159 Z-score: 180.3 bits: 42.3 E(85289): 0.0027
Smith-Waterman score: 166; 25.9% identity (54.4% similar) in 193 aa overlap (152-344:10-180)
130 140 150 160 170 180
pF1KB6 EPLTMEKMSNVVKYWTTCPSNTVKTENATGPEELGLPLQRSYSEHLGYFPTDLFACSESL
:: .: :. . : . : : .:
XP_005 MASRCSEPYPEVSRIPTVRGCN---GSLSGALSCCEDSA
10 20 30
190 200 210 220 230 240
pF1KB6 RNGNGLELNASLSEFEKNKKISLLHSSKEKLRRERIKYCCEQLRTLLPYVKGRKNDAASV
: :.: ...: .. . : .: ::.:.. ::.::.::: ::..: :::
XP_005 R-GSGPPKAPTVAEGPSSCLRRNVISERE--RRKRMSLSCERLRALLPQFDGRREDMASV
40 50 60 70 80 90
250 260 270 280 290 300
pF1KB6 LEATVDYVKYIREKISPAVMAQITEALQSNMRFCKKQQTPIELSLPGTVMAQRENSVMST
:: .:.... . ..:. . : ...: . . :. ..:.: . ..: ..
XP_005 LEMSVQFLR-LASALGPSQEQHAILASSKEM-WHSLQEDVLQLTLSSQIQA-------GV
100 110 120 130 140
310 320 330 340 350 360
pF1KB6 YSPERGLQFLTNTCWNGCSTPDAESSLDEAVRVPSSSASENAIGDPYKTHISSAALSLNS
.: : . .: :::... :. . .::: . .
XP_005 PDPGTGAS-------SGTRTPDVKAFLESPWSLDPASASPEPVPHILASSRQWDPASCTS
150 160 170 180 190
370 380 390 400 410 420
pF1KB6 LHTVRYYSKVTPSYDATAVTNQNISIHLPSAMPPVSKLLPRHCTSGLGQTCTTHPNCLQQ
XP_005 LGTDKCEALLGLCQVRGGLPPFSEPSSLVPWPPGRSLPKAVRPPLSWPPFSQQQTLPVMS
200 210 220 230 240 250
>>XP_011517000 (OMIM: 610224) PREDICTED: spermatogenesis (409 aa)
initn: 175 init1: 142 opt: 159 Z-score: 180.3 bits: 42.3 E(85289): 0.0027
Smith-Waterman score: 166; 25.9% identity (54.4% similar) in 193 aa overlap (152-344:10-180)
130 140 150 160 170 180
pF1KB6 EPLTMEKMSNVVKYWTTCPSNTVKTENATGPEELGLPLQRSYSEHLGYFPTDLFACSESL
:: .: :. . : . : : .:
XP_011 MASRCSEPYPEVSRIPTVRGCN---GSLSGALSCCEDSA
10 20 30
190 200 210 220 230 240
pF1KB6 RNGNGLELNASLSEFEKNKKISLLHSSKEKLRRERIKYCCEQLRTLLPYVKGRKNDAASV
: :.: ...: .. . : .: ::.:.. ::.::.::: ::..: :::
XP_011 R-GSGPPKAPTVAEGPSSCLRRNVISERE--RRKRMSLSCERLRALLPQFDGRREDMASV
40 50 60 70 80 90
250 260 270 280 290 300
pF1KB6 LEATVDYVKYIREKISPAVMAQITEALQSNMRFCKKQQTPIELSLPGTVMAQRENSVMST
:: .:.... . ..:. . : ...: . . :. ..:.: . ..: ..
XP_011 LEMSVQFLR-LASALGPSQEQHAILASSKEM-WHSLQEDVLQLTLSSQIQA-------GV
100 110 120 130 140
310 320 330 340 350 360
pF1KB6 YSPERGLQFLTNTCWNGCSTPDAESSLDEAVRVPSSSASENAIGDPYKTHISSAALSLNS
.: : . .: :::... :. . .::: . .
XP_011 PDPGTGAS-------SGTRTPDVKAFLESPWSLDPASASPEPVPHILASSRQWDPASCTS
150 160 170 180 190
370 380 390 400 410 420
pF1KB6 LHTVRYYSKVTPSYDATAVTNQNISIHLPSAMPPVSKLLPRHCTSGLGQTCTTHPNCLQQ
XP_011 LGTDKCEALLGLCQVRGGLPPFSEPSSLVPWPPGRSLPKAVRPPLSWPPFSQQQTLPVMS
200 210 220 230 240 250
>>NP_001012415 (OMIM: 610224) spermatogenesis- and oogen (328 aa)
initn: 196 init1: 142 opt: 157 Z-score: 179.5 bits: 41.9 E(85289): 0.0029
Smith-Waterman score: 164; 24.9% identity (54.9% similar) in 193 aa overlap (152-344:10-180)
130 140 150 160 170 180
pF1KB6 EPLTMEKMSNVVKYWTTCPSNTVKTENATGPEELGLPLQRSYSEHLGYFPTDLFACSESL
:: .: :. . : . ..: :.
NP_001 MASRCSEPYPEVSRIPTVRGCNGSL----SGALSCCEDS
10 20 30
190 200 210 220 230 240
pF1KB6 RNGNGLELNASLSEFEKNKKISLLHSSKEKLRRERIKYCCEQLRTLLPYVKGRKNDAASV
.:.: ...: .. . : .: ::.:.. ::.::.::: ::..: :::
NP_001 AQGSGPPKAPTVAEGPSSCLRRNVISERE--RRKRMSLSCERLRALLPQFDGRREDMASV
40 50 60 70 80 90
250 260 270 280 290 300
pF1KB6 LEATVDYVKYIREKISPAVMAQITEALQSNMRFCKKQQTPIELSLPGTVMAQRENSVMST
:: .:.... . ..:. . : ...: . . :. ..:.: . ..: ..
NP_001 LEMSVQFLR-LASALGPSQEQHAILASSKEM-WHSLQEDVLQLTLSSQIQA-------GV
100 110 120 130 140
310 320 330 340 350 360
pF1KB6 YSPERGLQFLTNTCWNGCSTPDAESSLDEAVRVPSSSASENAIGDPYKTHISSAALSLNS
.: : . .: :::... :. . .::: . .
NP_001 PDPGTGAS-------SGTRTPDVKAFLESPWSLDPASASPEPVPHILASSRQWDPASCTS
150 160 170 180 190
370 380 390 400 410 420
pF1KB6 LHTVRYYSKVTPSYDATAVTNQNISIHLPSAMPPVSKLLPRHCTSGLGQTCTTHPNCLQQ
NP_001 LGTDKCEALLGLCQVRGGLPPFSEPSSLVPWPPGRSLPKAVRPPLSWPPFSQQQTLPVMS
200 210 220 230 240 250
>>NP_001095147 (OMIM: 610224) spermatogenesis- and oogen (387 aa)
initn: 175 init1: 142 opt: 157 Z-score: 178.4 bits: 41.9 E(85289): 0.0034
Smith-Waterman score: 164; 24.9% identity (54.9% similar) in 193 aa overlap (152-344:10-180)
130 140 150 160 170 180
pF1KB6 EPLTMEKMSNVVKYWTTCPSNTVKTENATGPEELGLPLQRSYSEHLGYFPTDLFACSESL
:: .: :. . : . ..: :.
NP_001 MASRCSEPYPEVSRIPTVRGCNGSL----SGALSCCEDS
10 20 30
190 200 210 220 230 240
pF1KB6 RNGNGLELNASLSEFEKNKKISLLHSSKEKLRRERIKYCCEQLRTLLPYVKGRKNDAASV
.:.: ...: .. . : .: ::.:.. ::.::.::: ::..: :::
NP_001 AQGSGPPKAPTVAEGPSSCLRRNVISERE--RRKRMSLSCERLRALLPQFDGRREDMASV
40 50 60 70 80 90
250 260 270 280 290 300
pF1KB6 LEATVDYVKYIREKISPAVMAQITEALQSNMRFCKKQQTPIELSLPGTVMAQRENSVMST
:: .:.... . ..:. . : ...: . . :. ..:.: . ..: ..
NP_001 LEMSVQFLR-LASALGPSQEQHAILASSKEM-WHSLQEDVLQLTLSSQIQA-------GV
100 110 120 130 140
310 320 330 340 350 360
pF1KB6 YSPERGLQFLTNTCWNGCSTPDAESSLDEAVRVPSSSASENAIGDPYKTHISSAALSLNS
.: : . .: :::... :. . .::: . .
NP_001 PDPGTGAS-------SGTRTPDVKAFLESPWSLDPASASPEPVPHILASSRQWDPASCTS
150 160 170 180 190
370 380 390 400 410 420
pF1KB6 LHTVRYYSKVTPSYDATAVTNQNISIHLPSAMPPVSKLLPRHCTSGLGQTCTTHPNCLQQ
NP_001 LGTDKCEALLGLCQVRGGLPPFSEPSSLVPWPPGRSLPKAVRPPLSWPPFSQQQTLPVMS
200 210 220 230 240 250
>>XP_005260242 (OMIM: 604745) PREDICTED: transcription f (499 aa)
initn: 116 init1: 88 opt: 153 Z-score: 172.4 bits: 41.2 E(85289): 0.0073
Smith-Waterman score: 153; 28.7% identity (63.4% similar) in 101 aa overlap (206-305:404-497)
180 190 200 210 220 230
pF1KB6 ACSESLRNGNGLELNASLSEFEKNKKISLLHSSKEKLRRERIKYCCEQLRTLLPYVKGRK
:. :. ::.::. ::..: :.:. .. .
XP_005 AWQSSESSQANLGEQAQSGPQGGRSQRRERHNRMERDRRRRIRICCDELNLLVPFCNA-E
380 390 400 410 420 430
240 250 260 270 280 290
pF1KB6 NDAASVLEATVDYVKYIREKISPAVMAQITEALQSNMRFCKKQQTPIELSLPGT-VMAQR
.: :..:. :. ..:::.:. . .. .. . :: : ..:. : . :
XP_005 TDKATTLQWTTAFLKYIQERHGDSLKKEFESV------FCGKTGRRLKLTRPDSLVTCPA
440 450 460 470 480
300 310 320 330 340 350
pF1KB6 ENSVMSTYSPERGLQFLTNTCWNGCSTPDAESSLDEAVRVPSSSASENAIGDPYKTHISS
..:..:. : :
XP_005 QGSLQSSPSMEIK
490
>>NP_006593 (OMIM: 604745) transcription factor-like 5 p (500 aa)
initn: 116 init1: 88 opt: 153 Z-score: 172.4 bits: 41.2 E(85289): 0.0073
Smith-Waterman score: 153; 28.7% identity (63.4% similar) in 101 aa overlap (206-305:405-498)
180 190 200 210 220 230
pF1KB6 ACSESLRNGNGLELNASLSEFEKNKKISLLHSSKEKLRRERIKYCCEQLRTLLPYVKGRK
:. :. ::.::. ::..: :.:. .. .
NP_006 AWQSSESSQANLGEQAQSGPQGGRSQRRERHNRMERDRRRRIRICCDELNLLVPFCNA-E
380 390 400 410 420 430
240 250 260 270 280 290
pF1KB6 NDAASVLEATVDYVKYIREKISPAVMAQITEALQSNMRFCKKQQTPIELSLPGT-VMAQR
.: :..:. :. ..:::.:. . .. .. . :: : ..:. : . :
NP_006 TDKATTLQWTTAFLKYIQERHGDSLKKEFESV------FCGKTGRRLKLTRPDSLVTCPA
440 450 460 470 480
300 310 320 330 340 350
pF1KB6 ENSVMSTYSPERGLQFLTNTCWNGCSTPDAESSLDEAVRVPSSSASENAIGDPYKTHISS
..:..:. : :
NP_006 QGSLQSSPSMEIK
490 500
425 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 11:19:04 2016 done: Sat Nov 5 11:19:05 2016
Total Scan time: 9.010 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]