Result of FASTA (ccds) for
pF1KB6668
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6668, 453 aa
1>>>pF1KB6668 453 - 453 aa - 453 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7285+/-0.000832; mu= 16.8388+/- 0.051
mean_var=88.2570+/-17.662, 0's: 0 Z-trim(109.6): 8 B-trim: 155 in 1/51
Lambda= 0.136521
statistics sampled from 11009 (11014) to 11009 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.338), width: 16
Scan time: 3.360
The best scores are: opt bits E(32554)
CCDS977.1 PRUNE1 gene_id:58497|Hs108|chr1 ( 453) 2949 590.7 1e-168
CCDS76211.1 PRUNE1 gene_id:58497|Hs108|chr1 ( 271) 1764 357.1 1.3e-98
CCDS78407.1 PRUNE2 gene_id:158471|Hs108|chr9 (3062) 441 97.3 2.3e-19
CCDS47982.1 PRUNE2 gene_id:158471|Hs108|chr9 (3088) 441 97.3 2.4e-19
>>CCDS977.1 PRUNE1 gene_id:58497|Hs108|chr1 (453 aa)
initn: 2949 init1: 2949 opt: 2949 Z-score: 3142.3 bits: 590.7 E(32554): 1e-168
Smith-Waterman score: 2949; 100.0% identity (100.0% similar) in 453 aa overlap (1-453:1-453)
10 20 30 40 50 60
pF1KB6 MEDYLQGCRAALQESRPLHVVLGNEACDLDSTVSALALAFYLAKTTEAEEVFVPVLNIKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 MEDYLQGCRAALQESRPLHVVLGNEACDLDSTVSALALAFYLAKTTEAEEVFVPVLNIKR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 SELPLRGDIVFFLQKVHIPESILIFRDEIDLHALYQAGQLTLILVDHHILSKSDTALEEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 SELPLRGDIVFFLQKVHIPESILIFRDEIDLHALYQAGQLTLILVDHHILSKSDTALEEA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 VAEVLDHRPIEPKHCPPCHVSVELVGSCATLVTERILQGAPEILDRQTAALLHGTIILDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 VAEVLDHRPIEPKHCPPCHVSVELVGSCATLVTERILQGAPEILDRQTAALLHGTIILDC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 VNMDLKIGKATPKDSKYVEKLEALFPDLPKRNDIFDSLQKAKFDVSGLTTEQMLRKDQKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 VNMDLKIGKATPKDSKYVEKLEALFPDLPKRNDIFDSLQKAKFDVSGLTTEQMLRKDQKT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 IYRQGVKVAISAIYMDLEAFLQRSNLLADLHAFCQAHSYDVLVAMTIFFNTHNEPVRQLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 IYRQGVKVAISAIYMDLEAFLQRSNLLADLHAFCQAHSYDVLVAMTIFFNTHNEPVRQLA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 IFCPHVALQTTICEVLERSHSPPLKLTPASSTHPNLHAYLQGNTQVSRKKLLPLLQEALS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 IFCPHVALQTTICEVLERSHSPPLKLTPASSTHPNLHAYLQGNTQVSRKKLLPLLQEALS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 AYFDSMKIPSGQPETADVSREQVDKELDRASNSLISGLSQDEEDPPLPPTPMNSLVDECP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 AYFDSMKIPSGQPETADVSREQVDKELDRASNSLISGLSQDEEDPPLPPTPMNSLVDECP
370 380 390 400 410 420
430 440 450
pF1KB6 LDQGLPKLSAEAVFEKCSQISLSQSTTASLSKK
:::::::::::::::::::::::::::::::::
CCDS97 LDQGLPKLSAEAVFEKCSQISLSQSTTASLSKK
430 440 450
>>CCDS76211.1 PRUNE1 gene_id:58497|Hs108|chr1 (271 aa)
initn: 1764 init1: 1764 opt: 1764 Z-score: 1884.1 bits: 357.1 E(32554): 1.3e-98
Smith-Waterman score: 1764; 100.0% identity (100.0% similar) in 271 aa overlap (183-453:1-271)
160 170 180 190 200 210
pF1KB6 TERILQGAPEILDRQTAALLHGTIILDCVNMDLKIGKATPKDSKYVEKLEALFPDLPKRN
::::::::::::::::::::::::::::::
CCDS76 MDLKIGKATPKDSKYVEKLEALFPDLPKRN
10 20 30
220 230 240 250 260 270
pF1KB6 DIFDSLQKAKFDVSGLTTEQMLRKDQKTIYRQGVKVAISAIYMDLEAFLQRSNLLADLHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 DIFDSLQKAKFDVSGLTTEQMLRKDQKTIYRQGVKVAISAIYMDLEAFLQRSNLLADLHA
40 50 60 70 80 90
280 290 300 310 320 330
pF1KB6 FCQAHSYDVLVAMTIFFNTHNEPVRQLAIFCPHVALQTTICEVLERSHSPPLKLTPASST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 FCQAHSYDVLVAMTIFFNTHNEPVRQLAIFCPHVALQTTICEVLERSHSPPLKLTPASST
100 110 120 130 140 150
340 350 360 370 380 390
pF1KB6 HPNLHAYLQGNTQVSRKKLLPLLQEALSAYFDSMKIPSGQPETADVSREQVDKELDRASN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 HPNLHAYLQGNTQVSRKKLLPLLQEALSAYFDSMKIPSGQPETADVSREQVDKELDRASN
160 170 180 190 200 210
400 410 420 430 440 450
pF1KB6 SLISGLSQDEEDPPLPPTPMNSLVDECPLDQGLPKLSAEAVFEKCSQISLSQSTTASLSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 SLISGLSQDEEDPPLPPTPMNSLVDECPLDQGLPKLSAEAVFEKCSQISLSQSTTASLSK
220 230 240 250 260 270
pF1KB6 K
:
CCDS76 K
>>CCDS78407.1 PRUNE2 gene_id:158471|Hs108|chr9 (3062 aa)
initn: 718 init1: 325 opt: 441 Z-score: 461.0 bits: 97.3 E(32554): 2.3e-19
Smith-Waterman score: 734; 33.3% identity (66.5% similar) in 409 aa overlap (1-406:1-397)
10 20 30 40 50
pF1KB6 MEDYLQGCRAALQESRPL---HVVLGNEACDLDSTVSALALAFYLAKTTEAEEVFVPVLN
::..:: .. :..:. : :::.: ..::::: .:... :..: :.. . .::::
CCDS78 MEEFLQRAKSKLNRSKRLEKVHVVIGPKSCDLDSLISTFTYAYFLDKVSPPGVLCLPVLN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 IKRSELPLRGDIVFFLQKVHIPESILIFRDEIDLHALYQAGQLTLILVDHHILSKSDTAL
: :.:. . :.:....: ::. ::::::.:: : . :.:.. :: .:.. : .:
CCDS78 IPRTEFNYFTETRFILEELNISESFHIFRDEINLHQLNDEGKLSITLVGSSVLASEDKTL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 EEAVAEVLDHRPIEPKHCPPCHVSVELVGSCATLVTERILQGAPEILDRQTAALLHGTII
: ::..:.. :.: . ..::. : ..:: ..::: :::.. .: : :.:.:.
CCDS78 ESAVVKVIN--PVEQSD-----ANVEFRESSSSLVLKEILQEAPELITEQLAHRLRGSIL
130 140 150 160 170
180 190 200 210 220 230
pF1KB6 LDCVNMDLKIGKATPKDSKYVEKLEALFPDLPKRNDIFDSLQKAKFDVSGLTTEQMLRKD
. ..:. . : . :. . . :: ::.:: :.::.. ::...:...::. :: . ::
CCDS78 FKWMTMESE--KISEKQEEILSILEEKFPNLPPREDIINVLQETQFSAQGLSIEQTMLKD
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB6 QKTIYRQGVKVAISAIYMDLEAFLQRSNLLADLHAFCQAHSYDVLVAMTIFFNTHNEPVR
: . .:::::.. :.:: : .::. .::.:: . ..:::. .. ... ...: :
CCDS78 LKELSDGEIKVAISTVSMNLENCLFHSNITSDLKAFTDKFGFDVLILFSSYLSEEQQPRR
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB6 QLAIFCPHVALQTTICEVLERSHSPPLKLTPASSTHPNLHAYLQGNTQVSRKKLLPLLQE
:.:.. .. : . :: ::. ..: :.: : . .. .: : . .:. ... ...:
CCDS78 QIAVYSENMELCSQICCELEECQNPCLELEPFDCGCDEILVYQQEDPSVTCDQVVLVVKE
300 310 320 330 340 350
360 370 380 390 400 410
pF1KB6 ALSAYFDSMKIPSGQPETADVSREQVDKELDRASNSLISGLSQDEEDPPLPPTPMNSLVD
... : : : :. . :...:.... ..: : :
CCDS78 VINRRCPEMVSNSRTSSTEAVAG---SAPLSQGSSGIMELYGSDIEPQPSSVNFIENPPD
360 370 380 390 400
420 430 440 450
pF1KB6 ECPLDQGLPKLSAEAVFEKCSQISLSQSTTASLSKK
CCDS78 LNDSNQAQVDANVDLVSPDSGLATIRSSRSSKESSVFLSDDSPVGEGAGPHHTLLPGLDS
410 420 430 440 450 460
>>CCDS47982.1 PRUNE2 gene_id:158471|Hs108|chr9 (3088 aa)
initn: 718 init1: 325 opt: 441 Z-score: 461.0 bits: 97.3 E(32554): 2.4e-19
Smith-Waterman score: 734; 33.3% identity (66.5% similar) in 409 aa overlap (1-406:1-397)
10 20 30 40 50
pF1KB6 MEDYLQGCRAALQESRPL---HVVLGNEACDLDSTVSALALAFYLAKTTEAEEVFVPVLN
::..:: .. :..:. : :::.: ..::::: .:... :..: :.. . .::::
CCDS47 MEEFLQRAKSKLNRSKRLEKVHVVIGPKSCDLDSLISTFTYAYFLDKVSPPGVLCLPVLN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 IKRSELPLRGDIVFFLQKVHIPESILIFRDEIDLHALYQAGQLTLILVDHHILSKSDTAL
: :.:. . :.:....: ::. ::::::.:: : . :.:.. :: .:.. : .:
CCDS47 IPRTEFNYFTETRFILEELNISESFHIFRDEINLHQLNDEGKLSITLVGSSVLASEDKTL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 EEAVAEVLDHRPIEPKHCPPCHVSVELVGSCATLVTERILQGAPEILDRQTAALLHGTII
: ::..:.. :.: . ..::. : ..:: ..::: :::.. .: : :.:.:.
CCDS47 ESAVVKVIN--PVEQSD-----ANVEFRESSSSLVLKEILQEAPELITEQLAHRLRGSIL
130 140 150 160 170
180 190 200 210 220 230
pF1KB6 LDCVNMDLKIGKATPKDSKYVEKLEALFPDLPKRNDIFDSLQKAKFDVSGLTTEQMLRKD
. ..:. . : . :. . . :: ::.:: :.::.. ::...:...::. :: . ::
CCDS47 FKWMTMESE--KISEKQEEILSILEEKFPNLPPREDIINVLQETQFSAQGLSIEQTMLKD
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB6 QKTIYRQGVKVAISAIYMDLEAFLQRSNLLADLHAFCQAHSYDVLVAMTIFFNTHNEPVR
: . .:::::.. :.:: : .::. .::.:: . ..:::. .. ... ...: :
CCDS47 LKELSDGEIKVAISTVSMNLENCLFHSNITSDLKAFTDKFGFDVLILFSSYLSEEQQPRR
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB6 QLAIFCPHVALQTTICEVLERSHSPPLKLTPASSTHPNLHAYLQGNTQVSRKKLLPLLQE
:.:.. .. : . :: ::. ..: :.: : . .. .: : . .:. ... ...:
CCDS47 QIAVYSENMELCSQICCELEECQNPCLELEPFDCGCDEILVYQQEDPSVTCDQVVLVVKE
300 310 320 330 340 350
360 370 380 390 400 410
pF1KB6 ALSAYFDSMKIPSGQPETADVSREQVDKELDRASNSLISGLSQDEEDPPLPPTPMNSLVD
... : : : :. . :...:.... ..: : :
CCDS47 VINRRCPEMVSNSRTSSTEAVAG---SAPLSQGSSGIMELYGSDIEPQPSSVNFIENPPD
360 370 380 390 400
420 430 440 450
pF1KB6 ECPLDQGLPKLSAEAVFEKCSQISLSQSTTASLSKK
CCDS47 LNDSNQAQVDANVDLVSPDSGLATIRSSRSSKESSVFLSDDSPVGEGAGPHHTLLPGLDS
410 420 430 440 450 460
453 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 11:42:13 2016 done: Sat Nov 5 11:42:14 2016
Total Scan time: 3.360 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]