Result of FASTA (ccds) for
pF1KB6647
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6647, 404 aa
1>>>pF1KB6647 404 - 404 aa - 404 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.0582+/-0.000782; mu= 5.9879+/- 0.047
mean_var=202.0396+/-40.732, 0's: 0 Z-trim(115.1): 44 B-trim: 0 in 0/53
Lambda= 0.090231
statistics sampled from 15585 (15623) to 15585 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.799), E-opt: 0.2 (0.48), width: 16
Scan time: 2.870
The best scores are: opt bits E(32554)
CCDS4746.1 AGER gene_id:177|Hs108|chr6 ( 404) 2756 370.9 1.2e-102
CCDS56418.1 AGER gene_id:177|Hs108|chr6 ( 347) 2289 310.0 2.1e-84
CCDS75429.1 AGER gene_id:177|Hs108|chr6 ( 420) 1808 247.5 1.7e-65
CCDS4747.1 AGER gene_id:177|Hs108|chr6 ( 342) 1446 200.3 2.3e-51
CCDS56417.1 AGER gene_id:177|Hs108|chr6 ( 363) 1341 186.7 3.1e-47
>>CCDS4746.1 AGER gene_id:177|Hs108|chr6 (404 aa)
initn: 2756 init1: 2756 opt: 2756 Z-score: 1956.4 bits: 370.9 E(32554): 1.2e-102
Smith-Waterman score: 2756; 100.0% identity (100.0% similar) in 404 aa overlap (1-404:1-404)
10 20 30 40 50 60
pF1KB6 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 WKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 WKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 PETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAPIQPRVWEPVPLEEVQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAPIQPRVWEPVPLEEVQL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 VVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 CVATHSSHGPQESRAVSISIIEPGEEGPTAGSVGGSGLGTLALALGILGGLGTAALLIGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 CVATHSSHGPQESRAVSISIIEPGEEGPTAGSVGGSGLGTLALALGILGGLGTAALLIGV
310 320 330 340 350 360
370 380 390 400
pF1KB6 ILWQRRQRRGEERKAPENQEEEEERAELNQSEEPEAGESSTGGP
::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ILWQRRQRRGEERKAPENQEEEEERAELNQSEEPEAGESSTGGP
370 380 390 400
>>CCDS56418.1 AGER gene_id:177|Hs108|chr6 (347 aa)
initn: 2289 init1: 2289 opt: 2289 Z-score: 1628.7 bits: 310.0 E(32554): 2.1e-84
Smith-Waterman score: 2289; 100.0% identity (100.0% similar) in 331 aa overlap (1-331:1-331)
10 20 30 40 50 60
pF1KB6 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 WKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 WKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 PGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 PETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAPIQPRVWEPVPLEEVQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 PETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAPIQPRVWEPVPLEEVQL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 VVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 VVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 CVATHSSHGPQESRAVSISIIEPGEEGPTAGSVGGSGLGTLALALGILGGLGTAALLIGV
:::::::::::::::::::::::::::::::
CCDS56 CVATHSSHGPQESRAVSISIIEPGEEGPTAGEGFDKVREAEDSPQHM
310 320 330 340
370 380 390 400
pF1KB6 ILWQRRQRRGEERKAPENQEEEEERAELNQSEEPEAGESSTGGP
>>CCDS75429.1 AGER gene_id:177|Hs108|chr6 (420 aa)
initn: 1804 init1: 1804 opt: 1808 Z-score: 1289.2 bits: 247.5 E(32554): 1.7e-65
Smith-Waterman score: 2714; 96.2% identity (96.2% similar) in 420 aa overlap (1-404:1-420)
10 20 30 40 50 60
pF1KB6 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 WKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 WKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
70 80 90 100 110 120
130 140 150 160
pF1KB6 PGKPEIVDSASELTAGVPNKV----------------GTCVSEGSYPAGTLSWHLDGKPL
::::::::::::::::::::: :::::::::::::::::::::::
CCDS75 PGKPEIVDSASELTAGVPNKVVEESRRSRKRPCEQEVGTCVSEGSYPAGTLSWHLDGKPL
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB6 VPNEKGVSVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VPNEKGVSVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAP
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB6 IQPRVWEPVPLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 IQPRVWEPVPLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSP
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB6 VLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEPGEEGPTAGSVGGSGLGTLALA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEPGEEGPTAGSVGGSGLGTLALA
310 320 330 340 350 360
350 360 370 380 390 400
pF1KB6 LGILGGLGTAALLIGVILWQRRQRRGEERKAPENQEEEEERAELNQSEEPEAGESSTGGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LGILGGLGTAALLIGVILWQRRQRRGEERKAPENQEEEEERAELNQSEEPEAGESSTGGP
370 380 390 400 410 420
>>CCDS4747.1 AGER gene_id:177|Hs108|chr6 (342 aa)
initn: 1464 init1: 1440 opt: 1446 Z-score: 1035.7 bits: 200.3 E(32554): 2.3e-51
Smith-Waterman score: 1762; 94.9% identity (94.9% similar) in 274 aa overlap (1-274:1-260)
10 20 30 40 50 60
pF1KB6 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEA
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKL-------
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 WKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 -------GGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
60 70 80 90 100
130 140 150 160 170 180
pF1KB6 PGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRH
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB6 PETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAPIQPRVWEPVPLEEVQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAPIQPRVWEPVPLEEVQL
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB6 VVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYS
::::::::::::::::::::::::::::::::::
CCDS47 VVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDVSDLERGAGRTRRGGANCRLCGRIRA
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB6 CVATHSSHGPQESRAVSISIIEPGEEGPTAGSVGGSGLGTLALALGILGGLGTAALLIGV
CCDS47 GNSSPGPGDPGRPGDSRPAHWGHLVAKAATPRRGEEGPRKPGGRGGACRTESVGGT
290 300 310 320 330 340
>>CCDS56417.1 AGER gene_id:177|Hs108|chr6 (363 aa)
initn: 1337 init1: 1337 opt: 1341 Z-score: 961.5 bits: 186.7 E(32554): 3.1e-47
Smith-Waterman score: 2247; 95.4% identity (95.4% similar) in 347 aa overlap (1-331:1-347)
10 20 30 40 50 60
pF1KB6 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 WKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 WKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
70 80 90 100 110 120
130 140 150 160
pF1KB6 PGKPEIVDSASELTAGVPNKV----------------GTCVSEGSYPAGTLSWHLDGKPL
::::::::::::::::::::: :::::::::::::::::::::::
CCDS56 PGKPEIVDSASELTAGVPNKVVEESRRSRKRPCEQEVGTCVSEGSYPAGTLSWHLDGKPL
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB6 VPNEKGVSVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 VPNEKGVSVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAP
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB6 IQPRVWEPVPLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 IQPRVWEPVPLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSP
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB6 VLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEPGEEGPTAGSVGGSGLGTLALA
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 VLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEPGEEGPTAGEGFDKVREAEDSP
310 320 330 340 350 360
350 360 370 380 390 400
pF1KB6 LGILGGLGTAALLIGVILWQRRQRRGEERKAPENQEEEEERAELNQSEEPEAGESSTGGP
CCDS56 QHM
404 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 11:14:44 2016 done: Sat Nov 5 11:14:45 2016
Total Scan time: 2.870 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]