FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6636, 441 aa
  1>>>pF1KB6636 441 - 441 aa - 441 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.6120+/-0.00147; mu= -15.4472+/- 0.086
 mean_var=469.0996+/-97.460, 0's: 0 Z-trim(109.6): 57  B-trim: 0 in 0/53
 Lambda= 0.059216
 statistics sampled from 10947 (10971) to 10947 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.67), E-opt: 0.2 (0.337), width:  16
 Scan time:  3.020

The best scores are:                                      opt bits E(32554)
CCDS8716.1 CCDC91 gene_id:55297|Hs108|chr12        ( 441) 2748 249.5   5e-66
CCDS81675.1 CCDC91 gene_id:55297|Hs108|chr12       ( 405) 1544 146.6 4.3e-35


>>CCDS8716.1 CCDC91 gene_id:55297|Hs108|chr12             (441 aa)
 initn: 2748 init1: 2748 opt: 2748  Z-score: 1298.9  bits: 249.5 E(32554): 5e-66
Smith-Waterman score: 2748; 99.8% identity (100.0% similar) in 441 aa overlap (1-441:1-441)

               10        20        30        40        50        60
pF1KB6 MDDDDFGGFEAAETFDGGSGETQTTSPAIPWAAFPAVSGVHLSPSSPEIVLDRDHSSSIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 MDDDDFGGFEAAETFDGGSGETQTTSPAIPWAAFPAVSGVHLSPSSPEIVLDRDHSSSIG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 CLSSDAIISSPENTHAANSIVSQTIPKAQIQQSTHTHLDISLFPLGLTDEKSNGTIALVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 CLSSDAIISSPENTHAANSIVSQTIPKAQIQQSTHTHLDISLFPLGLTDEKSNGTIALVD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 DSEDPGANVSNIQLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKGFLKEKEQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 DSEDPGANVSNIQLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKGFLKEKEQE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 AISFQDRYKELQEKHKQELEDMRKAGHEALSIIVDEYKALLQSSVKQQVEAIEKQYISAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 AISFQDRYKELQEKHKQELEDMRKAGHEALSIIVDEYKALLQSSVKQQVEAIEKQYISAI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 EKQAHKCEELLNAQHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 EKQAHKCEELLNAQHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 EALVSAAKLEKEAMKDAVLKVVEEERKNLEKAHAEERELWKTEHAKDQEKVSQEIQKAIQ
       :::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 EALVSAAKLEKEAVKDAVLKVVEEERKNLEKAHAEERELWKTEHAKDQEKVSQEIQKAIQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 EQRKISQETVKAAIIEEQKRSEKAVEEAVKRTRDELIEYIKEQKRLDQVIRQRSLSSLEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 EQRKISQETVKAAIIEEQKRSEKAVEEAVKRTRDELIEYIKEQKRLDQVIRQRSLSSLEL
              370       380       390       400       410       420

              430       440 
pF1KB6 FLSCAQKQLSALIATEPVDIE
       :::::::::::::::::::::
CCDS87 FLSCAQKQLSALIATEPVDIE
              430       440 

>>CCDS81675.1 CCDC91 gene_id:55297|Hs108|chr12            (405 aa)
 initn: 1607 init1: 1400 opt: 1544  Z-score: 743.5  bits: 146.6 E(32554): 4.3e-35
Smith-Waterman score: 2447; 91.6% identity (91.8% similar) in 441 aa overlap (1-441:1-405)

               10        20        30        40        50        60
pF1KB6 MDDDDFGGFEAAETFDGGSGETQTTSPAIPWAAFPAVSGVHLSPSSPEIVLDRDHSSSIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MDDDDFGGFEAAETFDGGSGETQTTSPAIPWAAFPAVSGVHLSPSSPEIVLDRDHSSSIG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 CLSSDAIISSPENTHAANSIVSQTIPKAQIQQSTHTHLDISLFPLGLTDEKSNGTIALVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 CLSSDAIISSPENTHAANSIVSQTIPKAQIQQSTHTHLDISLFPLGLTDEKSNGTIALVD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 DSEDPGANVSNIQLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKGFLKEKEQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 DSEDPGANVSNIQLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKGFLKEKEQE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 AISFQDRYKELQEKHKQELEDMRKAGHEALSIIVDEYKALLQSSVKQQVEAIEKQYISAI
       ::::::::::::::::::::::::::::::::::::::                      
CCDS81 AISFQDRYKELQEKHKQELEDMRKAGHEALSIIVDEYK----------------------
              190       200       210                              

              250       260       270       280       290       300
pF1KB6 EKQAHKCEELLNAQHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNK
                     ::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 --------------HQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNK
                    220       230       240       250       260    

              310       320       330       340       350       360
pF1KB6 EALVSAAKLEKEAMKDAVLKVVEEERKNLEKAHAEERELWKTEHAKDQEKVSQEIQKAIQ
       :::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 EALVSAAKLEKEAVKDAVLKVVEEERKNLEKAHAEERELWKTEHAKDQEKVSQEIQKAIQ
          270       280       290       300       310       320    

              370       380       390       400       410       420
pF1KB6 EQRKISQETVKAAIIEEQKRSEKAVEEAVKRTRDELIEYIKEQKRLDQVIRQRSLSSLEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 EQRKISQETVKAAIIEEQKRSEKAVEEAVKRTRDELIEYIKEQKRLDQVIRQRSLSSLEL
          330       340       350       360       370       380    

              430       440 
pF1KB6 FLSCAQKQLSALIATEPVDIE
       :::::::::::::::::::::
CCDS81 FLSCAQKQLSALIATEPVDIE
          390       400     




441 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 21:30:09 2016 done: Sat Nov  5 21:30:10 2016
 Total Scan time:  3.020 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]