FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6622, 436 aa
  1>>>pF1KB6622 436 - 436 aa - 436 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2147+/-0.00116; mu= 12.8423+/- 0.069
 mean_var=72.3090+/-14.176, 0's: 0 Z-trim(101.9): 30  B-trim: 2 in 1/49
 Lambda= 0.150827
 statistics sampled from 6719 (6725) to 6719 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.562), E-opt: 0.2 (0.207), width:  16
 Scan time:  2.190

The best scores are:                                      opt bits E(32554)
CCDS2187.1 ORC4 gene_id:5000|Hs108|chr2            ( 436) 2829 625.2 3.8e-179
CCDS54405.1 ORC4 gene_id:5000|Hs108|chr2           ( 362) 2348 520.5  1e-147
CCDS54404.1 ORC4 gene_id:5000|Hs108|chr2           ( 352) 2293 508.6  4e-144


>>CCDS2187.1 ORC4 gene_id:5000|Hs108|chr2                 (436 aa)
 initn: 2829 init1: 2829 opt: 2829  Z-score: 3329.7  bits: 625.2 E(32554): 3.8e-179
Smith-Waterman score: 2829; 99.8% identity (100.0% similar) in 436 aa overlap (1-436:1-436)

               10        20        30        40        50        60
pF1KB6 MSSRKSKSNSLIHTECLSQVQRILRERFCRQSPHSNLFGVQVQYKHLSELLKRTALHGES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 MSSRKSKSNSLIHTECLSQVQRILRERFCRQSPHSNLFGVQVQYKHLSELLKRTALHGES
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 NSVLIIGPRGSGKTMLISHALKELMEIEEVSENVLQVHLNGLLQINDKIALKEITRQLNL
       :::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::
CCDS21 NSVLIIGPRGSGKTMLINHALKELMEIEEVSENVLQVHLNGLLQINDKIALKEITRQLNL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ENVVGDKVFGSFAENLSFLLEALKKGDRTSSCPVIFILDEFDLFAHHKNQTLLYNLFDIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 ENVVGDKVFGSFAENLSFLLEALKKGDRTSSCPVIFILDEFDLFAHHKNQTLLYNLFDIS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 QSAQTPIAVIGLTCRLDILELLEKRVKSRFSHRQIHLMNSFGFPQYVKIFKEQLSLPAEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 QSAQTPIAVIGLTCRLDILELLEKRVKSRFSHRQIHLMNSFGFPQYVKIFKEQLSLPAEF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 PDKVFAEKWNENVQYLSEDRSVQEVLQKHFNISKNLRSLHMLLMLALNRVTASHPFMTAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 PDKVFAEKWNENVQYLSEDRSVQEVLQKHFNISKNLRSLHMLLMLALNRVTASHPFMTAV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 DLMEASQLCSMDSKANIVHGLSVLEICLIIAMKHLNDIYEEEPFNFQMVYNEFQKFVQRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 DLMEASQLCSMDSKANIVHGLSVLEICLIIAMKHLNDIYEEEPFNFQMVYNEFQKFVQRK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 AHSVYNFEKPVVMKAFEHLQQLELIKPMERTSGNSQREYQLMKLLLDNTQIMNALQKYPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 AHSVYNFEKPVVMKAFEHLQQLELIKPMERTSGNSQREYQLMKLLLDNTQIMNALQKYPN
              370       380       390       400       410       420

              430      
pF1KB6 CPTDVRQWATSSLSWL
       ::::::::::::::::
CCDS21 CPTDVRQWATSSLSWL
              430      

>>CCDS54405.1 ORC4 gene_id:5000|Hs108|chr2                (362 aa)
 initn: 2348 init1: 2348 opt: 2348  Z-score: 2765.4  bits: 520.5 E(32554): 1e-147
Smith-Waterman score: 2348; 99.7% identity (100.0% similar) in 362 aa overlap (75-436:1-362)

           50        60        70        80        90       100    
pF1KB6 KHLSELLKRTALHGESNSVLIIGPRGSGKTMLISHALKELMEIEEVSENVLQVHLNGLLQ
                                     :::.::::::::::::::::::::::::::
CCDS54                               MLINHALKELMEIEEVSENVLQVHLNGLLQ
                                             10        20        30

          110       120       130       140       150       160    
pF1KB6 INDKIALKEITRQLNLENVVGDKVFGSFAENLSFLLEALKKGDRTSSCPVIFILDEFDLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 INDKIALKEITRQLNLENVVGDKVFGSFAENLSFLLEALKKGDRTSSCPVIFILDEFDLF
               40        50        60        70        80        90

          170       180       190       200       210       220    
pF1KB6 AHHKNQTLLYNLFDISQSAQTPIAVIGLTCRLDILELLEKRVKSRFSHRQIHLMNSFGFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 AHHKNQTLLYNLFDISQSAQTPIAVIGLTCRLDILELLEKRVKSRFSHRQIHLMNSFGFP
              100       110       120       130       140       150

          230       240       250       260       270       280    
pF1KB6 QYVKIFKEQLSLPAEFPDKVFAEKWNENVQYLSEDRSVQEVLQKHFNISKNLRSLHMLLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QYVKIFKEQLSLPAEFPDKVFAEKWNENVQYLSEDRSVQEVLQKHFNISKNLRSLHMLLM
              160       170       180       190       200       210

          290       300       310       320       330       340    
pF1KB6 LALNRVTASHPFMTAVDLMEASQLCSMDSKANIVHGLSVLEICLIIAMKHLNDIYEEEPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LALNRVTASHPFMTAVDLMEASQLCSMDSKANIVHGLSVLEICLIIAMKHLNDIYEEEPF
              220       230       240       250       260       270

          350       360       370       380       390       400    
pF1KB6 NFQMVYNEFQKFVQRKAHSVYNFEKPVVMKAFEHLQQLELIKPMERTSGNSQREYQLMKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 NFQMVYNEFQKFVQRKAHSVYNFEKPVVMKAFEHLQQLELIKPMERTSGNSQREYQLMKL
              280       290       300       310       320       330

          410       420       430      
pF1KB6 LLDNTQIMNALQKYPNCPTDVRQWATSSLSWL
       ::::::::::::::::::::::::::::::::
CCDS54 LLDNTQIMNALQKYPNCPTDVRQWATSSLSWL
              340       350       360  

>>CCDS54404.1 ORC4 gene_id:5000|Hs108|chr2                (352 aa)
 initn: 2293 init1: 2293 opt: 2293  Z-score: 2700.9  bits: 508.6 E(32554): 4e-144
Smith-Waterman score: 2293; 100.0% identity (100.0% similar) in 352 aa overlap (85-436:1-352)

           60        70        80        90       100       110    
pF1KB6 ALHGESNSVLIIGPRGSGKTMLISHALKELMEIEEVSENVLQVHLNGLLQINDKIALKEI
                                     ::::::::::::::::::::::::::::::
CCDS54                               MEIEEVSENVLQVHLNGLLQINDKIALKEI
                                             10        20        30

          120       130       140       150       160       170    
pF1KB6 TRQLNLENVVGDKVFGSFAENLSFLLEALKKGDRTSSCPVIFILDEFDLFAHHKNQTLLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TRQLNLENVVGDKVFGSFAENLSFLLEALKKGDRTSSCPVIFILDEFDLFAHHKNQTLLY
               40        50        60        70        80        90

          180       190       200       210       220       230    
pF1KB6 NLFDISQSAQTPIAVIGLTCRLDILELLEKRVKSRFSHRQIHLMNSFGFPQYVKIFKEQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 NLFDISQSAQTPIAVIGLTCRLDILELLEKRVKSRFSHRQIHLMNSFGFPQYVKIFKEQL
              100       110       120       130       140       150

          240       250       260       270       280       290    
pF1KB6 SLPAEFPDKVFAEKWNENVQYLSEDRSVQEVLQKHFNISKNLRSLHMLLMLALNRVTASH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SLPAEFPDKVFAEKWNENVQYLSEDRSVQEVLQKHFNISKNLRSLHMLLMLALNRVTASH
              160       170       180       190       200       210

          300       310       320       330       340       350    
pF1KB6 PFMTAVDLMEASQLCSMDSKANIVHGLSVLEICLIIAMKHLNDIYEEEPFNFQMVYNEFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PFMTAVDLMEASQLCSMDSKANIVHGLSVLEICLIIAMKHLNDIYEEEPFNFQMVYNEFQ
              220       230       240       250       260       270

          360       370       380       390       400       410    
pF1KB6 KFVQRKAHSVYNFEKPVVMKAFEHLQQLELIKPMERTSGNSQREYQLMKLLLDNTQIMNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KFVQRKAHSVYNFEKPVVMKAFEHLQQLELIKPMERTSGNSQREYQLMKLLLDNTQIMNA
              280       290       300       310       320       330

          420       430      
pF1KB6 LQKYPNCPTDVRQWATSSLSWL
       ::::::::::::::::::::::
CCDS54 LQKYPNCPTDVRQWATSSLSWL
              340       350  




436 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:47:36 2016 done: Sat Nov  5 18:47:36 2016
 Total Scan time:  2.190 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]