FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6620, 435 aa
  1>>>pF1KB6620 435 - 435 aa - 435 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.3310+/-0.000846; mu= 6.7919+/- 0.051
 mean_var=254.8625+/-51.198, 0's: 0 Z-trim(116.5): 41  B-trim: 179 in 2/53
 Lambda= 0.080338
 statistics sampled from 17127 (17167) to 17127 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.824), E-opt: 0.2 (0.527), width:  16
 Scan time:  3.550

The best scores are:                                      opt bits E(32554)
CCDS8544.1 LTBR gene_id:4055|Hs108|chr12           ( 435) 3169 379.9 2.6e-105
CCDS59233.1 LTBR gene_id:4055|Hs108|chr12          ( 416) 2956 355.2 6.9e-98


>>CCDS8544.1 LTBR gene_id:4055|Hs108|chr12                (435 aa)
 initn: 3169 init1: 3169 opt: 3169  Z-score: 2004.1  bits: 379.9 E(32554): 2.6e-105
Smith-Waterman score: 3169; 100.0% identity (100.0% similar) in 435 aa overlap (1-435:1-435)

               10        20        30        40        50        60
pF1KB6 MLLPWATSAPGLAWGPLVLGLFGLLAASQPQAVPPYASENQTCRDQEKEYYEPQHRICCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 MLLPWATSAPGLAWGPLVLGLFGLLAASQPQAVPPYASENQTCRDQEKEYYEPQHRICCS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 RCPPGTYVSAKCSRIRDTVCATCAENSYNEHWNYLTICQLCRPCDPVMGLEEIAPCTSKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 RCPPGTYVSAKCSRIRDTVCATCAENSYNEHWNYLTICQLCRPCDPVMGLEEIAPCTSKR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KTQCRCQPGMFCAAWALECTHCELLSDCPPGTEAELKDEVGKGNNHCVPCKAGHFQNTSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 KTQCRCQPGMFCAAWALECTHCELLSDCPPGTEAELKDEVGKGNNHCVPCKAGHFQNTSS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 PSARCQPHTRCENQGLVEAAPGTAQSDTTCKNPLEPLPPEMSGTMLMLAVLLPLAFFLLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 PSARCQPHTRCENQGLVEAAPGTAQSDTTCKNPLEPLPPEMSGTMLMLAVLLPLAFFLLL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 ATVFSCIWKSHPSLCRKLGSLLKRRPQGEGPNPVAGSWEPPKAHPYFPDLVQPLLPISGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 ATVFSCIWKSHPSLCRKLGSLLKRRPQGEGPNPVAGSWEPPKAHPYFPDLVQPLLPISGD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 VSPVSTGLPAAPVLEAGVPQQQSPLDLTREPQLEPGEQSQVAHGTNGIHVTGGSMTITGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 VSPVSTGLPAAPVLEAGVPQQQSPLDLTREPQLEPGEQSQVAHGTNGIHVTGGSMTITGN
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 IYIYNGPVLGGPPGPGDLPATPEPPYPIPEEGDPGPPGLSTPHQEDGKAWHLAETEHCGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 IYIYNGPVLGGPPGPGDLPATPEPPYPIPEEGDPGPPGLSTPHQEDGKAWHLAETEHCGA
              370       380       390       400       410       420

              430     
pF1KB6 TPSNRGPRNQFITHD
       :::::::::::::::
CCDS85 TPSNRGPRNQFITHD
              430     

>>CCDS59233.1 LTBR gene_id:4055|Hs108|chr12               (416 aa)
 initn: 2948 init1: 2948 opt: 2956  Z-score: 1870.9  bits: 355.2 E(32554): 6.9e-98
Smith-Waterman score: 2956; 98.5% identity (99.0% similar) in 413 aa overlap (23-435:5-416)

               10        20        30        40        50        60
pF1KB6 MLLPWATSAPGLAWGPLVLGLFGLLAASQPQAVPPYASENQTCRDQEKEYYEPQHRICCS
                             :.  ::: . ::::::::::::::::::::::::::::
CCDS59                   MEATGISLASQLK-VPPYASENQTCRDQEKEYYEPQHRICCS
                                 10         20        30        40 

               70        80        90       100       110       120
pF1KB6 RCPPGTYVSAKCSRIRDTVCATCAENSYNEHWNYLTICQLCRPCDPVMGLEEIAPCTSKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 RCPPGTYVSAKCSRIRDTVCATCAENSYNEHWNYLTICQLCRPCDPVMGLEEIAPCTSKR
              50        60        70        80        90       100 

              130       140       150       160       170       180
pF1KB6 KTQCRCQPGMFCAAWALECTHCELLSDCPPGTEAELKDEVGKGNNHCVPCKAGHFQNTSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 KTQCRCQPGMFCAAWALECTHCELLSDCPPGTEAELKDEVGKGNNHCVPCKAGHFQNTSS
             110       120       130       140       150       160 

              190       200       210       220       230       240
pF1KB6 PSARCQPHTRCENQGLVEAAPGTAQSDTTCKNPLEPLPPEMSGTMLMLAVLLPLAFFLLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 PSARCQPHTRCENQGLVEAAPGTAQSDTTCKNPLEPLPPEMSGTMLMLAVLLPLAFFLLL
             170       180       190       200       210       220 

              250       260       270       280       290       300
pF1KB6 ATVFSCIWKSHPSLCRKLGSLLKRRPQGEGPNPVAGSWEPPKAHPYFPDLVQPLLPISGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ATVFSCIWKSHPSLCRKLGSLLKRRPQGEGPNPVAGSWEPPKAHPYFPDLVQPLLPISGD
             230       240       250       260       270       280 

              310       320       330       340       350       360
pF1KB6 VSPVSTGLPAAPVLEAGVPQQQSPLDLTREPQLEPGEQSQVAHGTNGIHVTGGSMTITGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 VSPVSTGLPAAPVLEAGVPQQQSPLDLTREPQLEPGEQSQVAHGTNGIHVTGGSMTITGN
             290       300       310       320       330       340 

              370       380       390       400       410       420
pF1KB6 IYIYNGPVLGGPPGPGDLPATPEPPYPIPEEGDPGPPGLSTPHQEDGKAWHLAETEHCGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 IYIYNGPVLGGPPGPGDLPATPEPPYPIPEEGDPGPPGLSTPHQEDGKAWHLAETEHCGA
             350       360       370       380       390       400 

              430     
pF1KB6 TPSNRGPRNQFITHD
       :::::::::::::::
CCDS59 TPSNRGPRNQFITHD
             410      




435 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:08:45 2016 done: Sat Nov  5 11:08:45 2016
 Total Scan time:  3.550 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]