Result of FASTA (omim) for
pF1KB6619
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6619, 412 aa
1>>>pF1KB6619 412 - 412 aa - 412 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4405+/-0.000407; mu= 16.9664+/- 0.025
mean_var=73.1285+/-14.778, 0's: 0 Z-trim(111.2): 35 B-trim: 0 in 0/53
Lambda= 0.149979
statistics sampled from 19766 (19777) to 19766 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.596), E-opt: 0.2 (0.232), width: 16
Scan time: 7.240
The best scores are: opt bits E(85289)
NP_446464 (OMIM: 215700,603470) argininosuccinate ( 412) 2735 601.3 1.4e-171
NP_000041 (OMIM: 215700,603470) argininosuccinate ( 412) 2735 601.3 1.4e-171
XP_005272257 (OMIM: 215700,603470) PREDICTED: argi ( 412) 2735 601.3 1.4e-171
XP_016870218 (OMIM: 215700,603470) PREDICTED: argi ( 444) 2735 601.4 1.5e-171
XP_011517007 (OMIM: 215700,603470) PREDICTED: argi ( 450) 2735 601.4 1.5e-171
>>NP_446464 (OMIM: 215700,603470) argininosuccinate synt (412 aa)
initn: 2735 init1: 2735 opt: 2735 Z-score: 3201.5 bits: 601.3 E(85289): 1.4e-171
Smith-Waterman score: 2735; 100.0% identity (100.0% similar) in 412 aa overlap (1-412:1-412)
10 20 30 40 50 60
pF1KB6 MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARKKALKLGAKKVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_446 MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARKKALKLGAKKVF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 IEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_446 IEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 KGNDQVRFELSCYSLAPQIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_446 KGNDQVRFELSCYSLAPQIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNTPDILEIEFKKGVPVKVTNVKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_446 MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNTPDILEIEFKKGVPVKVTNVKD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 GTTHQTSLELFMYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_446 GTTHQTSLELFMYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 TMDREVRKIKQGLGLKFAELVYTGFWHSPECEFVRHCIAKSQERVEGKVQVSVLKGQVYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_446 TMDREVRKIKQGLGLKFAELVYTGFWHSPECEFVRHCIAKSQERVEGKVQVSVLKGQVYI
310 320 330 340 350 360
370 380 390 400 410
pF1KB6 LGRESPLSLYNEELVSMNVQGDYEPTDATGFININSLRLKEYHRLQSKVTAK
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_446 LGRESPLSLYNEELVSMNVQGDYEPTDATGFININSLRLKEYHRLQSKVTAK
370 380 390 400 410
>>NP_000041 (OMIM: 215700,603470) argininosuccinate synt (412 aa)
initn: 2735 init1: 2735 opt: 2735 Z-score: 3201.5 bits: 601.3 E(85289): 1.4e-171
Smith-Waterman score: 2735; 100.0% identity (100.0% similar) in 412 aa overlap (1-412:1-412)
10 20 30 40 50 60
pF1KB6 MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARKKALKLGAKKVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARKKALKLGAKKVF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 IEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 IEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 KGNDQVRFELSCYSLAPQIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 KGNDQVRFELSCYSLAPQIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNTPDILEIEFKKGVPVKVTNVKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNTPDILEIEFKKGVPVKVTNVKD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 GTTHQTSLELFMYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GTTHQTSLELFMYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 TMDREVRKIKQGLGLKFAELVYTGFWHSPECEFVRHCIAKSQERVEGKVQVSVLKGQVYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 TMDREVRKIKQGLGLKFAELVYTGFWHSPECEFVRHCIAKSQERVEGKVQVSVLKGQVYI
310 320 330 340 350 360
370 380 390 400 410
pF1KB6 LGRESPLSLYNEELVSMNVQGDYEPTDATGFININSLRLKEYHRLQSKVTAK
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LGRESPLSLYNEELVSMNVQGDYEPTDATGFININSLRLKEYHRLQSKVTAK
370 380 390 400 410
>>XP_005272257 (OMIM: 215700,603470) PREDICTED: arginino (412 aa)
initn: 2735 init1: 2735 opt: 2735 Z-score: 3201.5 bits: 601.3 E(85289): 1.4e-171
Smith-Waterman score: 2735; 100.0% identity (100.0% similar) in 412 aa overlap (1-412:1-412)
10 20 30 40 50 60
pF1KB6 MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARKKALKLGAKKVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARKKALKLGAKKVF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 IEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 KGNDQVRFELSCYSLAPQIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KGNDQVRFELSCYSLAPQIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNTPDILEIEFKKGVPVKVTNVKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNTPDILEIEFKKGVPVKVTNVKD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 GTTHQTSLELFMYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GTTHQTSLELFMYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 TMDREVRKIKQGLGLKFAELVYTGFWHSPECEFVRHCIAKSQERVEGKVQVSVLKGQVYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TMDREVRKIKQGLGLKFAELVYTGFWHSPECEFVRHCIAKSQERVEGKVQVSVLKGQVYI
310 320 330 340 350 360
370 380 390 400 410
pF1KB6 LGRESPLSLYNEELVSMNVQGDYEPTDATGFININSLRLKEYHRLQSKVTAK
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LGRESPLSLYNEELVSMNVQGDYEPTDATGFININSLRLKEYHRLQSKVTAK
370 380 390 400 410
>>XP_016870218 (OMIM: 215700,603470) PREDICTED: arginino (444 aa)
initn: 2735 init1: 2735 opt: 2735 Z-score: 3201.0 bits: 601.4 E(85289): 1.5e-171
Smith-Waterman score: 2735; 100.0% identity (100.0% similar) in 412 aa overlap (1-412:33-444)
10 20 30
pF1KB6 MSSKGSVVLAYSGGLDTSCILVWLKEQGYD
::::::::::::::::::::::::::::::
XP_016 KRLAPDSRVVHCTVKTDSRRRELTPPIPDAMSSKGSVVLAYSGGLDTSCILVWLKEQGYD
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB6 VIAYLANIGQKEDFEEARKKALKLGAKKVFIEDVSREFVEEFIWPAIQSSALYEDRYLLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VIAYLANIGQKEDFEEARKKALKLGAKKVFIEDVSREFVEEFIWPAIQSSALYEDRYLLG
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB6 TSLARPCIARKQVEIAQREGAKYVSHGATGKGNDQVRFELSCYSLAPQIKVIAPWRMPEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TSLARPCIARKQVEIAQREGAKYVSHGATGKGNDQVRFELSCYSLAPQIKVIAPWRMPEF
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB6 YNRFKGRNDLMEYAKQHGIPIPVTPKNPWSMDENLMHISYEAGILENPKNQAPPGLYTKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YNRFKGRNDLMEYAKQHGIPIPVTPKNPWSMDENLMHISYEAGILENPKNQAPPGLYTKT
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB6 QDPAKAPNTPDILEIEFKKGVPVKVTNVKDGTTHQTSLELFMYLNEVAGKHGVGRIDIVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QDPAKAPNTPDILEIEFKKGVPVKVTNVKDGTTHQTSLELFMYLNEVAGKHGVGRIDIVE
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB6 NRFIGMKSRGIYETPAGTILYHAHLDIEAFTMDREVRKIKQGLGLKFAELVYTGFWHSPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NRFIGMKSRGIYETPAGTILYHAHLDIEAFTMDREVRKIKQGLGLKFAELVYTGFWHSPE
310 320 330 340 350 360
340 350 360 370 380 390
pF1KB6 CEFVRHCIAKSQERVEGKVQVSVLKGQVYILGRESPLSLYNEELVSMNVQGDYEPTDATG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CEFVRHCIAKSQERVEGKVQVSVLKGQVYILGRESPLSLYNEELVSMNVQGDYEPTDATG
370 380 390 400 410 420
400 410
pF1KB6 FININSLRLKEYHRLQSKVTAK
::::::::::::::::::::::
XP_016 FININSLRLKEYHRLQSKVTAK
430 440
>>XP_011517007 (OMIM: 215700,603470) PREDICTED: arginino (450 aa)
initn: 2735 init1: 2735 opt: 2735 Z-score: 3201.0 bits: 601.4 E(85289): 1.5e-171
Smith-Waterman score: 2735; 100.0% identity (100.0% similar) in 412 aa overlap (1-412:39-450)
10 20 30
pF1KB6 MSSKGSVVLAYSGGLDTSCILVWLKEQGYD
::::::::::::::::::::::::::::::
XP_011 GTPALFLRVVHCTVKTDSRRRELTPPIPDAMSSKGSVVLAYSGGLDTSCILVWLKEQGYD
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB6 VIAYLANIGQKEDFEEARKKALKLGAKKVFIEDVSREFVEEFIWPAIQSSALYEDRYLLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VIAYLANIGQKEDFEEARKKALKLGAKKVFIEDVSREFVEEFIWPAIQSSALYEDRYLLG
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB6 TSLARPCIARKQVEIAQREGAKYVSHGATGKGNDQVRFELSCYSLAPQIKVIAPWRMPEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TSLARPCIARKQVEIAQREGAKYVSHGATGKGNDQVRFELSCYSLAPQIKVIAPWRMPEF
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB6 YNRFKGRNDLMEYAKQHGIPIPVTPKNPWSMDENLMHISYEAGILENPKNQAPPGLYTKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YNRFKGRNDLMEYAKQHGIPIPVTPKNPWSMDENLMHISYEAGILENPKNQAPPGLYTKT
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB6 QDPAKAPNTPDILEIEFKKGVPVKVTNVKDGTTHQTSLELFMYLNEVAGKHGVGRIDIVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QDPAKAPNTPDILEIEFKKGVPVKVTNVKDGTTHQTSLELFMYLNEVAGKHGVGRIDIVE
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB6 NRFIGMKSRGIYETPAGTILYHAHLDIEAFTMDREVRKIKQGLGLKFAELVYTGFWHSPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NRFIGMKSRGIYETPAGTILYHAHLDIEAFTMDREVRKIKQGLGLKFAELVYTGFWHSPE
310 320 330 340 350 360
340 350 360 370 380 390
pF1KB6 CEFVRHCIAKSQERVEGKVQVSVLKGQVYILGRESPLSLYNEELVSMNVQGDYEPTDATG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CEFVRHCIAKSQERVEGKVQVSVLKGQVYILGRESPLSLYNEELVSMNVQGDYEPTDATG
370 380 390 400 410 420
400 410
pF1KB6 FININSLRLKEYHRLQSKVTAK
::::::::::::::::::::::
XP_011 FININSLRLKEYHRLQSKVTAK
430 440 450
412 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 11:08:14 2016 done: Sat Nov 5 11:08:15 2016
Total Scan time: 7.240 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]