FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6619, 412 aa
  1>>>pF1KB6619 412 - 412 aa - 412 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9494+/-0.00098; mu= 13.8229+/- 0.059
 mean_var=69.6210+/-13.791, 0's: 0 Z-trim(104.6): 26  B-trim: 0 in 0/49
 Lambda= 0.153711
 statistics sampled from 7974 (7977) to 7974 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.61), E-opt: 0.2 (0.245), width:  16
 Scan time:  2.440

The best scores are:                                      opt bits E(32554)
CCDS6933.1 ASS1 gene_id:445|Hs108|chr9             ( 412) 2735 615.7 2.4e-176


>>CCDS6933.1 ASS1 gene_id:445|Hs108|chr9                  (412 aa)
 initn: 2735 init1: 2735 opt: 2735  Z-score: 3279.3  bits: 615.7 E(32554): 2.4e-176
Smith-Waterman score: 2735; 100.0% identity (100.0% similar) in 412 aa overlap (1-412:1-412)

               10        20        30        40        50        60
pF1KB6 MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARKKALKLGAKKVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARKKALKLGAKKVF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 IEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 IEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KGNDQVRFELSCYSLAPQIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 KGNDQVRFELSCYSLAPQIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNTPDILEIEFKKGVPVKVTNVKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNTPDILEIEFKKGVPVKVTNVKD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 GTTHQTSLELFMYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 GTTHQTSLELFMYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 TMDREVRKIKQGLGLKFAELVYTGFWHSPECEFVRHCIAKSQERVEGKVQVSVLKGQVYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 TMDREVRKIKQGLGLKFAELVYTGFWHSPECEFVRHCIAKSQERVEGKVQVSVLKGQVYI
              310       320       330       340       350       360

              370       380       390       400       410  
pF1KB6 LGRESPLSLYNEELVSMNVQGDYEPTDATGFININSLRLKEYHRLQSKVTAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 LGRESPLSLYNEELVSMNVQGDYEPTDATGFININSLRLKEYHRLQSKVTAK
              370       380       390       400       410  




412 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:08:13 2016 done: Sat Nov  5 11:08:13 2016
 Total Scan time:  2.440 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]