FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6607, 409 aa
  1>>>pF1KB6607 409 - 409 aa - 409 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.4005+/-0.000968; mu= -3.6969+/- 0.058
 mean_var=282.4271+/-56.997, 0's: 0 Z-trim(113.8): 17  B-trim: 13 in 1/52
 Lambda= 0.076317
 statistics sampled from 14409 (14423) to 14409 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.737), E-opt: 0.2 (0.443), width:  16
 Scan time:  2.800

The best scores are:                                      opt bits E(32554)
CCDS6769.1 RAD23B gene_id:5887|Hs108|chr9          ( 409) 2597 298.8 6.1e-81
CCDS59138.1 RAD23B gene_id:5887|Hs108|chr9         ( 337) 2150 249.5 3.4e-66


>>CCDS6769.1 RAD23B gene_id:5887|Hs108|chr9               (409 aa)
 initn: 2597 init1: 2597 opt: 2597  Z-score: 1566.7  bits: 298.8 E(32554): 6.1e-81
Smith-Waterman score: 2597; 100.0% identity (100.0% similar) in 409 aa overlap (1-409:1-409)

               10        20        30        40        50        60
pF1KB6 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 TSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 TSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 PPQAASTGAPQSSAVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 PPQAASTGAPQSSAVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 ALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 ALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYI
              310       320       330       340       350       360

              370       380       390       400         
pF1KB6 QVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQNFDED
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 QVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQNFDED
              370       380       390       400         

>>CCDS59138.1 RAD23B gene_id:5887|Hs108|chr9              (337 aa)
 initn: 2150 init1: 2150 opt: 2150  Z-score: 1301.9  bits: 249.5 E(32554): 3.4e-66
Smith-Waterman score: 2150; 100.0% identity (100.0% similar) in 337 aa overlap (73-409:1-337)

             50        60        70        80        90       100  
pF1KB6 GQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSS
                                     ::::::::::::::::::::::::::::::
CCDS59                               MVTKPKAVSTPAPATTQQSAPASTTAVTSS
                                             10        20        30

            110       120       130       140       150       160  
pF1KB6 TTTTVAQAPTPVPALAPTSTPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 TTTTVAQAPTPVPALAPTSTPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPT
               40        50        60        70        80        90

            170       180       190       200       210       220  
pF1KB6 ATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAV
              100       110       120       130       140       150

            230       240       250       260       270       280  
pF1KB6 EYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSGGHPLEFLRNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 EYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSGGHPLEFLRNQ
              160       170       180       190       200       210

            290       300       310       320       330       340  
pF1KB6 PQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 PQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGG
              220       230       240       250       260       270

            350       360       370       380       390       400  
pF1KB6 GGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 GGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL
              280       290       300       310       320       330

              
pF1KB6 QQNFDED
       :::::::
CCDS59 QQNFDED
              




409 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:04:26 2016 done: Sat Nov  5 11:04:27 2016
 Total Scan time:  2.800 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]