Result of FASTA (omim) for
pF1KB6603
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6603, 408 aa
1>>>pF1KB6603 408 - 408 aa - 408 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.4247+/-0.000416; mu= 8.3080+/- 0.026
mean_var=142.2833+/-28.551, 0's: 0 Z-trim(115.7): 32 B-trim: 413 in 3/52
Lambda= 0.107522
statistics sampled from 26239 (26271) to 26239 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.655), E-opt: 0.2 (0.308), width: 16
Scan time: 7.360
The best scores are: opt bits E(85289)
NP_003133 (OMIM: 109090) lupus La protein [Homo sa ( 408) 2674 426.5 6e-119
NP_001281074 (OMIM: 109090) lupus La protein [Homo ( 408) 2674 426.5 6e-119
NP_057732 (OMIM: 612026,615071) la-related protein ( 582) 290 56.8 1.7e-07
NP_056269 (OMIM: 612026,615071) la-related protein ( 582) 290 56.8 1.7e-07
NP_001253968 (OMIM: 612026,615071) la-related prot ( 589) 290 56.8 1.7e-07
XP_016864773 (OMIM: 612059) PREDICTED: la-related ( 824) 217 45.5 0.00056
XP_016864772 (OMIM: 612059) PREDICTED: la-related ( 858) 217 45.5 0.00058
XP_011535920 (OMIM: 612059) PREDICTED: la-related ( 891) 217 45.6 0.0006
XP_005268465 (OMIM: 612059) PREDICTED: la-related ( 891) 217 45.6 0.0006
XP_005268464 (OMIM: 612059) PREDICTED: la-related ( 891) 217 45.6 0.0006
XP_006714839 (OMIM: 612059) PREDICTED: la-related ( 891) 217 45.6 0.0006
XP_006714838 (OMIM: 612059) PREDICTED: la-related ( 955) 217 45.6 0.00063
XP_011535919 (OMIM: 612059) PREDICTED: la-related ( 961) 217 45.6 0.00064
XP_011535918 (OMIM: 612059) PREDICTED: la-related ( 988) 217 45.6 0.00065
NP_056130 (OMIM: 612059) la-related protein 1 [Hom (1019) 217 45.6 0.00067
XP_011535917 (OMIM: 612059) PREDICTED: la-related (1029) 217 45.6 0.00067
XP_005268463 (OMIM: 612059) PREDICTED: la-related (1063) 217 45.6 0.00069
XP_011535916 (OMIM: 612059) PREDICTED: la-related (1070) 217 45.6 0.0007
XP_005268461 (OMIM: 612059) PREDICTED: la-related (1096) 217 45.6 0.00071
>>NP_003133 (OMIM: 109090) lupus La protein [Homo sapien (408 aa)
initn: 2674 init1: 2674 opt: 2674 Z-score: 2256.5 bits: 426.5 E(85289): 6e-119
Smith-Waterman score: 2674; 100.0% identity (100.0% similar) in 408 aa overlap (1-408:1-408)
10 20 30 40 50 60
pF1KB6 MAENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MAENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LTTDFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LTTDFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 LILFKDDYFAKKNEERKQNKVEAKLRAKQEQEAKQKLEEDAEMKSLEEKIGCLLKFSGDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LILFKDDYFAKKNEERKQNKVEAKLRAKQEQEAKQKLEEDAEMKSLEEKIGCLLKFSGDL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 DDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 DDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 VTWEVLEGEVEKEALKKIIEDQQESLNKWKSKGRRFKGKGKGNKAAQPGSGKGKVQFQGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VTWEVLEGEVEKEALKKIIEDQQESLNKWKSKGRRFKGKGKGNKAAQPGSGKGKVQFQGK
310 320 330 340 350 360
370 380 390 400
pF1KB6 KTKFASDDEHDEHDENGATGPVKRAREETDKEEPASKQQKTENGAGDQ
::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KTKFASDDEHDEHDENGATGPVKRAREETDKEEPASKQQKTENGAGDQ
370 380 390 400
>>NP_001281074 (OMIM: 109090) lupus La protein [Homo sap (408 aa)
initn: 2674 init1: 2674 opt: 2674 Z-score: 2256.5 bits: 426.5 E(85289): 6e-119
Smith-Waterman score: 2674; 100.0% identity (100.0% similar) in 408 aa overlap (1-408:1-408)
10 20 30 40 50 60
pF1KB6 MAENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LTTDFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LTTDFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 LILFKDDYFAKKNEERKQNKVEAKLRAKQEQEAKQKLEEDAEMKSLEEKIGCLLKFSGDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LILFKDDYFAKKNEERKQNKVEAKLRAKQEQEAKQKLEEDAEMKSLEEKIGCLLKFSGDL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 DDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 VTWEVLEGEVEKEALKKIIEDQQESLNKWKSKGRRFKGKGKGNKAAQPGSGKGKVQFQGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTWEVLEGEVEKEALKKIIEDQQESLNKWKSKGRRFKGKGKGNKAAQPGSGKGKVQFQGK
310 320 330 340 350 360
370 380 390 400
pF1KB6 KTKFASDDEHDEHDENGATGPVKRAREETDKEEPASKQQKTENGAGDQ
::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KTKFASDDEHDEHDENGATGPVKRAREETDKEEPASKQQKTENGAGDQ
370 380 390 400
>>NP_057732 (OMIM: 612026,615071) la-related protein 7 i (582 aa)
initn: 223 init1: 107 opt: 290 Z-score: 255.7 bits: 56.8 E(85289): 1.7e-07
Smith-Waterman score: 292; 24.8% identity (56.7% similar) in 427 aa overlap (3-405:24-433)
10 20 30
pF1KB6 MAENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQ
:. .. . : : .:....::: :: .:.::.::
NP_057 METESGNQEKVMEEESTEKKKEVEKKKRSRVKQVLADIAKQVDFWFGDANLHKDRFLREQ
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB6 I-KLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLP
: : .:.: . ....::....:::: ..:..:: .:.: ..:.. . :.:::. :::
NP_057 IEKSRDGYVDISLLVSFNKMKKLTTDGKLIARAL-RSSA-VVELDLEGTRIRRK--KPL-
70 80 90 100 110
100 110 120 130 140 150
pF1KB6 EVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKA-FKGSIFVV
: .: .:.::.. .: ... . :.. . :.:. :.. . . :: ::
NP_057 ---GERPKDEDERTVYVELLPKNVNHSWIERVFGKCGNVVYISIPHYKSTGDPKGFAFVE
120 130 140 150 160 170
160 170 180 190 200
pF1KB6 FDSIESAKKFVETPGQKYKETDLLILFKDDYFAK--KNE--------ERKQNKVEAKLRA
:.. :.: : .: .. .:. : : : ::. :.:..: . : :
NP_057 FETKEQAAKAIEFLNNPPEEAP----RKPGIFPKTVKNKPIPALRVVEEKKKKKKKKGRM
180 190 200 210 220
210 220 230 240 250
pF1KB6 KQEQEAKQKLEE-DAEMKSLEE-KIGCLLKFSGDLDD----QTC----REDLHILFSNHG
:.:.. . : :. :. :. . : . . ..:... . : .. .. :.
NP_057 KKEDNIQAKEENMDTSNTSISKMKRSRPTSEGSDIESTEPQKQCSKKKKKRDRVEASSLP
230 240 250 260 270 280
260 270 280 290 300 310
pF1KB6 EIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEGEVEKEALKK
:.. :...: . .. :.: . .. . .:.. : . :. : :
NP_057 EVRTGKRKRSSSEDAESLAPRS-----KVKKIIQKDIIKEASEASKENRDIEISTEEEKD
290 300 310 320 330 340
320 330 340 350 360 370
pF1KB6 IIEDQQESLNKWKSKGRR-FKGKGKGNKAAQPGSGKGKVQFQGKKTKFASDDEHDEHDEN
. .. :: : : : .. : . : .. . : .: ... : .. . .. . . .
NP_057 TGDLKDSSLLKTKRKHKKKHKERHKMGEEVIPLRVLSKSEWMDLKKEYLALQKASMASLK
350 360 370 380 390 400
380 390 400
pF1KB6 GATGPVKRARE-ETDKEEPASKQQKTENGAGDQ
. . .: : :::. : . .:.:. :
NP_057 KTISQIKSESEMETDSGVPQNTGMKNEKTANREECRTQEKVNATGPQFVSGVIVKIISTE
410 420 430 440 450 460
>>NP_056269 (OMIM: 612026,615071) la-related protein 7 i (582 aa)
initn: 223 init1: 107 opt: 290 Z-score: 255.7 bits: 56.8 E(85289): 1.7e-07
Smith-Waterman score: 292; 24.8% identity (56.7% similar) in 427 aa overlap (3-405:24-433)
10 20 30
pF1KB6 MAENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQ
:. .. . : : .:....::: :: .:.::.::
NP_056 METESGNQEKVMEEESTEKKKEVEKKKRSRVKQVLADIAKQVDFWFGDANLHKDRFLREQ
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB6 I-KLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLP
: : .:.: . ....::....:::: ..:..:: .:.: ..:.. . :.:::. :::
NP_056 IEKSRDGYVDISLLVSFNKMKKLTTDGKLIARAL-RSSA-VVELDLEGTRIRRK--KPL-
70 80 90 100 110
100 110 120 130 140 150
pF1KB6 EVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKA-FKGSIFVV
: .: .:.::.. .: ... . :.. . :.:. :.. . . :: ::
NP_056 ---GERPKDEDERTVYVELLPKNVNHSWIERVFGKCGNVVYISIPHYKSTGDPKGFAFVE
120 130 140 150 160 170
160 170 180 190 200
pF1KB6 FDSIESAKKFVETPGQKYKETDLLILFKDDYFAK--KNE--------ERKQNKVEAKLRA
:.. :.: : .: .. .:. : : : ::. :.:..: . : :
NP_056 FETKEQAAKAIEFLNNPPEEAP----RKPGIFPKTVKNKPIPALRVVEEKKKKKKKKGRM
180 190 200 210 220
210 220 230 240 250
pF1KB6 KQEQEAKQKLEE-DAEMKSLEE-KIGCLLKFSGDLDD----QTC----REDLHILFSNHG
:.:.. . : :. :. :. . : . . ..:... . : .. .. :.
NP_056 KKEDNIQAKEENMDTSNTSISKMKRSRPTSEGSDIESTEPQKQCSKKKKKRDRVEASSLP
230 240 250 260 270 280
260 270 280 290 300 310
pF1KB6 EIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEGEVEKEALKK
:.. :...: . .. :.: . .. . .:.. : . :. : :
NP_056 EVRTGKRKRSSSEDAESLAPRS-----KVKKIIQKDIIKEASEASKENRDIEISTEEEKD
290 300 310 320 330 340
320 330 340 350 360 370
pF1KB6 IIEDQQESLNKWKSKGRR-FKGKGKGNKAAQPGSGKGKVQFQGKKTKFASDDEHDEHDEN
. .. :: : : : .. : . : .. . : .: ... : .. . .. . . .
NP_056 TGDLKDSSLLKTKRKHKKKHKERHKMGEEVIPLRVLSKSEWMDLKKEYLALQKASMASLK
350 360 370 380 390 400
380 390 400
pF1KB6 GATGPVKRARE-ETDKEEPASKQQKTENGAGDQ
. . .: : :::. : . .:.:. :
NP_056 KTISQIKSESEMETDSGVPQNTGMKNEKTANREECRTQEKVNATGPQFVSGVIVKIISTE
410 420 430 440 450 460
>>NP_001253968 (OMIM: 612026,615071) la-related protein (589 aa)
initn: 223 init1: 107 opt: 290 Z-score: 255.6 bits: 56.8 E(85289): 1.7e-07
Smith-Waterman score: 292; 24.8% identity (56.7% similar) in 427 aa overlap (3-405:31-440)
10 20 30
pF1KB6 MAENGDNEKMAALEAKICHQIEYYFGDFNLPR
:. .. . : : .:....::: :: .
NP_001 MIPNIEGMETESGNQEKVMEEESTEKKKEVEKKKRSRVKQVLADIAKQVDFWFGDANLHK
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB6 DKFLKEQI-KLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTKIRR
:.::.::: : .:.: . ....::....:::: ..:..:: .:.: ..:.. . :.:::
NP_001 DRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARAL-RSSA-VVELDLEGTRIRR
70 80 90 100 110
100 110 120 130 140 150
pF1KB6 SPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKA-F
. ::: : .: .:.::.. .: ... . :.. . :.:. :.. . .
NP_001 K--KPL----GERPKDEDERTVYVELLPKNVNHSWIERVFGKCGNVVYISIPHYKSTGDP
120 130 140 150 160 170
160 170 180 190 200
pF1KB6 KGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDYFAK--KNE--------ERKQNK
:: :: :.. :.: : .: .. .:. : : : ::. :.:..:
NP_001 KGFAFVEFETKEQAAKAIEFLNNPPEEAP----RKPGIFPKTVKNKPIPALRVVEEKKKK
180 190 200 210 220
210 220 230 240 250
pF1KB6 VEAKLRAKQEQEAKQKLEE-DAEMKSLEE-KIGCLLKFSGDLDD----QTC----REDLH
. : : :.:.. . : :. :. :. . : . . ..:... . : .. .
NP_001 KKKKGRMKKEDNIQAKEENMDTSNTSISKMKRSRPTSEGSDIESTEPQKQCSKKKKKRDR
230 240 250 260 270 280
260 270 280 290 300 310
pF1KB6 ILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEGEV
. :. :.. :...: . .. :.: . .. . .:.. : . :.
NP_001 VEASSLPEVRTGKRKRSSSEDAESLAPRS-----KVKKIIQKDIIKEASEASKENRDIEI
290 300 310 320 330 340
320 330 340 350 360
pF1KB6 EKEALKKIIEDQQESLNKWKSKGRR-FKGKGKGNKAAQPGSGKGKVQFQGKKTKFASDDE
: : . .. :: : : : .. : . : .. . : .: ... : .. . ..
NP_001 STEEEKDTGDLKDSSLLKTKRKHKKKHKERHKMGEEVIPLRVLSKSEWMDLKKEYLALQK
350 360 370 380 390 400
370 380 390 400
pF1KB6 HDEHDENGATGPVKRARE-ETDKEEPASKQQKTENGAGDQ
. . . . . .: : :::. : . .:.:. :
NP_001 ASMASLKKTISQIKSESEMETDSGVPQNTGMKNEKTANREECRTQEKVNATGPQFVSGVI
410 420 430 440 450 460
NP_001 VKIISTEPLPGRKQVRDTLAAISEVLYVDLLEGDTECHARFKTPEDAQAVINAYTEINKK
470 480 490 500 510 520
>>XP_016864773 (OMIM: 612059) PREDICTED: la-related prot (824 aa)
initn: 89 init1: 89 opt: 217 Z-score: 192.3 bits: 45.5 E(85289): 0.00056
Smith-Waterman score: 217; 25.5% identity (58.0% similar) in 243 aa overlap (13-242:131-360)
10 20 30 40
pF1KB6 MAENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKL
:. : .::::::. :: :: ::....
XP_016 GPRTPKYMNNITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDA
110 120 130 140 150 160
50 60 70 80 90 100
pF1KB6 DEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTKIRRSPSK-PLPEVT
: :..:. .. .:.:.. ::::...: ::. :: ..:: ..:.. :. : : ::: ..
XP_016 D-GFLPITLIASFHRVQALTTDISLIFAALKDSK--VVEIVDEKVRRREEPEKWPLPPIV
170 180 190 200 210
110 120 130 140 150
pF1KB6 DEYKNDVKN---------RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKG
: ..: .. :. : : :... . . .. ... .:: :....
XP_016 DYSQTDFSQLLNCPEFVPRQHYQK--ETESAPGSPRAVTPVPTKTEEVSNLKTLPKGLSA
220 230 240 250 260 270
160 170 180 190 200
pF1KB6 SIFVVFDS---IESAKKFVETPGQKYKETDLLILFKDDYFAKKNEERKQNKVEAKLRAKQ
:. .:: :: :. .:.. : ... :.. . .: . . :
XP_016 SL-PDLDSENWIEVKKRPRPSPARPKKS-------EESRFSHLTSLPQQLPSQQLMSKDQ
280 290 300 310 320
210 220 230 240 250 260
pF1KB6 EQEAKQKLEEDAEMKSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK
... . . : ::.... . . . .: . .:
XP_016 DEQEELDFLFDEEMEQMDGRKNTFTAWSDEESDYEIDDRDVNKILIVTQTPHYMRRHPGG
330 340 350 360 370 380
270 280 290 300 310 320
pF1KB6 EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEGEVEKEALKKIIEDQQESLNKW
XP_016 DRTGNHTSRAKMSAELAKVINDGLFYYEQDLWAEKFEPEYSQIKQEVENFKKVNMISREQ
390 400 410 420 430 440
>>XP_016864772 (OMIM: 612059) PREDICTED: la-related prot (858 aa)
initn: 89 init1: 89 opt: 217 Z-score: 192.1 bits: 45.5 E(85289): 0.00058
Smith-Waterman score: 217; 25.5% identity (58.0% similar) in 243 aa overlap (13-242:165-394)
10 20 30 40
pF1KB6 MAENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKL
:. : .::::::. :: :: ::....
XP_016 GPRTPKYMNNITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDA
140 150 160 170 180 190
50 60 70 80 90 100
pF1KB6 DEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTKIRRSPSK-PLPEVT
: :..:. .. .:.:.. ::::...: ::. :: ..:: ..:.. :. : : ::: ..
XP_016 D-GFLPITLIASFHRVQALTTDISLIFAALKDSK--VVEIVDEKVRRREEPEKWPLPPIV
200 210 220 230 240 250
110 120 130 140 150
pF1KB6 DEYKNDVKN---------RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKG
: ..: .. :. : : :... . . .. ... .:: :....
XP_016 DYSQTDFSQLLNCPEFVPRQHYQK--ETESAPGSPRAVTPVPTKTEEVSNLKTLPKGLSA
260 270 280 290 300
160 170 180 190 200
pF1KB6 SIFVVFDS---IESAKKFVETPGQKYKETDLLILFKDDYFAKKNEERKQNKVEAKLRAKQ
:. .:: :: :. .:.. : ... :.. . .: . . :
XP_016 SL-PDLDSENWIEVKKRPRPSPARPKKS-------EESRFSHLTSLPQQLPSQQLMSKDQ
310 320 330 340 350 360
210 220 230 240 250 260
pF1KB6 EQEAKQKLEEDAEMKSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK
... . . : ::.... . . . .: . .:
XP_016 DEQEELDFLFDEEMEQMDGRKNTFTAWSDEESDYEIDDRDVNKILIVTQTPHYMRRHPGG
370 380 390 400 410 420
270 280 290 300 310 320
pF1KB6 EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEGEVEKEALKKIIEDQQESLNKW
XP_016 DRTGNHTSRAKMSAELAKVINDGLFYYEQDLWAEKFEPEYSQIKQEVENFKKVNMISREQ
430 440 450 460 470 480
>>XP_011535920 (OMIM: 612059) PREDICTED: la-related prot (891 aa)
initn: 89 init1: 89 opt: 217 Z-score: 191.9 bits: 45.6 E(85289): 0.0006
Smith-Waterman score: 217; 25.5% identity (58.0% similar) in 243 aa overlap (13-242:198-427)
10 20 30 40
pF1KB6 MAENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKL
:. : .::::::. :: :: ::....
XP_011 GPRTPKYMNNITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDA
170 180 190 200 210 220
50 60 70 80 90 100
pF1KB6 DEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTKIRRSPSK-PLPEVT
: :..:. .. .:.:.. ::::...: ::. :: ..:: ..:.. :. : : ::: ..
XP_011 D-GFLPITLIASFHRVQALTTDISLIFAALKDSK--VVEIVDEKVRRREEPEKWPLPPIV
230 240 250 260 270 280
110 120 130 140 150
pF1KB6 DEYKNDVKN---------RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKG
: ..: .. :. : : :... . . .. ... .:: :....
XP_011 DYSQTDFSQLLNCPEFVPRQHYQK--ETESAPGSPRAVTPVPTKTEEVSNLKTLPKGLSA
290 300 310 320 330 340
160 170 180 190 200
pF1KB6 SIFVVFDS---IESAKKFVETPGQKYKETDLLILFKDDYFAKKNEERKQNKVEAKLRAKQ
:. .:: :: :. .:.. : ... :.. . .: . . :
XP_011 SL-PDLDSENWIEVKKRPRPSPARPKKS-------EESRFSHLTSLPQQLPSQQLMSKDQ
350 360 370 380 390
210 220 230 240 250 260
pF1KB6 EQEAKQKLEEDAEMKSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK
... . . : ::.... . . . .: . .:
XP_011 DEQEELDFLFDEEMEQMDGRKNTFTAWSDEESDYEIDDRDVNKILIVTQTPHYMRRHPGG
400 410 420 430 440 450
270 280 290 300 310 320
pF1KB6 EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEGEVEKEALKKIIEDQQESLNKW
XP_011 DRTGNHTSRAKMSAELAKVINDGLFYYEQDLWAEKFEPEYSQIKQEVENFKKVNMISREQ
460 470 480 490 500 510
>>XP_005268465 (OMIM: 612059) PREDICTED: la-related prot (891 aa)
initn: 89 init1: 89 opt: 217 Z-score: 191.9 bits: 45.6 E(85289): 0.0006
Smith-Waterman score: 217; 25.5% identity (58.0% similar) in 243 aa overlap (13-242:198-427)
10 20 30 40
pF1KB6 MAENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKL
:. : .::::::. :: :: ::....
XP_005 GPRTPKYMNNITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDA
170 180 190 200 210 220
50 60 70 80 90 100
pF1KB6 DEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTKIRRSPSK-PLPEVT
: :..:. .. .:.:.. ::::...: ::. :: ..:: ..:.. :. : : ::: ..
XP_005 D-GFLPITLIASFHRVQALTTDISLIFAALKDSK--VVEIVDEKVRRREEPEKWPLPPIV
230 240 250 260 270 280
110 120 130 140 150
pF1KB6 DEYKNDVKN---------RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKG
: ..: .. :. : : :... . . .. ... .:: :....
XP_005 DYSQTDFSQLLNCPEFVPRQHYQK--ETESAPGSPRAVTPVPTKTEEVSNLKTLPKGLSA
290 300 310 320 330 340
160 170 180 190 200
pF1KB6 SIFVVFDS---IESAKKFVETPGQKYKETDLLILFKDDYFAKKNEERKQNKVEAKLRAKQ
:. .:: :: :. .:.. : ... :.. . .: . . :
XP_005 SL-PDLDSENWIEVKKRPRPSPARPKKS-------EESRFSHLTSLPQQLPSQQLMSKDQ
350 360 370 380 390
210 220 230 240 250 260
pF1KB6 EQEAKQKLEEDAEMKSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK
... . . : ::.... . . . .: . .:
XP_005 DEQEELDFLFDEEMEQMDGRKNTFTAWSDEESDYEIDDRDVNKILIVTQTPHYMRRHPGG
400 410 420 430 440 450
270 280 290 300 310 320
pF1KB6 EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEGEVEKEALKKIIEDQQESLNKW
XP_005 DRTGNHTSRAKMSAELAKVINDGLFYYEQDLWAEKFEPEYSQIKQEVENFKKVNMISREQ
460 470 480 490 500 510
>>XP_005268464 (OMIM: 612059) PREDICTED: la-related prot (891 aa)
initn: 89 init1: 89 opt: 217 Z-score: 191.9 bits: 45.6 E(85289): 0.0006
Smith-Waterman score: 217; 25.5% identity (58.0% similar) in 243 aa overlap (13-242:198-427)
10 20 30 40
pF1KB6 MAENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKL
:. : .::::::. :: :: ::....
XP_005 GPRTPKYMNNITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDA
170 180 190 200 210 220
50 60 70 80 90 100
pF1KB6 DEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTKIRRSPSK-PLPEVT
: :..:. .. .:.:.. ::::...: ::. :: ..:: ..:.. :. : : ::: ..
XP_005 D-GFLPITLIASFHRVQALTTDISLIFAALKDSK--VVEIVDEKVRRREEPEKWPLPPIV
230 240 250 260 270 280
110 120 130 140 150
pF1KB6 DEYKNDVKN---------RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKG
: ..: .. :. : : :... . . .. ... .:: :....
XP_005 DYSQTDFSQLLNCPEFVPRQHYQK--ETESAPGSPRAVTPVPTKTEEVSNLKTLPKGLSA
290 300 310 320 330 340
160 170 180 190 200
pF1KB6 SIFVVFDS---IESAKKFVETPGQKYKETDLLILFKDDYFAKKNEERKQNKVEAKLRAKQ
:. .:: :: :. .:.. : ... :.. . .: . . :
XP_005 SL-PDLDSENWIEVKKRPRPSPARPKKS-------EESRFSHLTSLPQQLPSQQLMSKDQ
350 360 370 380 390
210 220 230 240 250 260
pF1KB6 EQEAKQKLEEDAEMKSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK
... . . : ::.... . . . .: . .:
XP_005 DEQEELDFLFDEEMEQMDGRKNTFTAWSDEESDYEIDDRDVNKILIVTQTPHYMRRHPGG
400 410 420 430 440 450
270 280 290 300 310 320
pF1KB6 EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEGEVEKEALKKIIEDQQESLNKW
XP_005 DRTGNHTSRAKMSAELAKVINDGLFYYEQDLWAEKFEPEYSQIKQEVENFKKVNMISREQ
460 470 480 490 500 510
408 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 13:31:25 2016 done: Sat Nov 5 13:31:26 2016
Total Scan time: 7.360 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]