Result of FASTA (omim) for
pF1KB6593
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6593, 377 aa
1>>>pF1KB6593 377 - 377 aa - 377 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1227+/-0.000336; mu= 13.8436+/- 0.021
mean_var=92.9539+/-18.911, 0's: 0 Z-trim(116.9): 10 B-trim: 362 in 1/52
Lambda= 0.133027
statistics sampled from 28430 (28440) to 28430 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.333), width: 16
Scan time: 7.620
The best scores are: opt bits E(85289)
NP_002801 (OMIM: 601648) 26S proteasome non-ATPase ( 377) 2416 473.6 3.3e-133
NP_001317621 (OMIM: 601648) 26S proteasome non-ATP ( 380) 2400 470.5 2.8e-132
XP_016857345 (OMIM: 601648) PREDICTED: 26S proteas ( 330) 2054 404.1 2.4e-112
XP_006711527 (OMIM: 601648) PREDICTED: 26S proteas ( 333) 2038 401.0 2.1e-111
>>NP_002801 (OMIM: 601648) 26S proteasome non-ATPase reg (377 aa)
initn: 2416 init1: 2416 opt: 2416 Z-score: 2512.4 bits: 473.6 E(85289): 3.3e-133
Smith-Waterman score: 2416; 100.0% identity (100.0% similar) in 377 aa overlap (1-377:1-377)
10 20 30 40 50 60
pF1KB6 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 EKDLVKLAKRLKKEKVNVDIINFGEEEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPSLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 EKDLVKLAKRLKKEKVNVDIINFGEEEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPSLA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DALISSPILAGEGGAMLGLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 DALISSPILAGEGGAMLGLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 ASAAEAGIATTGTEDSDDALLKMTISQQEFGRTGLPDLSSMTEEEQIAYAMQMSLQGAEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ASAAEAGIATTGTEDSDDALLKMTISQQEFGRTGLPDLSSMTEEEQIAYAMQMSLQGAEF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 GQAESADIDASSAMDTSEPAKEEDDYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GQAESADIDASSAMDTSEPAKEEDDYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLA
310 320 330 340 350 360
370
pF1KB6 SQATKDGKKDKKEEDKK
:::::::::::::::::
NP_002 SQATKDGKKDKKEEDKK
370
>>NP_001317621 (OMIM: 601648) 26S proteasome non-ATPase (380 aa)
initn: 1633 init1: 1633 opt: 2400 Z-score: 2495.8 bits: 470.5 E(85289): 2.8e-132
Smith-Waterman score: 2400; 99.2% identity (99.2% similar) in 380 aa overlap (1-377:1-380)
10 20 30 40 50 60
pF1KB6 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 EKDLVKLAKRLKKEKVNVDIINFGEEEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPSLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKDLVKLAKRLKKEKVNVDIINFGEEEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPSLA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DALISSPILAGEGGAMLGLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DALISSPILAGEGGAMLGLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAA
190 200 210 220 230 240
250 260 270 280 290
pF1KB6 ASAAEAGIATTGTE---DSDDALLKMTISQQEFGRTGLPDLSSMTEEEQIAYAMQMSLQG
:::::::::::::: :::::::::::::::::::::::::::::::::::::::::::
NP_001 ASAAEAGIATTGTEGERDSDDALLKMTISQQEFGRTGLPDLSSMTEEEQIAYAMQMSLQG
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB6 AEFGQAESADIDASSAMDTSEPAKEEDDYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AEFGQAESADIDASSAMDTSEPAKEEDDYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMG
310 320 330 340 350 360
360 370
pF1KB6 SLASQATKDGKKDKKEEDKK
::::::::::::::::::::
NP_001 SLASQATKDGKKDKKEEDKK
370 380
>>XP_016857345 (OMIM: 601648) PREDICTED: 26S proteasome (330 aa)
initn: 2054 init1: 2054 opt: 2054 Z-score: 2137.8 bits: 404.1 E(85289): 2.4e-112
Smith-Waterman score: 2054; 99.1% identity (99.7% similar) in 325 aa overlap (53-377:6-330)
30 40 50 60 70 80
pF1KB6 PTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEVLTTLTPDTGRILSKLHTVQPKG
:.. ::::::::::::::::::::::::::
XP_016 MVLESTMVCDCEVLTTLTPDTGRILSKLHTVQPKG
10 20 30
90 100 110 120 130 140
pF1KB6 KITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIIN
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB6 FGEEEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPSLADALISSPILAGEGGAMLGLGAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FGEEEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPSLADALISSPILAGEGGAMLGLGAS
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB6 DFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAAASAAEAGIATTGTEDSDDALLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAAASAAEAGIATTGTEDSDDALLK
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB6 MTISQQEFGRTGLPDLSSMTEEEQIAYAMQMSLQGAEFGQAESADIDASSAMDTSEPAKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MTISQQEFGRTGLPDLSSMTEEEQIAYAMQMSLQGAEFGQAESADIDASSAMDTSEPAKE
220 230 240 250 260 270
330 340 350 360 370
pF1KB6 EDDYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQATKDGKKDKKEEDKK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EDDYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQATKDGKKDKKEEDKK
280 290 300 310 320 330
>>XP_006711527 (OMIM: 601648) PREDICTED: 26S proteasome (333 aa)
initn: 1271 init1: 1271 opt: 2038 Z-score: 2121.2 bits: 401.0 E(85289): 2.1e-111
Smith-Waterman score: 2038; 98.2% identity (98.8% similar) in 328 aa overlap (53-377:6-333)
30 40 50 60 70 80
pF1KB6 PTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEVLTTLTPDTGRILSKLHTVQPKG
:.. ::::::::::::::::::::::::::
XP_006 MVLESTMVCDCEVLTTLTPDTGRILSKLHTVQPKG
10 20 30
90 100 110 120 130 140
pF1KB6 KITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIIN
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB6 FGEEEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPSLADALISSPILAGEGGAMLGLGAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FGEEEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPSLADALISSPILAGEGGAMLGLGAS
100 110 120 130 140 150
210 220 230 240 250
pF1KB6 DFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAAASAAEAGIATTGTE---DSDDA
:::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
XP_006 DFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAAASAAEAGIATTGTEGERDSDDA
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB6 LLKMTISQQEFGRTGLPDLSSMTEEEQIAYAMQMSLQGAEFGQAESADIDASSAMDTSEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LLKMTISQQEFGRTGLPDLSSMTEEEQIAYAMQMSLQGAEFGQAESADIDASSAMDTSEP
220 230 240 250 260 270
320 330 340 350 360 370
pF1KB6 AKEEDDYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQATKDGKKDKKEEDKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AKEEDDYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQATKDGKKDKKEEDKK
280 290 300 310 320 330
377 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 11:03:04 2016 done: Sat Nov 5 11:03:05 2016
Total Scan time: 7.620 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]