FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6592, 406 aa
  1>>>pF1KB6592 406 - 406 aa - 406 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2749+/-0.00119; mu= 11.7323+/- 0.070
 mean_var=70.1531+/-14.201, 0's: 0 Z-trim(101.2): 54  B-trim: 249 in 1/51
 Lambda= 0.153127
 statistics sampled from 6384 (6406) to 6384 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.551), E-opt: 0.2 (0.197), width:  16
 Scan time:  2.800

The best scores are:                                      opt bits E(32554)
CCDS3600.1 COPS4 gene_id:51138|Hs108|chr4          ( 406) 2594 582.6 2.2e-166
CCDS82935.1 COPS4 gene_id:51138|Hs108|chr4         ( 420) 2305 518.8 3.7e-147
CCDS58909.1 COPS4 gene_id:51138|Hs108|chr4         ( 352) 2139 482.1 3.4e-136


>>CCDS3600.1 COPS4 gene_id:51138|Hs108|chr4               (406 aa)
 initn: 2594 init1: 2594 opt: 2594  Z-score: 3100.7  bits: 582.6 E(32554): 2.2e-166
Smith-Waterman score: 2594; 100.0% identity (100.0% similar) in 406 aa overlap (1-406:1-406)

               10        20        30        40        50        60
pF1KB6 MAAAVRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 MAAAVRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ISRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 ISRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 RNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 RNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 EQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 EQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 QRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 QRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSIL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 DRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 DRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVH
              310       320       330       340       350       360

              370       380       390       400      
pF1KB6 FETREALPTWDKQIQSLCFQVNNLLEKISQTAPEWTAQAMEAQMAQ
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 FETREALPTWDKQIQSLCFQVNNLLEKISQTAPEWTAQAMEAQMAQ
              370       380       390       400      

>>CCDS82935.1 COPS4 gene_id:51138|Hs108|chr4              (420 aa)
 initn: 2305 init1: 2305 opt: 2305  Z-score: 2755.4  bits: 518.8 E(32554): 3.7e-147
Smith-Waterman score: 2305; 100.0% identity (100.0% similar) in 363 aa overlap (1-363:1-363)

               10        20        30        40        50        60
pF1KB6 MAAAVRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MAAAVRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ISRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ISRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 RNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 RNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 EQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 QRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 QRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSIL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 DRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 DRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVH
              310       320       330       340       350       360

              370       380       390       400                    
pF1KB6 FETREALPTWDKQIQSLCFQVNNLLEKISQTAPEWTAQAMEAQMAQ              
       :::                                                         
CCDS82 FETSGNHQSIFCLWIYLVWIVHINGIIQYVTCDLLADSTQHSIFRVHPCHGSTRSPANVG
              370       380       390       400       410       420

>>CCDS58909.1 COPS4 gene_id:51138|Hs108|chr4              (352 aa)
 initn: 2128 init1: 2128 opt: 2139  Z-score: 2558.5  bits: 482.1 E(32554): 3.4e-136
Smith-Waterman score: 2139; 96.0% identity (97.7% similar) in 354 aa overlap (1-354:1-352)

               10        20        30        40        50        60
pF1KB6 MAAAVRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MAAAVRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ISRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ISRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 RNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 RNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 EQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 EQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 QRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 QRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSIL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 DRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVH
       :::::::::::::::::::::::::::::::::: ::  .. :.  : : :...      
CCDS58 DRAVIEHNLLSASKLYNNITFEELGALLEIPAAKHEKPCQRGIS--RSNHFVSK      
              310       320       330       340         350        

              370       380       390       400      
pF1KB6 FETREALPTWDKQIQSLCFQVNNLLEKISQTAPEWTAQAMEAQMAQ




406 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:41:49 2016 done: Sat Nov  5 20:41:49 2016
 Total Scan time:  2.800 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]