Result of FASTA (ccds) for
pF1KB6588
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6588, 406 aa
1>>>pF1KB6588 406 - 406 aa - 406 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6568+/-0.000929; mu= 10.2694+/- 0.056
mean_var=95.7788+/-18.924, 0's: 0 Z-trim(107.1): 56 B-trim: 0 in 0/53
Lambda= 0.131051
statistics sampled from 9326 (9382) to 9326 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.656), E-opt: 0.2 (0.288), width: 16
Scan time: 2.760
The best scores are: opt bits E(32554)
CCDS11645.1 PSMC5 gene_id:5705|Hs108|chr17 ( 406) 2613 504.5 7.3e-143
CCDS56043.1 PSMC5 gene_id:5705|Hs108|chr17 ( 398) 2557 493.9 1.1e-139
CCDS5731.1 PSMC2 gene_id:5701|Hs108|chr7 ( 433) 1168 231.3 1.3e-60
CCDS32139.1 PSMC1 gene_id:5700|Hs108|chr14 ( 440) 1161 230.0 3.4e-60
CCDS81837.1 PSMC1 gene_id:5700|Hs108|chr14 ( 367) 1156 229.0 5.6e-60
CCDS9710.2 PSMC6 gene_id:5706|Hs108|chr14 ( 403) 1141 226.2 4.4e-59
CCDS7935.1 PSMC3 gene_id:5702|Hs108|chr11 ( 439) 1055 209.9 3.7e-54
CCDS12547.1 PSMC4 gene_id:5704|Hs108|chr19 ( 418) 1052 209.4 5.2e-54
CCDS46076.1 PSMC4 gene_id:5704|Hs108|chr19 ( 387) 1051 209.2 5.6e-54
CCDS11859.1 AFG3L2 gene_id:10939|Hs108|chr18 ( 797) 713 145.4 1.8e-34
CCDS6573.1 VCP gene_id:7415|Hs108|chr9 ( 806) 689 140.9 4.2e-33
CCDS10977.1 SPG7 gene_id:6687|Hs108|chr16 ( 795) 634 130.4 5.7e-30
CCDS3730.1 SPATA5 gene_id:166378|Hs108|chr4 ( 893) 631 129.9 9.3e-30
CCDS4877.1 PEX6 gene_id:5190|Hs108|chr6 ( 980) 627 129.2 1.7e-29
CCDS58072.1 YME1L1 gene_id:10730|Hs108|chr10 ( 683) 619 127.6 3.5e-29
CCDS7151.1 YME1L1 gene_id:10730|Hs108|chr10 ( 716) 619 127.6 3.7e-29
CCDS7152.1 YME1L1 gene_id:10730|Hs108|chr10 ( 773) 619 127.6 3.9e-29
CCDS6343.1 ATAD2 gene_id:29028|Hs108|chr8 (1390) 610 126.0 2.1e-28
CCDS64710.1 PEX1 gene_id:5189|Hs108|chr7 (1226) 597 123.5 1.1e-27
CCDS5627.1 PEX1 gene_id:5189|Hs108|chr7 (1283) 597 123.5 1.1e-27
CCDS46227.1 ATAD2B gene_id:54454|Hs108|chr2 (1458) 581 120.5 1e-26
CCDS58062.1 NVL gene_id:4931|Hs108|chr1 ( 667) 563 117.0 5.3e-26
CCDS5217.1 KATNA1 gene_id:11104|Hs108|chr6 ( 491) 557 115.8 9e-26
CCDS31956.1 KATNAL1 gene_id:84056|Hs108|chr13 ( 490) 556 115.6 1e-25
CCDS1542.1 NVL gene_id:4931|Hs108|chr1 ( 750) 555 115.5 1.7e-25
CCDS58063.1 NVL gene_id:4931|Hs108|chr1 ( 765) 555 115.5 1.7e-25
CCDS1541.1 NVL gene_id:4931|Hs108|chr1 ( 856) 555 115.5 1.9e-25
CCDS32828.1 KATNAL2 gene_id:83473|Hs108|chr18 ( 466) 509 106.7 4.6e-23
CCDS7386.1 ATAD1 gene_id:84896|Hs108|chr10 ( 361) 506 106.1 5.5e-23
CCDS1779.1 SPAST gene_id:6683|Hs108|chr2 ( 584) 503 105.6 1.2e-22
CCDS1778.1 SPAST gene_id:6683|Hs108|chr2 ( 616) 503 105.6 1.3e-22
CCDS45517.1 VPS4A gene_id:27183|Hs108|chr16 ( 437) 498 104.6 1.8e-22
CCDS11983.1 VPS4B gene_id:9525|Hs108|chr18 ( 444) 488 102.7 6.9e-22
CCDS5510.1 FIGNL1 gene_id:63979|Hs108|chr7 ( 674) 489 103.0 8.8e-22
CCDS42354.1 NSF gene_id:4905|Hs108|chr17 ( 744) 472 99.8 8.9e-21
CCDS81877.1 SPATA5L1 gene_id:79029|Hs108|chr15 ( 620) 418 89.6 8.9e-18
CCDS10123.1 SPATA5L1 gene_id:79029|Hs108|chr15 ( 753) 418 89.6 1.1e-17
CCDS2221.2 FIGN gene_id:55137|Hs108|chr2 ( 759) 384 83.2 9.2e-16
CCDS56456.1 KATNA1 gene_id:11104|Hs108|chr6 ( 311) 347 76.0 5.4e-14
CCDS10978.1 SPG7 gene_id:6687|Hs108|chr16 ( 489) 349 76.5 6.2e-14
>>CCDS11645.1 PSMC5 gene_id:5705|Hs108|chr17 (406 aa)
initn: 2613 init1: 2613 opt: 2613 Z-score: 2678.3 bits: 504.5 E(32554): 7.3e-143
Smith-Waterman score: 2613; 100.0% identity (100.0% similar) in 406 aa overlap (1-406:1-406)
10 20 30 40 50 60
pF1KB6 MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 HAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 LDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVK
310 320 330 340 350 360
370 380 390 400
pF1KB6 GVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK
::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK
370 380 390 400
>>CCDS56043.1 PSMC5 gene_id:5705|Hs108|chr17 (398 aa)
initn: 2557 init1: 2557 opt: 2557 Z-score: 2621.2 bits: 493.9 E(32554): 1.1e-139
Smith-Waterman score: 2557; 100.0% identity (100.0% similar) in 398 aa overlap (9-406:1-398)
10 20 30 40 50 60
pF1KB6 MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLR
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLR
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDS
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB6 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB6 HAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 HAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB6 LDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVK
300 310 320 330 340 350
370 380 390 400
pF1KB6 GVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK
::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 GVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK
360 370 380 390
>>CCDS5731.1 PSMC2 gene_id:5701|Hs108|chr7 (433 aa)
initn: 1149 init1: 1149 opt: 1168 Z-score: 1201.4 bits: 231.3 E(32554): 1.3e-60
Smith-Waterman score: 1168; 50.8% identity (73.9% similar) in 372 aa overlap (22-392:53-418)
10 20 30 40 50
pF1KB6 MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNE
: :.::.:: : : .. .
CCDS57 RALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGI---KESDTGLAPPALWD
30 40 50 60 70
60 70 80 90 100 110
pF1KB6 LNAKVRLLREELQLLQEQGSYVGEVVRA-MDKKKVLVKVHPEGKFVVDVDKNIDINDVTP
: : . :. : : : . ... : . : ...:. .:::::.. .. .:.
CCDS57 LAADKQTLQSEQPL---QVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEE
80 90 100 110 120 130
120 130 140 150 160 170
pF1KB6 NCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVK
. ::.. ..: .: :: :.:: :..:.::. :: :: .:: .::....::.: :.
CCDS57 GMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLL
140 150 160 170 180 190
180 190 200 210 220 230
pF1KB6 HPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARM
::: : ::: ::::::.::::::::: :::::..:: :::: :::::::..::::::
CCDS57 HPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARM
200 210 220 230 240 250
240 250 260 270 280 290
pF1KB6 VRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIK
::::: ::: . .::.::::.::..:.. :.:::.:::::::::.::::::. :::
CCDS57 VRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIK
260 270 280 290 300 310
300 310 320 330 340 350
pF1KB6 VIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEL
:.::::: : :: ::.::::.:::::: :. :.: :.:::.:.:.. : : .. .:.:
CCDS57 VLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARL
320 330 340 350 360 370
360 370 380 390 400
pF1KB6 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK
:...:::...:::::::.:.: :: .:..:: :: ::..
CCDS57 CPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIKSYAKFSATPRYMTYN
380 390 400 410 420 430
>>CCDS32139.1 PSMC1 gene_id:5700|Hs108|chr14 (440 aa)
initn: 1096 init1: 1073 opt: 1161 Z-score: 1194.1 bits: 230.0 E(32554): 3.4e-60
Smith-Waterman score: 1161; 46.3% identity (74.8% similar) in 393 aa overlap (4-396:44-432)
10 20 30
pF1KB6 MALDGPEQMELEEGKAGSGLRQYYLSKIEELQL
:. .. : .. :. : .:.. :
CCDS32 GKKDDKDKKKKYEPPVPTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLL
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB6 IVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEG
. ... : : : . :. : . : ... :. :: . . .: ....:.. .
CCDS32 M----EEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGS
80 90 100 110 120
100 110 120 130 140 150
pF1KB6 KFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGG
. :.. . .: . . :.: : : . ... .: . .::::..: :::.:. :: :::
CCDS32 EHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGG
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB6 LDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR
::.::.:::: .:::. ::: .: .:: ::::.:::::::::::::.:::..:. ::.:
CCDS32 LDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLR
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB6 VSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTM
: ::::.::..:.: ..::::: .:.::::::.:.::::.::..: ...:::. :.::::
CCDS32 VVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTM
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB6 LELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHS
::::::::::.. ..:::::::::. :: ::.:::::::::::: :.:... :..::.
CCDS32 LELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHT
310 320 330 340 350 360
340 350 360 370 380 390
pF1KB6 RKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK
.:.:. ..: . :::..:..:::::..::::::..::.:::. . .:. :
CCDS32 SRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYK
370 380 390 400 410 420
400
pF1KB6 DSEKNMSIKKLWK
.:
CCDS32 KQEGTPEGLYL
430 440
>>CCDS81837.1 PSMC1 gene_id:5700|Hs108|chr14 (367 aa)
initn: 1096 init1: 1073 opt: 1156 Z-score: 1190.2 bits: 229.0 E(32554): 5.6e-60
Smith-Waterman score: 1156; 49.9% identity (77.9% similar) in 353 aa overlap (44-396:7-359)
20 30 40 50 60 70
pF1KB6 GKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYV
: : : . :. : . : ... :. :
CCDS81 MEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSV
10 20 30
80 90 100 110 120 130
pF1KB6 GEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDP
: . . .: ....:.. .. :.. . .: . . :.: : : . ... .: . .::
CCDS81 GTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDP
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB6 LVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPG
::..: :::.:. :: :::::.::.:::: .:::. ::: .: .:: ::::.::::::
CCDS81 LVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPG
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB6 TGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDS
:::::::.:::..:. ::.:: ::::.::..:.: ..::::: .:.::::::.:.::::.
CCDS81 TGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDA
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB6 IGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDR
::..: ...:::. :.::::::::::::::.. ..:::::::::. :: ::.:::::::
CCDS81 IGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDR
220 230 240 250 260 270
320 330 340 350 360 370
pF1KB6 KIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRE
::::: :.:... :..::. .:.:. ..: . :::..:..:::::..::::
CCDS81 KIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRE
280 290 300 310 320 330
380 390 400
pF1KB6 RRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK
::..::.:::. . .:. : .:
CCDS81 RRMKVTNEDFKKSKENVLYKKQEGTPEGLYL
340 350 360
>>CCDS9710.2 PSMC6 gene_id:5706|Hs108|chr14 (403 aa)
initn: 1136 init1: 1136 opt: 1141 Z-score: 1174.3 bits: 226.2 E(32554): 4.4e-59
Smith-Waterman score: 1141; 50.3% identity (76.1% similar) in 356 aa overlap (42-397:40-393)
20 30 40 50 60 70
pF1KB6 EEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGS
:..:. : .::. . . ...:. :: :.
CCDS97 RRLLIMADPRDKALQDYRKKLLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQ
10 20 30 40 50 60
80 90 100 110 120 130
pF1KB6 YVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKV
::::.. . ..: .::. ..:: ...: . . :. :::: . :. . :: .:
CCDS97 IVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREV
70 80 90 100 110 120
140 150 160 170 180 190
pF1KB6 DPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGP
:::: : : . .: ::::..::.:..::::::. .::::. .:: ::: :::::
CCDS97 DPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGP
130 140 150 160 170 180
200 210 220 230 240 250
pF1KB6 PGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEI
::::::::::::: . ::.:..: .: .:.:.:::.::..::.: .::.: : :::::::
CCDS97 PGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEI
190 200 210 220 230 240
260 270 280 290 300 310
pF1KB6 DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRI
:.::. :. :...: :.:::..:::::.:::.. . .:.:::::: : :: :::::::.
CCDS97 DAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRL
250 260 270 280 290 300
320 330 340 350 360 370
pF1KB6 DRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYAL
::::.. :::.:::::::::. .. :. . :..: : .::....:::::::.:.
CCDS97 DRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAI
310 320 330 340 350 360
380 390 400
pF1KB6 RERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK
: . :.:::: :: :: ::.:
CCDS97 RADHDFVVQEDFMKAVRKVA--DSKKLESKLDYKPV
370 380 390 400
>>CCDS7935.1 PSMC3 gene_id:5702|Hs108|chr11 (439 aa)
initn: 1041 init1: 1019 opt: 1055 Z-score: 1085.8 bits: 209.9 E(32554): 3.7e-54
Smith-Waterman score: 1055; 45.1% identity (73.7% similar) in 377 aa overlap (20-393:55-430)
10 20 30 40
pF1KB6 MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQR
... : .::: . . ..: .......
CCDS79 EQDGIGEEVLKMSTEEIIQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNK
30 40 50 60 70 80
50 60 70 80 90 100
pF1KB6 NE---LNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDIN
. .. ..:: . . .:.:. . .. : ...:. . . . : .: .
CCDS79 TLPYLVSNVIELLDVDPNDQEEDGANI-DLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAE
90 100 110 120 130 140
110 120 130 140 150 160
pF1KB6 DVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIE
. :. :.. .::: . . ::.. : :. : :.. : : ::::::::.:. :.:
CCDS79 KLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIV
150 160 170 180 190 200
170 180 190 200 210 220
pF1KB6 LPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGE
::..: : :: ::: :::::.:::::::::::::: : .: ::....: .::: :::.
CCDS79 LPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGD
210 220 230 240 250 260
230 240 250 260 270 280
pF1KB6 GARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEAT
::..::. :..:.:.::::::.::.:.::..:... ..:: ::::::::::::::::. .
CCDS79 GAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPN
270 280 290 300 310 320
290 300 310 320 330 340
pF1KB6 KNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRK
..::: ::::.:::: :::: ::.::::::: :::::: :..:::::::.. .: ..
CCDS79 TQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEE
330 340 350 360 370 380
350 360 370 380 390 400
pF1KB6 IAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK
.:. .::. :.::.:::: :::. ...:.::. .. .:. :
CCDS79 LARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYYA
390 400 410 420 430
>>CCDS12547.1 PSMC4 gene_id:5704|Hs108|chr19 (418 aa)
initn: 1045 init1: 1003 opt: 1052 Z-score: 1083.1 bits: 209.4 E(32554): 5.2e-54
Smith-Waterman score: 1073; 42.5% identity (71.4% similar) in 398 aa overlap (1-398:27-414)
10 20 30
pF1KB6 MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLI
... ::: .::. . : : .: .
CCDS12 MEEIGILVEKAQDEIPALSVSRPQTGLSFLGPEPEDLEDLYSRYKKLQQELEFLEVQEEY
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB6 VNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGK
..:...::.. . :.:. ::.. .: .:. ..:.:.. ..: ..
CCDS12 IKDEQKNLKK-----EFLHAQ-----EEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSN
70 80 90 100 110
100 110 120 130 140 150
pF1KB6 FVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGL
. : . ..:: . . :: :::.. : .: .:: ..: . .. .. :: : :::.
CCDS12 YYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGM
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB6 DKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRV
: : .:..:..:::. : ::.. .:: :.:::.::::: :::.::.:::::: .::::
CCDS12 DIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRV
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB6 SGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTML
:::.:::..::: ::::..: .:.:.::.:::.::::.:...:... .:.: :::: .:
CCDS12 VGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILL
240 250 260 270 280 290
280 290 300 310 320 330
pF1KB6 ELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSR
:::::.:::. . :.:::::::: : :: :::::::.::::::: :... . :.. .
CCDS12 ELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITS
300 310 320 330 340 350
340 350 360 370 380 390
pF1KB6 KMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKD
::::.. ..:. . :::.....: :.:: :.:: : : .::: : :..::
CCDS12 KMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKD
360 370 380 390 400 410
400
pF1KB6 SEKNMSIKKLWK
...
CCDS12 EQEHEFYK
>>CCDS46076.1 PSMC4 gene_id:5704|Hs108|chr19 (387 aa)
initn: 1026 init1: 1003 opt: 1051 Z-score: 1082.6 bits: 209.2 E(32554): 5.6e-54
Smith-Waterman score: 1051; 44.0% identity (72.7% similar) in 366 aa overlap (33-398:18-383)
10 20 30 40 50 60
pF1KB6 LDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREE
: :. . .: : . ..:. .::
CCDS46 MEEIGILVEKAQDEIPALSVSRPQTGLSFLGPEPEDLEDLYSRYKEE
10 20 30 40
70 80 90 100 110 120
pF1KB6 LQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYT
.. .: .:. ..:.:.. ..: ... : . ..:: . . :: :::.. : .
CCDS46 VKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNA
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB6 LHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQ
: .:: ..: . .. .. :: : :::.: : .:..:..:::. : ::.. .::
CCDS46 LVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDP
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB6 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHA
:.:::.::::: :::.::.:::::: .:::: :::.:::..::: ::::..: .:.:.:
CCDS46 PRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENA
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB6 PSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILD
:.:::.::::.:...:... .:.: :::: .::::::.:::. . :.:::::::: : ::
CCDS46 PAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLD
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB6 SALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGV
:::::::.::::::: :... . :.. . ::::.. ..:. . :::.....
CCDS46 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSI
290 300 310 320 330 340
370 380 390 400
pF1KB6 CTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK
: :.:: :.:: : : .::: : :..:: ...
CCDS46 CQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEFYK
350 360 370 380
>>CCDS11859.1 AFG3L2 gene_id:10939|Hs108|chr18 (797 aa)
initn: 706 init1: 558 opt: 713 Z-score: 732.3 bits: 145.4 E(32554): 1.8e-34
Smith-Waterman score: 713; 44.2% identity (74.5% similar) in 251 aa overlap (145-391:304-553)
120 130 140 150 160 170
pF1KB6 ALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPEL
: .. ..: .. :: : ... .:.:.
CCDS11 GPAGIGRTGRGMGGLFSVGETTAKVLKDEIDVKFKDVAGCEEAKLEIMEFVNF-LKNPKQ
280 290 300 310 320 330
180 190 200 210 220 230
pF1KB6 FEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVREL
.. :: :::..: :::::::::::.:.: ... :: :::::... :.: : ::.:
CCDS11 YQDLGAKIPKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDL
340 350 360 370 380 390
240 250 260 270 280 290
pF1KB6 FVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMA
:..::..:: :.:.::::..: .: .:. ::.:: . :. .:: ..:::..: :. .. .
CCDS11 FALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAG
400 410 420 430 440 450
300 310 320 330 340 350
pF1KB6 TNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGIN----LRKIAEL
::: :::: :::::::.::.: . ::. ..: .:.:.: : ..: .. ::.: :
CCDS11 TNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSTLEKDKLARKLASL
460 470 480 490 500 510
360 370 380 390 400
pF1KB6 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK
:: :::.: .::.::.. : :. ..:. ::.:. .:.
CCDS11 TPGFSGADVANVCNEAALIAARHLSDSINQKHFEQAIERVIGGLEKKTQVLQPEEKKTVA
520 530 540 550 560 570
CCDS11 YHEAGHAVAGWYLEHADPLLKVSIIPRGKGLGYAQYLPKEQYLYTKEQLLDRMCMTLGGR
580 590 600 610 620 630
406 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 23:23:40 2016 done: Fri Nov 4 23:23:40 2016
Total Scan time: 2.760 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]