Result of FASTA (omim) for
pF1KB6587
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6587, 355 aa
1>>>pF1KB6587 355 - 355 aa - 355 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7422+/-0.000302; mu= 11.4741+/- 0.019
mean_var=123.6284+/-24.506, 0's: 0 Z-trim(121.0): 16 B-trim: 275 in 2/57
Lambda= 0.115349
statistics sampled from 36865 (36888) to 36865 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.433), width: 16
Scan time: 9.110
The best scores are: opt bits E(85289)
NP_954672 (OMIM: 609503) testicular haploid expres ( 355) 2383 407.1 3.1e-113
XP_011526352 (OMIM: 609503) PREDICTED: testicular ( 423) 1875 322.6 1e-87
NP_057669 (OMIM: 609503) testicular haploid expres ( 379) 1449 251.6 2e-66
XP_011526353 (OMIM: 609503) PREDICTED: testicular ( 379) 996 176.3 1e-43
XP_011526351 (OMIM: 609503) PREDICTED: testicular ( 447) 997 176.5 1e-43
XP_011526354 (OMIM: 609503) PREDICTED: testicular ( 249) 945 167.6 2.6e-41
XP_016882536 (OMIM: 145900,605725,614895) PREDICTE (1427) 211 46.0 0.00059
XP_016882535 (OMIM: 145900,605725,614895) PREDICTE (1427) 211 46.0 0.00059
NP_870998 (OMIM: 145900,605725,614895) periaxin is (1461) 211 46.1 0.00061
XP_011525473 (OMIM: 145900,605725,614895) PREDICTE (1461) 211 46.1 0.00061
>>NP_954672 (OMIM: 609503) testicular haploid expressed (355 aa)
initn: 2383 init1: 2383 opt: 2383 Z-score: 2153.8 bits: 407.1 E(85289): 3.1e-113
Smith-Waterman score: 2383; 100.0% identity (100.0% similar) in 355 aa overlap (1-355:1-355)
10 20 30 40 50 60
pF1KB6 MGDSRRRSLGNQPSSEAAGRSEREQDGDPRGLQSSVYESRRVTDPERQDLDNAELGPEDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 MGDSRRRSLGNQPSSEAAGRSEREQDGDPRGLQSSVYESRRVTDPERQDLDNAELGPEDP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 EEELPPEEVAGEEFPETLDPKEALSELERVLDKDLEEDIPEISRLSISQKLPSTTMTKAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 EEELPPEEVAGEEFPETLDPKEALSELERVLDKDLEEDIPEISRLSISQKLPSTTMTKAR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 KRRRRRRLMELAEPKINWQVLKDRPSVYWTERFLEDTTLTITVPAVSRRVEELSRPKRFY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 KRRRRRRLMELAEPKINWQVLKDRPSVYWTERFLEDTTLTITVPAVSRRVEELSRPKRFY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 LEYYNNNRTTPVWPIPRSSLEYRASSRLKELAAPKIRDNFWSMPMSEVSQVSRAAQMAVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 LEYYNNNRTTPVWPIPRSSLEYRASSRLKELAAPKIRDNFWSMPMSEVSQVSRAAQMAVP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 SSRILQLSKPKAPATLLEEWDPVPKPKPHVSDHNRLLHLARPKAQSDKCVPDRDPRWEVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 SSRILQLSKPKAPATLLEEWDPVPKPKPHVSDHNRLLHLARPKAQSDKCVPDRDPRWEVL
250 260 270 280 290 300
310 320 330 340 350
pF1KB6 DVTKKVVASPRIISLAKPKVRKGLNEGYDRRPLASMSLPPPKASPEKCDQPRPGL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 DVTKKVVASPRIISLAKPKVRKGLNEGYDRRPLASMSLPPPKASPEKCDQPRPGL
310 320 330 340 350
>>XP_011526352 (OMIM: 609503) PREDICTED: testicular hapl (423 aa)
initn: 1902 init1: 1875 opt: 1875 Z-score: 1695.9 bits: 322.6 E(85289): 1e-87
Smith-Waterman score: 2309; 91.7% identity (91.7% similar) in 387 aa overlap (1-355:37-423)
10 20 30
pF1KB6 MGDSRRRSLGNQPSSEAAGRSEREQDGDPR
::::::::::::::::::::::::::::::
XP_011 VTDALLLPRPPQTHLGAGRVRPRGLGRDRCMGDSRRRSLGNQPSSEAAGRSEREQDGDPR
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB6 GLQSSVYESRRVTDPERQDLDNAELGPEDPEEELPPEEVAGEEFPETLDPKEALSELERV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GLQSSVYESRRVTDPERQDLDNAELGPEDPEEELPPEEVAGEEFPETLDPKEALSELERV
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB6 LDKDLEEDIPEISRLSISQKLPSTTMTKARKRRRRRRLMELAEPKINWQVLKDRPSVYWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LDKDLEEDIPEISRLSISQKLPSTTMTKARKRRRRRRLMELAEPKINWQVLKDRPSVYWT
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB6 ERFLEDTTLTITVPAVSRRVEELSRPKRFYLEYYNNNRTTPVWPIPRSSLEYRASSRLKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ERFLEDTTLTITVPAVSRRVEELSRPKRFYLEYYNNNRTTPVWPIPRSSLEYRASSRLKE
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB6 LAAPKIRDNFWSMPMSEVSQVSRAAQMAVPSSRILQLSKPKAPATLLEEWDPVPKPKPHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LAAPKIRDNFWSMPMSEVSQVSRAAQMAVPSSRILQLSKPKAPATLLEEWDPVPKPKPHV
250 260 270 280 290 300
280 290
pF1KB6 SDHNRLLHLAR--------------------------------PKAQSDKCVPDRDPRWE
::::::::::: :::::::::::::::::
XP_011 SDHNRLLHLARASSQSQGWSAKKWVALIHLRRSSTQRGIWKEGPKAQSDKCVPDRDPRWE
310 320 330 340 350 360
300 310 320 330 340 350
pF1KB6 VLDVTKKVVASPRIISLAKPKVRKGLNEGYDRRPLASMSLPPPKASPEKCDQPRPGL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VLDVTKKVVASPRIISLAKPKVRKGLNEGYDRRPLASMSLPPPKASPEKCDQPRPGL
370 380 390 400 410 420
>>NP_057669 (OMIM: 609503) testicular haploid expressed (379 aa)
initn: 2369 init1: 1438 opt: 1449 Z-score: 1313.4 bits: 251.6 E(85289): 2e-66
Smith-Waterman score: 2325; 93.7% identity (93.7% similar) in 379 aa overlap (1-355:1-379)
10 20 30 40 50 60
pF1KB6 MGDSRRRSLGNQPSSEAAGRSEREQDGDPRGLQSSVYESRRVTDPERQDLDNAELGPEDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MGDSRRRSLGNQPSSEAAGRSEREQDGDPRGLQSSVYESRRVTDPERQDLDNAELGPEDP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 EEELPPEEVAGEEFPETLDPKEALSELERVLDKDLEEDIPEISRLSISQKLPSTTMTKAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 EEELPPEEVAGEEFPETLDPKEALSELERVLDKDLEEDIPEISRLSISQKLPSTTMTKAR
70 80 90 100 110 120
130 140 150
pF1KB6 KRRRRRRLMELAEPKINWQVLKDR------------------------PSVYWTERFLED
:::::::::::::::::::::::: ::::::::::::
NP_057 KRRRRRRLMELAEPKINWQVLKDRKGRCGKGYAWISPCKMSLHFCLCWPSVYWTERFLED
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB6 TTLTITVPAVSRRVEELSRPKRFYLEYYNNNRTTPVWPIPRSSLEYRASSRLKELAAPKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 TTLTITVPAVSRRVEELSRPKRFYLEYYNNNRTTPVWPIPRSSLEYRASSRLKELAAPKI
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB6 RDNFWSMPMSEVSQVSRAAQMAVPSSRILQLSKPKAPATLLEEWDPVPKPKPHVSDHNRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 RDNFWSMPMSEVSQVSRAAQMAVPSSRILQLSKPKAPATLLEEWDPVPKPKPHVSDHNRL
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB6 LHLARPKAQSDKCVPDRDPRWEVLDVTKKVVASPRIISLAKPKVRKGLNEGYDRRPLASM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 LHLARPKAQSDKCVPDRDPRWEVLDVTKKVVASPRIISLAKPKVRKGLNEGYDRRPLASM
310 320 330 340 350 360
340 350
pF1KB6 SLPPPKASPEKCDQPRPGL
:::::::::::::::::::
NP_057 SLPPPKASPEKCDQPRPGL
370
>>XP_011526353 (OMIM: 609503) PREDICTED: testicular hapl (379 aa)
initn: 1487 init1: 957 opt: 996 Z-score: 906.0 bits: 176.3 E(85289): 1e-43
Smith-Waterman score: 1921; 80.4% identity (80.4% similar) in 387 aa overlap (1-355:37-379)
10 20 30
pF1KB6 MGDSRRRSLGNQPSSEAAGRSEREQDGDPR
::::::::::::::::::::::::::::::
XP_011 VTDALLLPRPPQTHLGAGRVRPRGLGRDRCMGDSRRRSLGNQPSSEAAGRSEREQDGDPR
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB6 GLQSSVYESRRVTDPERQDLDNAELGPEDPEEELPPEEVAGEEFPETLDPKEALSELERV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GLQSSVYESRRVTDPERQDLDNAELGPEDPEEELPPEEVAGEEFPETLDPKEALSELERV
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB6 LDKDLEEDIPEISRLSISQKLPSTTMTKARKRRRRRRLMELAEPKINWQVLKDRPSVYWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LDKDLEEDIPEISRLSISQKLPSTTMTKARKRRRRRRLMELAEPKINWQVLKDR------
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB6 ERFLEDTTLTITVPAVSRRVEELSRPKRFYLEYYNNNRTTPVWPIPRSSLEYRASSRLKE
::::::::::::::::::::::
XP_011 --------------------------------------TTPVWPIPRSSLEYRASSRLKE
190 200
220 230 240 250 260 270
pF1KB6 LAAPKIRDNFWSMPMSEVSQVSRAAQMAVPSSRILQLSKPKAPATLLEEWDPVPKPKPHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LAAPKIRDNFWSMPMSEVSQVSRAAQMAVPSSRILQLSKPKAPATLLEEWDPVPKPKPHV
210 220 230 240 250 260
280 290
pF1KB6 SDHNRLLHLAR--------------------------------PKAQSDKCVPDRDPRWE
::::::::::: :::::::::::::::::
XP_011 SDHNRLLHLARASSQSQGWSAKKWVALIHLRRSSTQRGIWKEGPKAQSDKCVPDRDPRWE
270 280 290 300 310 320
300 310 320 330 340 350
pF1KB6 VLDVTKKVVASPRIISLAKPKVRKGLNEGYDRRPLASMSLPPPKASPEKCDQPRPGL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VLDVTKKVVASPRIISLAKPKVRKGLNEGYDRRPLASMSLPPPKASPEKCDQPRPGL
330 340 350 360 370
>>XP_011526351 (OMIM: 609503) PREDICTED: testicular hapl (447 aa)
initn: 1861 init1: 945 opt: 997 Z-score: 905.9 bits: 176.5 E(85289): 1e-43
Smith-Waterman score: 2073; 85.5% identity (85.5% similar) in 387 aa overlap (1-331:37-423)
10 20 30
pF1KB6 MGDSRRRSLGNQPSSEAAGRSEREQDGDPR
::::::::::::::::::::::::::::::
XP_011 VTDALLLPRPPQTHLGAGRVRPRGLGRDRCMGDSRRRSLGNQPSSEAAGRSEREQDGDPR
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB6 GLQSSVYESRRVTDPERQDLDNAELGPEDPEEELPPEEVAGEEFPETLDPKEALSELERV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GLQSSVYESRRVTDPERQDLDNAELGPEDPEEELPPEEVAGEEFPETLDPKEALSELERV
70 80 90 100 110 120
100 110 120 130 140
pF1KB6 LDKDLEEDIPEISRLSISQKLPSTTMTKARKRRRRRRLMELAEPKINWQVLKDR------
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LDKDLEEDIPEISRLSISQKLPSTTMTKARKRRRRRRLMELAEPKINWQVLKDRKGRCGK
130 140 150 160 170 180
150 160 170 180
pF1KB6 ------------------PSVYWTERFLEDTTLTITVPAVSRRVEELSRPKRFYLEYYNN
::::::::::::::::::::::::::::::::::::::::::
XP_011 GYAWISPCKMSLHFCLCWPSVYWTERFLEDTTLTITVPAVSRRVEELSRPKRFYLEYYNN
190 200 210 220 230 240
190 200 210 220 230 240
pF1KB6 NRTTPVWPIPRSSLEYRASSRLKELAAPKIRDNFWSMPMSEVSQVSRAAQMAVPSSRILQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NRTTPVWPIPRSSLEYRASSRLKELAAPKIRDNFWSMPMSEVSQVSRAAQMAVPSSRILQ
250 260 270 280 290 300
250 260 270 280
pF1KB6 LSKPKAPATLLEEWDPVPKPKPHVSDHNRLLHLAR-------------------------
:::::::::::::::::::::::::::::::::::
XP_011 LSKPKAPATLLEEWDPVPKPKPHVSDHNRLLHLARASSQSQGWSAKKWVALIHLRRSSTQ
310 320 330 340 350 360
290 300 310 320 330
pF1KB6 -------PKAQSDKCVPDRDPRWEVLDVTKKVVASPRIISLAKPKVRKGLNEGYDRRPLA
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RGIWKEGPKAQSDKCVPDRDPRWEVLDVTKKVVASPRIISLAKPKVRKGLNEGYDRRPLA
370 380 390 400 410 420
340 350
pF1KB6 SMSLPPPKASPEKCDQPRPGL
XP_011 SMSLPPPKASPEKCDQPRPGL
430 440
>>XP_011526354 (OMIM: 609503) PREDICTED: testicular hapl (249 aa)
initn: 1214 init1: 945 opt: 945 Z-score: 862.7 bits: 167.6 E(85289): 2.6e-41
Smith-Waterman score: 1170; 88.6% identity (88.6% similar) in 211 aa overlap (1-187:37-247)
10 20 30
pF1KB6 MGDSRRRSLGNQPSSEAAGRSEREQDGDPR
::::::::::::::::::::::::::::::
XP_011 VTDALLLPRPPQTHLGAGRVRPRGLGRDRCMGDSRRRSLGNQPSSEAAGRSEREQDGDPR
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB6 GLQSSVYESRRVTDPERQDLDNAELGPEDPEEELPPEEVAGEEFPETLDPKEALSELERV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GLQSSVYESRRVTDPERQDLDNAELGPEDPEEELPPEEVAGEEFPETLDPKEALSELERV
70 80 90 100 110 120
100 110 120 130 140
pF1KB6 LDKDLEEDIPEISRLSISQKLPSTTMTKARKRRRRRRLMELAEPKINWQVLKDR------
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LDKDLEEDIPEISRLSISQKLPSTTMTKARKRRRRRRLMELAEPKINWQVLKDRKGRCGK
130 140 150 160 170 180
150 160 170 180
pF1KB6 ------------------PSVYWTERFLEDTTLTITVPAVSRRVEELSRPKRFYLEYYNN
::::::::::::::::::::::::::::::::::::::::::
XP_011 GYAWISPCKMSLHFCLCWPSVYWTERFLEDTTLTITVPAVSRRVEELSRPKRFYLEYYNN
190 200 210 220 230 240
190 200 210 220 230 240
pF1KB6 NRTTPVWPIPRSSLEYRASSRLKELAAPKIRDNFWSMPMSEVSQVSRAAQMAVPSSRILQ
:
XP_011 NSV
>>XP_016882536 (OMIM: 145900,605725,614895) PREDICTED: p (1427 aa)
initn: 139 init1: 60 opt: 211 Z-score: 191.9 bits: 46.0 E(85289): 0.00059
Smith-Waterman score: 211; 26.0% identity (51.9% similar) in 312 aa overlap (28-320:368-662)
10 20 30 40 50
pF1KB6 MGDSRRRSLGNQPSSEAAGRSEREQDGDPRGLQSSVYESR-RVTDPERQDLDNAELG
.:: : ::. .. . .: . :
XP_016 VAEAKVAKVSPEARVKGPRLRMPTFGLSLLEPRPAAPEVVESKLKLPTIKMPSLGIGVSG
340 350 360 370 380 390
60 70 80 90 100
pF1KB6 PE-----DPEEELPPE-EVAGEEFPETLDPKEALSELERVLDKDLEEDIPEISRLSISQ-
:: :: .:: :: . ::. :. : :.: : : : .:.. .... .
XP_016 PEVKVPKGPEVKLPKAPEVKLPKVPEAALPEVRLPEVE--LPKVSEMKLPKVPEMAVPEV
400 410 420 430 440 450
110 120 130 140 150 160
pF1KB6 KLPSTTMTKARKRRRRRRLMELAEPKINWQVLKDRPSVYWTERFLEDTTLTITVPAVSRR
.:: . . :. . . . . :.: :.. : . . .: : . ..:: : :
XP_016 RLPEVELPKVSEMKLPK-VPEMAVPEVR---LPEVQLLKVSEMKLPKVP-EMAVPEV--R
460 470 480 490 500
170 180 190 200 210 220
pF1KB6 VEELSRPKRFYLEYYNNNRTT-PVWPIPRSSLEYRASSRLKELAAPKIRD-NFWSMPMSE
. :.. :: .. . .... : .:. .: .. :. ::. . .. : . :
XP_016 LPEVQLPKVSEMKLPEVSEVAVPEVRLPEVQLPKVPEMKVPEMKLPKVPEMKLPEMKLPE
510 520 530 540 550 560
230 240 250 260 270 280
pF1KB6 VSQVSRAAQMAVPSSRILQLSKPKAPATLLEEWD-P---VPK-PKPHVSDHNRLLHLARP
: :. .. .::::. .. ... ::.: : : : .:: :. : : .:: :
XP_016 V-QLPKVPEMAVPDVHLPEVQLPKVPEMKLPEMKLPEVKLPKVPEMAVPD----VHL--P
570 580 590 600 610 620
290 300 310 320 330
pF1KB6 KAQSDKCVPD----RDPRWEVLDVTKKVVASPRIISLAKPKVRKGLNEGYDRRPLASMSL
..: : ::. . :. : .: : :.. . :::
XP_016 EVQLPK-VPEMKLPKMPEMAVPEVRLPEVQLPKVSEMKLPKVPEMAVPDVHLPEVQLPKV
630 640 650 660 670 680
340 350
pF1KB6 PPPKASPEKCDQPRPGL
XP_016 CEMKVPDMKLPEIKLPKVPEMAVPDVHLPEVQLPKVSEIRLPEMQVPKVPDVHLPKAPEV
690 700 710 720 730 740
>>XP_016882535 (OMIM: 145900,605725,614895) PREDICTED: p (1427 aa)
initn: 139 init1: 60 opt: 211 Z-score: 191.9 bits: 46.0 E(85289): 0.00059
Smith-Waterman score: 211; 26.0% identity (51.9% similar) in 312 aa overlap (28-320:368-662)
10 20 30 40 50
pF1KB6 MGDSRRRSLGNQPSSEAAGRSEREQDGDPRGLQSSVYESR-RVTDPERQDLDNAELG
.:: : ::. .. . .: . :
XP_016 VAEAKVAKVSPEARVKGPRLRMPTFGLSLLEPRPAAPEVVESKLKLPTIKMPSLGIGVSG
340 350 360 370 380 390
60 70 80 90 100
pF1KB6 PE-----DPEEELPPE-EVAGEEFPETLDPKEALSELERVLDKDLEEDIPEISRLSISQ-
:: :: .:: :: . ::. :. : :.: : : : .:.. .... .
XP_016 PEVKVPKGPEVKLPKAPEVKLPKVPEAALPEVRLPEVE--LPKVSEMKLPKVPEMAVPEV
400 410 420 430 440 450
110 120 130 140 150 160
pF1KB6 KLPSTTMTKARKRRRRRRLMELAEPKINWQVLKDRPSVYWTERFLEDTTLTITVPAVSRR
.:: . . :. . . . . :.: :.. : . . .: : . ..:: : :
XP_016 RLPEVELPKVSEMKLPK-VPEMAVPEVR---LPEVQLLKVSEMKLPKVP-EMAVPEV--R
460 470 480 490 500
170 180 190 200 210 220
pF1KB6 VEELSRPKRFYLEYYNNNRTT-PVWPIPRSSLEYRASSRLKELAAPKIRD-NFWSMPMSE
. :.. :: .. . .... : .:. .: .. :. ::. . .. : . :
XP_016 LPEVQLPKVSEMKLPEVSEVAVPEVRLPEVQLPKVPEMKVPEMKLPKVPEMKLPEMKLPE
510 520 530 540 550 560
230 240 250 260 270 280
pF1KB6 VSQVSRAAQMAVPSSRILQLSKPKAPATLLEEWD-P---VPK-PKPHVSDHNRLLHLARP
: :. .. .::::. .. ... ::.: : : : .:: :. : : .:: :
XP_016 V-QLPKVPEMAVPDVHLPEVQLPKVPEMKLPEMKLPEVKLPKVPEMAVPD----VHL--P
570 580 590 600 610 620
290 300 310 320 330
pF1KB6 KAQSDKCVPD----RDPRWEVLDVTKKVVASPRIISLAKPKVRKGLNEGYDRRPLASMSL
..: : ::. . :. : .: : :.. . :::
XP_016 EVQLPK-VPEMKLPKMPEMAVPEVRLPEVQLPKVSEMKLPKVPEMAVPDVHLPEVQLPKV
630 640 650 660 670 680
340 350
pF1KB6 PPPKASPEKCDQPRPGL
XP_016 CEMKVPDMKLPEIKLPKVPEMAVPDVHLPEVQLPKVSEIRLPEMQVPKVPDVHLPKAPEV
690 700 710 720 730 740
>>NP_870998 (OMIM: 145900,605725,614895) periaxin isofor (1461 aa)
initn: 139 init1: 60 opt: 211 Z-score: 191.8 bits: 46.1 E(85289): 0.00061
Smith-Waterman score: 211; 26.0% identity (51.9% similar) in 312 aa overlap (28-320:402-696)
10 20 30 40 50
pF1KB6 MGDSRRRSLGNQPSSEAAGRSEREQDGDPRGLQSSVYESR-RVTDPERQDLDNAELG
.:: : ::. .. . .: . :
NP_870 VAEAKVAKVSPEARVKGPRLRMPTFGLSLLEPRPAAPEVVESKLKLPTIKMPSLGIGVSG
380 390 400 410 420 430
60 70 80 90 100
pF1KB6 PE-----DPEEELPPE-EVAGEEFPETLDPKEALSELERVLDKDLEEDIPEISRLSISQ-
:: :: .:: :: . ::. :. : :.: : : : .:.. .... .
NP_870 PEVKVPKGPEVKLPKAPEVKLPKVPEAALPEVRLPEVE--LPKVSEMKLPKVPEMAVPEV
440 450 460 470 480
110 120 130 140 150 160
pF1KB6 KLPSTTMTKARKRRRRRRLMELAEPKINWQVLKDRPSVYWTERFLEDTTLTITVPAVSRR
.:: . . :. . . . . :.: :.. : . . .: : . ..:: : :
NP_870 RLPEVELPKVSEMKLPK-VPEMAVPEVR---LPEVQLLKVSEMKLPKVP-EMAVPEV--R
490 500 510 520 530 540
170 180 190 200 210 220
pF1KB6 VEELSRPKRFYLEYYNNNRTT-PVWPIPRSSLEYRASSRLKELAAPKIRD-NFWSMPMSE
. :.. :: .. . .... : .:. .: .. :. ::. . .. : . :
NP_870 LPEVQLPKVSEMKLPEVSEVAVPEVRLPEVQLPKVPEMKVPEMKLPKVPEMKLPEMKLPE
550 560 570 580 590 600
230 240 250 260 270 280
pF1KB6 VSQVSRAAQMAVPSSRILQLSKPKAPATLLEEWD-P---VPK-PKPHVSDHNRLLHLARP
: :. .. .::::. .. ... ::.: : : : .:: :. : : .:: :
NP_870 V-QLPKVPEMAVPDVHLPEVQLPKVPEMKLPEMKLPEVKLPKVPEMAVPD----VHL--P
610 620 630 640 650
290 300 310 320 330
pF1KB6 KAQSDKCVPD----RDPRWEVLDVTKKVVASPRIISLAKPKVRKGLNEGYDRRPLASMSL
..: : ::. . :. : .: : :.. . :::
NP_870 EVQLPK-VPEMKLPKMPEMAVPEVRLPEVQLPKVSEMKLPKVPEMAVPDVHLPEVQLPKV
660 670 680 690 700 710
340 350
pF1KB6 PPPKASPEKCDQPRPGL
NP_870 CEMKVPDMKLPEIKLPKVPEMAVPDVHLPEVQLPKVSEIRLPEMQVPKVPDVHLPKAPEV
720 730 740 750 760 770
>>XP_011525473 (OMIM: 145900,605725,614895) PREDICTED: p (1461 aa)
initn: 139 init1: 60 opt: 211 Z-score: 191.8 bits: 46.1 E(85289): 0.00061
Smith-Waterman score: 211; 26.0% identity (51.9% similar) in 312 aa overlap (28-320:402-696)
10 20 30 40 50
pF1KB6 MGDSRRRSLGNQPSSEAAGRSEREQDGDPRGLQSSVYESR-RVTDPERQDLDNAELG
.:: : ::. .. . .: . :
XP_011 VAEAKVAKVSPEARVKGPRLRMPTFGLSLLEPRPAAPEVVESKLKLPTIKMPSLGIGVSG
380 390 400 410 420 430
60 70 80 90 100
pF1KB6 PE-----DPEEELPPE-EVAGEEFPETLDPKEALSELERVLDKDLEEDIPEISRLSISQ-
:: :: .:: :: . ::. :. : :.: : : : .:.. .... .
XP_011 PEVKVPKGPEVKLPKAPEVKLPKVPEAALPEVRLPEVE--LPKVSEMKLPKVPEMAVPEV
440 450 460 470 480
110 120 130 140 150 160
pF1KB6 KLPSTTMTKARKRRRRRRLMELAEPKINWQVLKDRPSVYWTERFLEDTTLTITVPAVSRR
.:: . . :. . . . . :.: :.. : . . .: : . ..:: : :
XP_011 RLPEVELPKVSEMKLPK-VPEMAVPEVR---LPEVQLLKVSEMKLPKVP-EMAVPEV--R
490 500 510 520 530 540
170 180 190 200 210 220
pF1KB6 VEELSRPKRFYLEYYNNNRTT-PVWPIPRSSLEYRASSRLKELAAPKIRD-NFWSMPMSE
. :.. :: .. . .... : .:. .: .. :. ::. . .. : . :
XP_011 LPEVQLPKVSEMKLPEVSEVAVPEVRLPEVQLPKVPEMKVPEMKLPKVPEMKLPEMKLPE
550 560 570 580 590 600
230 240 250 260 270 280
pF1KB6 VSQVSRAAQMAVPSSRILQLSKPKAPATLLEEWD-P---VPK-PKPHVSDHNRLLHLARP
: :. .. .::::. .. ... ::.: : : : .:: :. : : .:: :
XP_011 V-QLPKVPEMAVPDVHLPEVQLPKVPEMKLPEMKLPEVKLPKVPEMAVPD----VHL--P
610 620 630 640 650
290 300 310 320 330
pF1KB6 KAQSDKCVPD----RDPRWEVLDVTKKVVASPRIISLAKPKVRKGLNEGYDRRPLASMSL
..: : ::. . :. : .: : :.. . :::
XP_011 EVQLPK-VPEMKLPKMPEMAVPEVRLPEVQLPKVSEMKLPKVPEMAVPDVHLPEVQLPKV
660 670 680 690 700 710
340 350
pF1KB6 PPPKASPEKCDQPRPGL
XP_011 CEMKVPDMKLPEIKLPKVPEMAVPDVHLPEVQLPKVSEIRLPEMQVPKVPDVHLPKAPEV
720 730 740 750 760 770
355 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 11:31:11 2016 done: Sat Nov 5 11:31:12 2016
Total Scan time: 9.110 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]