FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6587, 355 aa
  1>>>pF1KB6587 355 - 355 aa - 355 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7863+/-0.000723; mu= 11.3737+/- 0.044
 mean_var=120.3783+/-23.476, 0's: 0 Z-trim(113.4): 13  B-trim: 0 in 0/53
 Lambda= 0.116896
 statistics sampled from 14071 (14081) to 14071 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.433), width:  16
 Scan time:  3.240

The best scores are:                                      opt bits E(32554)
CCDS12026.1 THEG gene_id:51298|Hs108|chr19         ( 355) 2383 412.2 3.3e-115
CCDS12025.1 THEG gene_id:51298|Hs108|chr19         ( 379) 1449 254.7 9.1e-68


>>CCDS12026.1 THEG gene_id:51298|Hs108|chr19              (355 aa)
 initn: 2383 init1: 2383 opt: 2383  Z-score: 2181.8  bits: 412.2 E(32554): 3.3e-115
Smith-Waterman score: 2383; 100.0% identity (100.0% similar) in 355 aa overlap (1-355:1-355)

               10        20        30        40        50        60
pF1KB6 MGDSRRRSLGNQPSSEAAGRSEREQDGDPRGLQSSVYESRRVTDPERQDLDNAELGPEDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MGDSRRRSLGNQPSSEAAGRSEREQDGDPRGLQSSVYESRRVTDPERQDLDNAELGPEDP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EEELPPEEVAGEEFPETLDPKEALSELERVLDKDLEEDIPEISRLSISQKLPSTTMTKAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EEELPPEEVAGEEFPETLDPKEALSELERVLDKDLEEDIPEISRLSISQKLPSTTMTKAR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KRRRRRRLMELAEPKINWQVLKDRPSVYWTERFLEDTTLTITVPAVSRRVEELSRPKRFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KRRRRRRLMELAEPKINWQVLKDRPSVYWTERFLEDTTLTITVPAVSRRVEELSRPKRFY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 LEYYNNNRTTPVWPIPRSSLEYRASSRLKELAAPKIRDNFWSMPMSEVSQVSRAAQMAVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LEYYNNNRTTPVWPIPRSSLEYRASSRLKELAAPKIRDNFWSMPMSEVSQVSRAAQMAVP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 SSRILQLSKPKAPATLLEEWDPVPKPKPHVSDHNRLLHLARPKAQSDKCVPDRDPRWEVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SSRILQLSKPKAPATLLEEWDPVPKPKPHVSDHNRLLHLARPKAQSDKCVPDRDPRWEVL
              250       260       270       280       290       300

              310       320       330       340       350     
pF1KB6 DVTKKVVASPRIISLAKPKVRKGLNEGYDRRPLASMSLPPPKASPEKCDQPRPGL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DVTKKVVASPRIISLAKPKVRKGLNEGYDRRPLASMSLPPPKASPEKCDQPRPGL
              310       320       330       340       350     

>>CCDS12025.1 THEG gene_id:51298|Hs108|chr19              (379 aa)
 initn: 2369 init1: 1438 opt: 1449  Z-score: 1330.1  bits: 254.7 E(32554): 9.1e-68
Smith-Waterman score: 2325; 93.7% identity (93.7% similar) in 379 aa overlap (1-355:1-379)

               10        20        30        40        50        60
pF1KB6 MGDSRRRSLGNQPSSEAAGRSEREQDGDPRGLQSSVYESRRVTDPERQDLDNAELGPEDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MGDSRRRSLGNQPSSEAAGRSEREQDGDPRGLQSSVYESRRVTDPERQDLDNAELGPEDP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EEELPPEEVAGEEFPETLDPKEALSELERVLDKDLEEDIPEISRLSISQKLPSTTMTKAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EEELPPEEVAGEEFPETLDPKEALSELERVLDKDLEEDIPEISRLSISQKLPSTTMTKAR
               70        80        90       100       110       120

              130       140                               150      
pF1KB6 KRRRRRRLMELAEPKINWQVLKDR------------------------PSVYWTERFLED
       ::::::::::::::::::::::::                        ::::::::::::
CCDS12 KRRRRRRLMELAEPKINWQVLKDRKGRCGKGYAWISPCKMSLHFCLCWPSVYWTERFLED
              130       140       150       160       170       180

        160       170       180       190       200       210      
pF1KB6 TTLTITVPAVSRRVEELSRPKRFYLEYYNNNRTTPVWPIPRSSLEYRASSRLKELAAPKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TTLTITVPAVSRRVEELSRPKRFYLEYYNNNRTTPVWPIPRSSLEYRASSRLKELAAPKI
              190       200       210       220       230       240

        220       230       240       250       260       270      
pF1KB6 RDNFWSMPMSEVSQVSRAAQMAVPSSRILQLSKPKAPATLLEEWDPVPKPKPHVSDHNRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RDNFWSMPMSEVSQVSRAAQMAVPSSRILQLSKPKAPATLLEEWDPVPKPKPHVSDHNRL
              250       260       270       280       290       300

        280       290       300       310       320       330      
pF1KB6 LHLARPKAQSDKCVPDRDPRWEVLDVTKKVVASPRIISLAKPKVRKGLNEGYDRRPLASM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LHLARPKAQSDKCVPDRDPRWEVLDVTKKVVASPRIISLAKPKVRKGLNEGYDRRPLASM
              310       320       330       340       350       360

        340       350     
pF1KB6 SLPPPKASPEKCDQPRPGL
       :::::::::::::::::::
CCDS12 SLPPPKASPEKCDQPRPGL
              370         




355 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:31:10 2016 done: Sat Nov  5 11:31:11 2016
 Total Scan time:  3.240 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]