FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6570, 400 aa
  1>>>pF1KB6570 400 - 400 aa - 400 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8977+/-0.000842; mu= 13.9183+/- 0.051
 mean_var=72.4159+/-14.139, 0's: 0 Z-trim(107.5): 9  B-trim: 0 in 0/50
 Lambda= 0.150715
 statistics sampled from 9613 (9616) to 9613 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.295), width:  16
 Scan time:  2.970

The best scores are:                                      opt bits E(32554)
CCDS10968.1 MVD gene_id:4597|Hs108|chr16           ( 400) 2677 591.2 5.4e-169


>>CCDS10968.1 MVD gene_id:4597|Hs108|chr16                (400 aa)
 initn: 2677 init1: 2677 opt: 2677  Z-score: 3147.4  bits: 591.2 E(32554): 5.4e-169
Smith-Waterman score: 2677; 100.0% identity (100.0% similar) in 400 aa overlap (1-400:1-400)

               10        20        30        40        50        60
pF1KB6 MASEKPLAAVTCTAPVNIAVIKYWGKRDEELVLPINSSLSVTLHQDQLKTTTTAVISKDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MASEKPLAAVTCTAPVNIAVIKYWGKRDEELVLPINSSLSVTLHQDQLKTTTTAVISKDF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 TEDRIWLNGREEDVGQPRLQACLREIRCLARKRRNSRDGDPLPSSLSCKVHVASVNNFPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TEDRIWLNGREEDVGQPRLQACLREIRCLARKRRNSRDGDPLPSSLSCKVHVASVNNFPT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 AAGLASSAAGYACLAYTLARVYGVESDLSEVARRGSGSACRSLYGGFVEWQMGEQADGKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AAGLASSAAGYACLAYTLARVYGVESDLSEVARRGSGSACRSLYGGFVEWQMGEQADGKD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 SIARQVAPESHWPELRVLILVVSAEKKLTGSTVGMRASVETSPLLRFRAESVVPARMAEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SIARQVAPESHWPELRVLILVVSAEKKLTGSTVGMRASVETSPLLRFRAESVVPARMAEM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 ARCIRERDFPSFAQLTMKDSNQFHATCLDTFPPISYLNAISWRIIHLVHRFNAHHGDTKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ARCIRERDFPSFAQLTMKDSNQFHATCLDTFPPISYLNAISWRIIHLVHRFNAHHGDTKV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 AYTFDAGPNAVIFTLDDTVAEFVAAVWHGFPPGSNGDTFLKGLQVRPAPLSAELQAALAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AYTFDAGPNAVIFTLDDTVAEFVAAVWHGFPPGSNGDTFLKGLQVRPAPLSAELQAALAM
              310       320       330       340       350       360

              370       380       390       400
pF1KB6 EPTPGGVKYIIVTQVGPGPQILDDPCAHLLGPDGLPKPAA
       ::::::::::::::::::::::::::::::::::::::::
CCDS10 EPTPGGVKYIIVTQVGPGPQILDDPCAHLLGPDGLPKPAA
              370       380       390       400




400 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:29:20 2016 done: Sat Nov  5 11:29:20 2016
 Total Scan time:  2.970 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]