FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6545, 365 aa
  1>>>pF1KB6545 365 - 365 aa - 365 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2226+/-0.000938; mu= 12.6448+/- 0.056
 mean_var=101.1428+/-20.307, 0's: 0 Z-trim(107.7): 56  B-trim: 4 in 1/51
 Lambda= 0.127528
 statistics sampled from 9705 (9752) to 9705 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.3), width:  16
 Scan time:  2.720

The best scores are:                                      opt bits E(32554)
CCDS1210.1 CD244 gene_id:51744|Hs108|chr1          ( 365) 2421 455.9 2.4e-128
CCDS53399.1 CD244 gene_id:51744|Hs108|chr1         ( 370) 2401 452.3 3.1e-127
CCDS53398.1 CD244 gene_id:51744|Hs108|chr1         ( 273)  972 189.3 3.5e-48


>>CCDS1210.1 CD244 gene_id:51744|Hs108|chr1               (365 aa)
 initn: 2421 init1: 2421 opt: 2421  Z-score: 2417.6  bits: 455.9 E(32554): 2.4e-128
Smith-Waterman score: 2421; 100.0% identity (100.0% similar) in 365 aa overlap (1-365:1-365)

               10        20        30        40        50        60
pF1KB6 MLGQVVTLILLLLLKVYQGKGCQGSADHVVSISGVPLQLQPNSIQTKVDSIAWKKLLPSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MLGQVVTLILLLLLKVYQGKGCQGSADHVVSISGVPLQLQPNSIQTKVDSIAWKKLLPSQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 NGFHHILKWENGSLPSNTSNDRFSFIVKNLSLLIKAAQQQDSGLYCLEVTSISGKVQTAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 NGFHHILKWENGSLPSNTSNDRFSFIVKNLSLLIKAAQQQDSGLYCLEVTSISGKVQTAT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 FQVFVFDKVEKPRLQGQGKILDRGRCQVALSCLVSRDGNVSYAWYRGSKLIQTAGNLTYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FQVFVFDKVEKPRLQGQGKILDRGRCQVALSCLVSRDGNVSYAWYRGSKLIQTAGNLTYL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 DEEVDINGTHTYTCNVSNPVSWESHTLNLTQDCQNAHQEFRFWPFLVIIVILSALFLGTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DEEVDINGTHTYTCNVSNPVSWESHTLNLTQDCQNAHQEFRFWPFLVIIVILSALFLGTL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 ACFCVWRRKRKEKQSETSPKEFLTIYEDVKDLKTRRNHEQEQTFPGGGSTIYSMIQSQSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ACFCVWRRKRKEKQSETSPKEFLTIYEDVKDLKTRRNHEQEQTFPGGGSTIYSMIQSQSS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 APTSQEPAYTLYSLIQPSRKSGSRKRNHSPSFNSTIYEVIGKSQPKAQNPARLSRKELEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 APTSQEPAYTLYSLIQPSRKSGSRKRNHSPSFNSTIYEVIGKSQPKAQNPARLSRKELEN
              310       320       330       340       350       360

            
pF1KB6 FDVYS
       :::::
CCDS12 FDVYS
            

>>CCDS53399.1 CD244 gene_id:51744|Hs108|chr1              (370 aa)
 initn: 1616 init1: 1616 opt: 2401  Z-score: 2397.6  bits: 452.3 E(32554): 3.1e-127
Smith-Waterman score: 2401; 98.6% identity (98.6% similar) in 370 aa overlap (1-365:1-370)

               10        20        30        40        50        60
pF1KB6 MLGQVVTLILLLLLKVYQGKGCQGSADHVVSISGVPLQLQPNSIQTKVDSIAWKKLLPSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MLGQVVTLILLLLLKVYQGKGCQGSADHVVSISGVPLQLQPNSIQTKVDSIAWKKLLPSQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 NGFHHILKWENGSLPSNTSNDRFSFIVKNLSLLIKAAQQQDSGLYCLEVTSISGKVQTAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 NGFHHILKWENGSLPSNTSNDRFSFIVKNLSLLIKAAQQQDSGLYCLEVTSISGKVQTAT
               70        80        90       100       110       120

                   130       140       150       160       170     
pF1KB6 FQVFVF-----DKVEKPRLQGQGKILDRGRCQVALSCLVSRDGNVSYAWYRGSKLIQTAG
       ::::::     :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 FQVFVFESLLPDKVEKPRLQGQGKILDRGRCQVALSCLVSRDGNVSYAWYRGSKLIQTAG
              130       140       150       160       170       180

         180       190       200       210       220       230     
pF1KB6 NLTYLDEEVDINGTHTYTCNVSNPVSWESHTLNLTQDCQNAHQEFRFWPFLVIIVILSAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 NLTYLDEEVDINGTHTYTCNVSNPVSWESHTLNLTQDCQNAHQEFRFWPFLVIIVILSAL
              190       200       210       220       230       240

         240       250       260       270       280       290     
pF1KB6 FLGTLACFCVWRRKRKEKQSETSPKEFLTIYEDVKDLKTRRNHEQEQTFPGGGSTIYSMI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 FLGTLACFCVWRRKRKEKQSETSPKEFLTIYEDVKDLKTRRNHEQEQTFPGGGSTIYSMI
              250       260       270       280       290       300

         300       310       320       330       340       350     
pF1KB6 QSQSSAPTSQEPAYTLYSLIQPSRKSGSRKRNHSPSFNSTIYEVIGKSQPKAQNPARLSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 QSQSSAPTSQEPAYTLYSLIQPSRKSGSRKRNHSPSFNSTIYEVIGKSQPKAQNPARLSR
              310       320       330       340       350       360

         360     
pF1KB6 KELENFDVYS
       ::::::::::
CCDS53 KELENFDVYS
              370

>>CCDS53398.1 CD244 gene_id:51744|Hs108|chr1              (273 aa)
 initn: 1799 init1: 972 opt: 972  Z-score: 978.6  bits: 189.3 E(32554): 3.5e-48
Smith-Waterman score: 1593; 74.8% identity (74.8% similar) in 365 aa overlap (1-365:1-273)

               10        20        30        40        50        60
pF1KB6 MLGQVVTLILLLLLKVYQGKGCQGSADHVVSISGVPLQLQPNSIQTKVDSIAWKKLLPSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MLGQVVTLILLLLLKVYQGKGCQGSADHVVSISGVPLQLQPNSIQTKVDSIAWKKLLPSQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 NGFHHILKWENGSLPSNTSNDRFSFIVKNLSLLIKAAQQQDSGLYCLEVTSISGKVQTAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 NGFHHILKWENGSLPSNTSNDRFSFIVKNLSLLIKAAQQQDSGLYCLEVTSISGKVQTAT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 FQVFVFDKVEKPRLQGQGKILDRGRCQVALSCLVSRDGNVSYAWYRGSKLIQTAGNLTYL
       ::::::                                                      
CCDS53 FQVFVF------------------------------------------------------
                                                                   

              190       200       210       220       230       240
pF1KB6 DEEVDINGTHTYTCNVSNPVSWESHTLNLTQDCQNAHQEFRFWPFLVIIVILSALFLGTL
                                             ::::::::::::::::::::::
CCDS53 --------------------------------------EFRFWPFLVIIVILSALFLGTL
                                              130       140        

              250       260       270       280       290       300
pF1KB6 ACFCVWRRKRKEKQSETSPKEFLTIYEDVKDLKTRRNHEQEQTFPGGGSTIYSMIQSQSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ACFCVWRRKRKEKQSETSPKEFLTIYEDVKDLKTRRNHEQEQTFPGGGSTIYSMIQSQSS
      150       160       170       180       190       200        

              310       320       330       340       350       360
pF1KB6 APTSQEPAYTLYSLIQPSRKSGSRKRNHSPSFNSTIYEVIGKSQPKAQNPARLSRKELEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 APTSQEPAYTLYSLIQPSRKSGSRKRNHSPSFNSTIYEVIGKSQPKAQNPARLSRKELEN
      210       220       230       240       250       260        

            
pF1KB6 FDVYS
       :::::
CCDS53 FDVYS
      270   




365 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:55:06 2016 done: Sat Nov  5 18:55:07 2016
 Total Scan time:  2.720 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]