Result of FASTA (omim) for
pF1KB6541
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6541, 361 aa
1>>>pF1KB6541 361 - 361 aa - 361 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.6128+/-0.000417; mu= -15.6994+/- 0.026
mean_var=516.1102+/-109.346, 0's: 0 Z-trim(124.3): 193 B-trim: 690 in 1/59
Lambda= 0.056455
statistics sampled from 45574 (45824) to 45574 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.816), E-opt: 0.2 (0.537), width: 16
Scan time: 10.080
The best scores are: opt bits E(85289)
NP_036578 (OMIM: 607389) single-stranded DNA-bindi ( 361) 2635 228.6 1.7e-59
NP_001243661 (OMIM: 607389) single-stranded DNA-bi ( 369) 2609 226.5 7.7e-59
XP_016864794 (OMIM: 607389) PREDICTED: single-stra ( 357) 2504 217.9 2.8e-56
XP_016864793 (OMIM: 607389) PREDICTED: single-stra ( 365) 2478 215.8 1.2e-55
XP_016864795 (OMIM: 607389) PREDICTED: single-stra ( 328) 2364 206.5 7.2e-53
NP_001332815 (OMIM: 607389) single-stranded DNA-bi ( 336) 2338 204.3 3.2e-52
NP_001009955 (OMIM: 607390) single-stranded DNA-bi ( 361) 2233 195.8 1.3e-49
NP_001009998 (OMIM: 607391) single-stranded DNA-bi ( 363) 1966 174.1 4.4e-43
XP_006722731 (OMIM: 607391) PREDICTED: single-stra ( 413) 1918 170.2 7.3e-42
XP_016881925 (OMIM: 607391) PREDICTED: single-stra ( 496) 1918 170.3 8.3e-42
XP_016881926 (OMIM: 607391) PREDICTED: single-stra ( 385) 1878 166.9 6.6e-41
NP_060540 (OMIM: 607390) single-stranded DNA-bindi ( 368) 1851 164.7 2.9e-40
XP_016881924 (OMIM: 607391) PREDICTED: single-stra ( 507) 1845 164.4 5.2e-40
XP_016864797 (OMIM: 607389) PREDICTED: single-stra ( 257) 1822 162.2 1.2e-39
XP_016864798 (OMIM: 607389) PREDICTED: single-stra ( 257) 1822 162.2 1.2e-39
XP_016864799 (OMIM: 607389) PREDICTED: single-stra ( 257) 1822 162.2 1.2e-39
XP_016881923 (OMIM: 607391) PREDICTED: single-stra ( 518) 1830 163.1 1.2e-39
XP_016864796 (OMIM: 607389) PREDICTED: single-stra ( 327) 1752 156.6 7.2e-38
NP_001243664 (OMIM: 607389) single-stranded DNA-bi ( 331) 1752 156.6 7.3e-38
NP_001243663 (OMIM: 607389) single-stranded DNA-bi ( 339) 1726 154.5 3.2e-37
NP_001243662 (OMIM: 607389) single-stranded DNA-bi ( 341) 1620 145.9 1.3e-34
XP_016856388 (OMIM: 607390) PREDICTED: single-stra ( 251) 1506 136.5 6.5e-32
NP_001243665 (OMIM: 607389) single-stranded DNA-bi ( 298) 1481 134.5 3e-31
XP_016856387 (OMIM: 607390) PREDICTED: single-stra ( 278) 1440 131.1 2.9e-30
XP_016856386 (OMIM: 607390) PREDICTED: single-stra ( 278) 1440 131.1 2.9e-30
XP_005259847 (OMIM: 607391) PREDICTED: single-stra ( 407) 1255 116.2 1.3e-25
XP_006722728 (OMIM: 607391) PREDICTED: single-stra ( 457) 1207 112.4 2.1e-24
XP_016881921 (OMIM: 607391) PREDICTED: single-stra ( 529) 1207 112.4 2.4e-24
XP_016881920 (OMIM: 607391) PREDICTED: single-stra ( 540) 1207 112.4 2.4e-24
NP_663768 (OMIM: 607390) single-stranded DNA-bindi ( 388) 993 94.9 3.3e-19
XP_006710608 (OMIM: 607390) PREDICTED: single-stra ( 341) 929 89.6 1.1e-17
NP_116016 (OMIM: 607391) single-stranded DNA-bindi ( 385) 921 89.0 1.9e-17
XP_006722729 (OMIM: 607391) PREDICTED: single-stra ( 435) 921 89.0 2.1e-17
XP_016881922 (OMIM: 607391) PREDICTED: single-stra ( 518) 921 89.1 2.4e-17
>>NP_036578 (OMIM: 607389) single-stranded DNA-binding p (361 aa)
initn: 2635 init1: 2635 opt: 2635 Z-score: 1188.9 bits: 228.6 E(85289): 1.7e-59
Smith-Waterman score: 2635; 100.0% identity (100.0% similar) in 361 aa overlap (1-361:1-361)
10 20 30 40 50 60
pF1KB6 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 PRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 PRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 VGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 VGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 ESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQSESYSPSMTMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 ESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQSESYSPSMTMS
310 320 330 340 350 360
pF1KB6 V
:
NP_036 V
>>NP_001243661 (OMIM: 607389) single-stranded DNA-bindin (369 aa)
initn: 1435 init1: 1386 opt: 2609 Z-score: 1177.4 bits: 226.5 E(85289): 7.7e-59
Smith-Waterman score: 2609; 97.8% identity (97.8% similar) in 369 aa overlap (1-361:1-369)
10 20 30 40 50 60
pF1KB6 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
130 140 150 160 170 180
190 200 210 220 230
pF1KB6 PRGMVPLGPQ--------NYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPY
:::::::::: ::::::::::::::::::::::::::::::::::::::::::
NP_001 PRGMVPLGPQSDPWLSLQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPY
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB6 SSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDG
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB6 PMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQSES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQSES
310 320 330 340 350 360
360
pF1KB6 YSPSMTMSV
:::::::::
NP_001 YSPSMTMSV
>>XP_016864794 (OMIM: 607389) PREDICTED: single-stranded (357 aa)
initn: 2504 init1: 2504 opt: 2504 Z-score: 1131.3 bits: 217.9 E(85289): 2.8e-56
Smith-Waterman score: 2504; 99.7% identity (100.0% similar) in 341 aa overlap (21-361:17-357)
10 20 30 40 50 60
pF1KB6 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
.:::::::::::::::::::::::::::::::::::::::
XP_016 MLVIPSALMYSFVLYWRLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB6 PRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNY
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB6 VGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGM
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB6 ESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQSESYSPSMTMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQSESYSPSMTMS
300 310 320 330 340 350
pF1KB6 V
:
XP_016 V
>>XP_016864793 (OMIM: 607389) PREDICTED: single-stranded (365 aa)
initn: 1304 init1: 1258 opt: 2478 Z-score: 1119.8 bits: 215.8 E(85289): 1.2e-55
Smith-Waterman score: 2478; 97.4% identity (97.7% similar) in 349 aa overlap (21-361:17-365)
10 20 30 40 50 60
pF1KB6 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
.:::::::::::::::::::::::::::::::::::::::
XP_016 MLVIPSALMYSFVLYWRLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
120 130 140 150 160 170
190 200 210 220 230
pF1KB6 PRGMVPLGPQ--------NYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPY
:::::::::: ::::::::::::::::::::::::::::::::::::::::::
XP_016 PRGMVPLGPQSDPWLSLQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPY
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB6 SSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDG
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB6 PMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQSES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQSES
300 310 320 330 340 350
360
pF1KB6 YSPSMTMSV
:::::::::
XP_016 YSPSMTMSV
360
>>XP_016864795 (OMIM: 607389) PREDICTED: single-stranded (328 aa)
initn: 2468 init1: 2359 opt: 2364 Z-score: 1070.2 bits: 206.5 E(85289): 7.2e-53
Smith-Waterman score: 2364; 98.5% identity (99.4% similar) in 328 aa overlap (1-328:1-327)
10 20 30 40 50 60
pF1KB6 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 PRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 VGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 ESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQSESYSPSMTMS
::::::::::::::::::: ::. :..:
XP_016 ESHHMNGSLGSGDMDSISKYSPS-MTMSV
310 320
>>NP_001332815 (OMIM: 607389) single-stranded DNA-bindin (336 aa)
initn: 2402 init1: 1386 opt: 2338 Z-score: 1058.6 bits: 204.3 E(85289): 3.2e-52
Smith-Waterman score: 2338; 96.1% identity (97.0% similar) in 336 aa overlap (1-328:1-335)
10 20 30 40 50 60
pF1KB6 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
130 140 150 160 170 180
190 200 210 220 230
pF1KB6 PRGMVPLGPQ--------NYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPY
:::::::::: ::::::::::::::::::::::::::::::::::::::::::
NP_001 PRGMVPLGPQSDPWLSLQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPY
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB6 SSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDG
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB6 PMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQSES
::::::::::::::::::::::::::: ::. :..:
NP_001 PMGGLGGMESHHMNGSLGSGDMDSISKYSPS-MTMSV
310 320 330
360
pF1KB6 YSPSMTMSV
>>NP_001009955 (OMIM: 607390) single-stranded DNA-bindin (361 aa)
initn: 2024 init1: 1211 opt: 2233 Z-score: 1012.0 bits: 195.8 E(85289): 1.3e-49
Smith-Waterman score: 2233; 83.2% identity (94.2% similar) in 364 aa overlap (1-361:1-361)
10 20 30 40 50 60
pF1KB6 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
:..::: .::::::.::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFAKGK--GSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
:::::::::::::::::::.:::::::::::::::::::::::::::::.:::: ::.::
NP_001 LHSWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPP
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
::::::::::: ::::::.:. :: :::::.:::::..:::::::::::::: ::::.:
NP_001 GFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNP
120 130 140 150 160 170
190 200 210 220 230
pF1KB6 PRGMVPLGP--QNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPG
:::: :.:: ::::..:::: :.:: :.:::.:::::.:::::::..::::::::.:::
NP_001 PRGMGPMGPGPQNYGSGMRPPPNSLG-PAMPGINMGPGAGRPWPNPNSANSIPYSSSSPG
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB6 NYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLG
.:::::::::::::::::::::::::.::.::..: :::: .: ::::::::::::::.:
NP_001 TYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMG
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB6 GMESHHMNGSLGSGDMDSISKNSPNNMS-LSNQPGTPRDDGEMGGNFLNPFQSESYSPSM
::: :::::::::::.:.. ::::::.: .:: :::::::::.:::::. ::...:::::
NP_001 GMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGNFLHSFQNDNYSPSM
300 310 320 330 340 350
360
pF1KB6 TMSV
::::
NP_001 TMSV
360
>>NP_001009998 (OMIM: 607391) single-stranded DNA-bindin (363 aa)
initn: 1846 init1: 1390 opt: 1966 Z-score: 894.4 bits: 174.1 E(85289): 4.4e-43
Smith-Waterman score: 1966; 73.7% identity (91.0% similar) in 365 aa overlap (1-361:1-363)
10 20 30 40 50 60
pF1KB6 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
::.:: ...:::::::::::::::::::::::.:::::::::::::::::::::::::::
NP_001 MYAKG-GKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGF
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
::::::::::::::::.:::.::::.:::::.:::::::::::.:.. ::: : .: .
NP_001 LHSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAA
60 70 80 90 100 110
130 140 150 160 170
pF1KB6 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPT-RQQGHPNMGGPMQRMT
::::::::::.:::::: ::.:.: .:.::::::::..:.:. : ::::.:::::::.:
NP_001 GFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVT
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 PPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGN
:::::. .:::.:::.:::: :.:.:::.:.:::::: :: .:.. :::::::.:::.
NP_001 PPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSG-NSIPYSSSSPGS
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB6 YVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGG
:.:::::::::::::::::.:::::..::::.:: . : .: :::.::: .:::.....
NP_001 YTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSA
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB6 MESHHMNGSLGSGDMDSISKNSPNNMS-LSNQPGTPRDDGEMG--GNFLNPFQSESYSPS
:: ::.::::::::::.. :.::. .. ::: ::::::::::. :.::.:: ::::::.
NP_001 MEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPG
300 310 320 330 340 350
360
pF1KB6 MTMSV
:::::
NP_001 MTMSV
360
>>XP_006722731 (OMIM: 607391) PREDICTED: single-stranded (413 aa)
initn: 1753 init1: 1390 opt: 1918 Z-score: 872.6 bits: 170.2 E(85289): 7.3e-42
Smith-Waterman score: 1918; 73.2% identity (90.5% similar) in 358 aa overlap (1-354:1-356)
10 20 30 40 50 60
pF1KB6 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
::.:: ...:::::::::::::::::::::::.:::::::::::::::::::::::::::
XP_006 MYAKG-GKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGF
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
::::::::::::::::.:::.::::.:::::.:::::::::::.:.. ::: : .: .
XP_006 LHSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAA
60 70 80 90 100 110
130 140 150 160 170
pF1KB6 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPT-RQQGHPNMGGPMQRMT
::::::::::.:::::: ::.:.: .:.::::::::..:.:. : ::::.:::::::.:
XP_006 GFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVT
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 PPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGN
:::::. .:::.:::.:::: :.:.:::.:.:::::: :: .:.. :::::::.:::.
XP_006 PPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSG-NSIPYSSSSPGS
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB6 YVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGG
:.:::::::::::::::::.:::::..::::.:: . : .: :::.::: .:::.....
XP_006 YTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSA
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB6 MESHHMNGSLGSGDMDSISKNSPNNMS-LSNQPGTPRDDGEMG--GNFLNPFQSESYSPS
:: ::.::::::::::.. :.::. .. ::: ::::::::::. :.::.:: ::: :
XP_006 MEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESVSDC
300 310 320 330 340 350
360
pF1KB6 MTMSV
XP_006 VDSPPAAASGRRGWRAGPGGAAGGPEQDRDRGGPVLARDDHERVMGRQPRASLRA
360 370 380 390 400 410
>>XP_016881925 (OMIM: 607391) PREDICTED: single-stranded (496 aa)
initn: 1753 init1: 1390 opt: 1918 Z-score: 871.6 bits: 170.3 E(85289): 8.3e-42
Smith-Waterman score: 1918; 73.2% identity (90.5% similar) in 358 aa overlap (1-354:1-356)
10 20 30 40 50 60
pF1KB6 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
::.:: ...:::::::::::::::::::::::.:::::::::::::::::::::::::::
XP_016 MYAKG-GKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGF
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
::::::::::::::::.:::.::::.:::::.:::::::::::.:.. ::: : .: .
XP_016 LHSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAA
60 70 80 90 100 110
130 140 150 160 170
pF1KB6 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPT-RQQGHPNMGGPMQRMT
::::::::::.:::::: ::.:.: .:.::::::::..:.:. : ::::.:::::::.:
XP_016 GFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVT
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 PPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGN
:::::. .:::.:::.:::: :.:.:::.:.:::::: :: .:.. :::::::.:::.
XP_016 PPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSG-NSIPYSSSSPGS
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB6 YVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGG
:.:::::::::::::::::.:::::..::::.:: . : .: :::.::: .:::.....
XP_016 YTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSA
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB6 MESHHMNGSLGSGDMDSISKNSPNNMS-LSNQPGTPRDDGEMG--GNFLNPFQSESYSPS
:: ::.::::::::::.. :.::. .. ::: ::::::::::. :.::.:: ::: :
XP_016 MEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESVSDC
300 310 320 330 340 350
360
pF1KB6 MTMSV
XP_016 VDSPPAAASGRRGWRAGPGGAAGGPEQDRDRGGPGGGAAAASFPSPQPLPTPHHLPLLFH
360 370 380 390 400 410
361 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:08:53 2016 done: Fri Nov 4 16:08:55 2016
Total Scan time: 10.080 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]