Result of FASTA (omim) for
pF1KB6539
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6539, 368 aa
1>>>pF1KB6539 368 - 368 aa - 368 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3936+/-0.000427; mu= 16.4794+/- 0.026
mean_var=100.1705+/-20.620, 0's: 0 Z-trim(113.6): 143 B-trim: 692 in 1/50
Lambda= 0.128146
statistics sampled from 22789 (22971) to 22789 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.634), E-opt: 0.2 (0.269), width: 16
Scan time: 6.900
The best scores are: opt bits E(85289)
NP_001129498 (OMIM: 600152) protein SEC13 homolog ( 368) 2591 489.8 4e-138
XP_016862508 (OMIM: 600152) PREDICTED: protein SEC ( 368) 2591 489.8 4e-138
NP_109598 (OMIM: 600152) protein SEC13 homolog iso ( 325) 2288 433.8 2.7e-121
XP_005265436 (OMIM: 600152) PREDICTED: protein SEC ( 325) 2288 433.8 2.7e-121
NP_899195 (OMIM: 600152) protein SEC13 homolog iso ( 322) 2267 429.9 3.9e-120
NP_001129704 (OMIM: 600152) protein SEC13 homolog ( 308) 2181 414.0 2.3e-115
XP_016862509 (OMIM: 600152) PREDICTED: protein SEC ( 301) 2039 387.7 1.8e-107
XP_016862510 (OMIM: 600152) PREDICTED: protein SEC ( 298) 2018 383.8 2.7e-106
NP_001265875 (OMIM: 600152) protein SEC13 homolog ( 194) 1054 205.4 8.9e-53
NP_112493 (OMIM: 609263) nucleoporin SEH1 isoform ( 360) 346 74.8 3.5e-13
NP_001013455 (OMIM: 609263) nucleoporin SEH1 isofo ( 421) 346 74.9 3.9e-13
XP_011524046 (OMIM: 609263) PREDICTED: nucleoporin ( 380) 316 69.3 1.7e-11
XP_011524044 (OMIM: 609263) PREDICTED: nucleoporin ( 441) 316 69.3 1.9e-11
NP_004795 (OMIM: 604333) probable cytosolic iron-s ( 339) 255 57.9 3.8e-08
NP_060726 (OMIM: 616620) ribosome biogenesis prote ( 423) 195 46.9 9.8e-05
XP_016881514 (OMIM: 609263) PREDICTED: nucleoporin ( 311) 184 44.8 0.00032
XP_005258209 (OMIM: 609263) PREDICTED: nucleoporin ( 372) 184 44.9 0.00037
XP_011524045 (OMIM: 609263) PREDICTED: nucleoporin ( 392) 184 44.9 0.00038
XP_011509771 (OMIM: 616620) PREDICTED: ribosome bi ( 285) 180 44.0 0.00051
NP_002884 (OMIM: 300825) histone-binding protein R ( 425) 171 42.5 0.0021
NP_001185648 (OMIM: 300825) histone-binding protei ( 469) 171 42.6 0.0023
XP_016881516 (OMIM: 609263) PREDICTED: nucleoporin ( 235) 166 41.3 0.0027
XP_011524048 (OMIM: 609263) PREDICTED: nucleoporin ( 296) 166 41.4 0.0031
XP_016881515 (OMIM: 609263) PREDICTED: nucleoporin ( 296) 166 41.4 0.0031
XP_011524047 (OMIM: 609263) PREDICTED: nucleoporin ( 316) 166 41.5 0.0033
XP_005267076 (OMIM: 215100,266500,601757,614879) P ( 285) 163 40.9 0.0045
NP_000279 (OMIM: 215100,266500,601757,614879) pero ( 323) 163 40.9 0.0049
XP_016866423 (OMIM: 215100,266500,601757,614879) P ( 199) 160 40.1 0.0052
NP_620640 (OMIM: 601787) transcription initiation ( 745) 166 41.8 0.0059
NP_008882 (OMIM: 601787) transcription initiation ( 800) 166 41.9 0.0062
NP_001273158 (OMIM: 610617) denticleless protein h ( 459) 163 41.1 0.0063
NP_001308124 (OMIM: 270710,602342,608628,616944) F ( 427) 162 40.9 0.0068
NP_001310943 (OMIM: 605002) coronin-2B isoform 2 [ ( 475) 162 40.9 0.0073
NP_001177385 (OMIM: 605002) coronin-2B isoform 2 [ ( 475) 162 40.9 0.0073
NP_001177386 (OMIM: 605002) coronin-2B isoform 2 [ ( 475) 162 40.9 0.0073
NP_001310944 (OMIM: 605002) coronin-2B isoform 2 [ ( 475) 162 40.9 0.0073
NP_006082 (OMIM: 605002) coronin-2B isoform 1 [Hom ( 480) 162 40.9 0.0073
XP_011511443 (OMIM: 270710,602342,608628,616944) P ( 514) 162 40.9 0.0077
XP_016862674 (OMIM: 270710,602342,608628,616944) P ( 514) 162 40.9 0.0077
NP_078941 (OMIM: 270710,602342,608628,616944) F-bo ( 514) 162 40.9 0.0077
XP_011511444 (OMIM: 270710,602342,608628,616944) P ( 514) 162 40.9 0.0077
NP_001308122 (OMIM: 270710,602342,608628,616944) F ( 514) 162 40.9 0.0077
XP_006713809 (OMIM: 270710,602342,608628,616944) P ( 514) 162 40.9 0.0077
XP_011511445 (OMIM: 270710,602342,608628,616944) P ( 514) 162 40.9 0.0077
NP_001308123 (OMIM: 270710,602342,608628,616944) F ( 514) 162 40.9 0.0077
XP_005247832 (OMIM: 270710,602342,608628,616944) P ( 514) 162 40.9 0.0077
XP_011507916 (OMIM: 610617) PREDICTED: denticleles ( 668) 163 41.2 0.0081
NP_001273159 (OMIM: 610617) denticleless protein h ( 688) 163 41.2 0.0083
NP_057532 (OMIM: 610617) denticleless protein homo ( 730) 163 41.3 0.0086
>>NP_001129498 (OMIM: 600152) protein SEC13 homolog isof (368 aa)
initn: 2591 init1: 2591 opt: 2591 Z-score: 2600.7 bits: 489.8 E(85289): 4e-138
Smith-Waterman score: 2591; 100.0% identity (100.0% similar) in 368 aa overlap (1-368:1-368)
10 20 30 40 50 60
pF1KB6 MREPVLTWCVPLELLCSHPLPLSAFLKSQVKLYTYRACAGKDEMGKMVSVINTVDTSHED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MREPVLTWCVPLELLCSHPLPLSAFLKSQVKLYTYRACAGKDEMGKMVSVINTVDTSHED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNIL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 ASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 TGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLW
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 KEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 PKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASV
310 320 330 340 350 360
pF1KB6 TEGQQNEQ
::::::::
NP_001 TEGQQNEQ
>>XP_016862508 (OMIM: 600152) PREDICTED: protein SEC13 h (368 aa)
initn: 2591 init1: 2591 opt: 2591 Z-score: 2600.7 bits: 489.8 E(85289): 4e-138
Smith-Waterman score: 2591; 100.0% identity (100.0% similar) in 368 aa overlap (1-368:1-368)
10 20 30 40 50 60
pF1KB6 MREPVLTWCVPLELLCSHPLPLSAFLKSQVKLYTYRACAGKDEMGKMVSVINTVDTSHED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MREPVLTWCVPLELLCSHPLPLSAFLKSQVKLYTYRACAGKDEMGKMVSVINTVDTSHED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNIL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 ASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 TGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLW
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 KEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 PKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASV
310 320 330 340 350 360
pF1KB6 TEGQQNEQ
::::::::
XP_016 TEGQQNEQ
>>NP_109598 (OMIM: 600152) protein SEC13 homolog isoform (325 aa)
initn: 2288 init1: 2288 opt: 2288 Z-score: 2298.6 bits: 433.8 E(85289): 2.7e-121
Smith-Waterman score: 2288; 100.0% identity (100.0% similar) in 325 aa overlap (44-368:1-325)
20 30 40 50 60 70
pF1KB6 LLCSHPLPLSAFLKSQVKLYTYRACAGKDEMGKMVSVINTVDTSHEDMIHDAQMDYYGTR
::::::::::::::::::::::::::::::
NP_109 MGKMVSVINTVDTSHEDMIHDAQMDYYGTR
10 20 30
80 90 100 110 120 130
pF1KB6 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_109 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB6 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_109 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINN
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB6 AHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_109 AHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB6 LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_109 LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWH
220 230 240 250 260 270
320 330 340 350 360
pF1KB6 VSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASVTEGQQNEQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_109 VSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASVTEGQQNEQ
280 290 300 310 320
>>XP_005265436 (OMIM: 600152) PREDICTED: protein SEC13 h (325 aa)
initn: 2288 init1: 2288 opt: 2288 Z-score: 2298.6 bits: 433.8 E(85289): 2.7e-121
Smith-Waterman score: 2288; 100.0% identity (100.0% similar) in 325 aa overlap (44-368:1-325)
20 30 40 50 60 70
pF1KB6 LLCSHPLPLSAFLKSQVKLYTYRACAGKDEMGKMVSVINTVDTSHEDMIHDAQMDYYGTR
::::::::::::::::::::::::::::::
XP_005 MGKMVSVINTVDTSHEDMIHDAQMDYYGTR
10 20 30
80 90 100 110 120 130
pF1KB6 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB6 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINN
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB6 AHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB6 LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWH
220 230 240 250 260 270
320 330 340 350 360
pF1KB6 VSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASVTEGQQNEQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASVTEGQQNEQ
280 290 300 310 320
>>NP_899195 (OMIM: 600152) protein SEC13 homolog isoform (322 aa)
initn: 2267 init1: 2267 opt: 2267 Z-score: 2277.7 bits: 429.9 E(85289): 3.9e-120
Smith-Waterman score: 2267; 100.0% identity (100.0% similar) in 322 aa overlap (47-368:1-322)
20 30 40 50 60 70
pF1KB6 SHPLPLSAFLKSQVKLYTYRACAGKDEMGKMVSVINTVDTSHEDMIHDAQMDYYGTRLAT
::::::::::::::::::::::::::::::
NP_899 MVSVINTVDTSHEDMIHDAQMDYYGTRLAT
10 20 30
80 90 100 110 120 130
pF1KB6 CSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 CSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB6 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHT
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB6 IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEA
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB6 HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSW
220 230 240 250 260 270
320 330 340 350 360
pF1KB6 SITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASVTEGQQNEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 SITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASVTEGQQNEQ
280 290 300 310 320
>>NP_001129704 (OMIM: 600152) protein SEC13 homolog isof (308 aa)
initn: 2181 init1: 2181 opt: 2181 Z-score: 2192.0 bits: 414.0 E(85289): 2.3e-115
Smith-Waterman score: 2181; 100.0% identity (100.0% similar) in 308 aa overlap (61-368:1-308)
40 50 60 70 80 90
pF1KB6 KLYTYRACAGKDEMGKMVSVINTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRN
::::::::::::::::::::::::::::::
NP_001 MIHDAQMDYYGTRLATCSSDRSVKIFDVRN
10 20 30
100 110 120 130 140 150
pF1KB6 GGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDS
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB6 SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB6 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSI
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB6 GLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDN
220 230 240 250 260 270
340 350 360
pF1KB6 KVTLWKESVDGQWVCISDVNKGQGSVSASVTEGQQNEQ
::::::::::::::::::::::::::::::::::::::
NP_001 KVTLWKESVDGQWVCISDVNKGQGSVSASVTEGQQNEQ
280 290 300
>>XP_016862509 (OMIM: 600152) PREDICTED: protein SEC13 h (301 aa)
initn: 2207 init1: 2039 opt: 2039 Z-score: 2050.3 bits: 387.7 E(85289): 1.8e-107
Smith-Waterman score: 2039; 99.3% identity (99.3% similar) in 291 aa overlap (44-334:1-291)
20 30 40 50 60 70
pF1KB6 LLCSHPLPLSAFLKSQVKLYTYRACAGKDEMGKMVSVINTVDTSHEDMIHDAQMDYYGTR
::::::::::::::::::::::::::::::
XP_016 MGKMVSVINTVDTSHEDMIHDAQMDYYGTR
10 20 30
80 90 100 110 120 130
pF1KB6 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB6 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINN
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB6 AHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB6 LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWH
220 230 240 250 260 270
320 330 340 350 360
pF1KB6 VSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASVTEGQQNEQ
:::::::::::::::::: :
XP_016 VSWSITANILAVSGGDNKEELQMQPQIDHLP
280 290 300
>>XP_016862510 (OMIM: 600152) PREDICTED: protein SEC13 h (298 aa)
initn: 2186 init1: 2018 opt: 2018 Z-score: 2029.3 bits: 383.8 E(85289): 2.7e-106
Smith-Waterman score: 2018; 99.3% identity (99.3% similar) in 288 aa overlap (47-334:1-288)
20 30 40 50 60 70
pF1KB6 SHPLPLSAFLKSQVKLYTYRACAGKDEMGKMVSVINTVDTSHEDMIHDAQMDYYGTRLAT
::::::::::::::::::::::::::::::
XP_016 MVSVINTVDTSHEDMIHDAQMDYYGTRLAT
10 20 30
80 90 100 110 120 130
pF1KB6 CSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB6 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHT
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB6 IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEA
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB6 HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSW
220 230 240 250 260 270
320 330 340 350 360
pF1KB6 SITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASVTEGQQNEQ
::::::::::::::: :
XP_016 SITANILAVSGGDNKEELQMQPQIDHLP
280 290
>>NP_001265875 (OMIM: 600152) protein SEC13 homolog isof (194 aa)
initn: 1188 init1: 1054 opt: 1054 Z-score: 1068.5 bits: 205.4 E(85289): 8.9e-53
Smith-Waterman score: 1054; 99.3% identity (100.0% similar) in 151 aa overlap (47-197:1-151)
20 30 40 50 60 70
pF1KB6 SHPLPLSAFLKSQVKLYTYRACAGKDEMGKMVSVINTVDTSHEDMIHDAQMDYYGTRLAT
::::::::::::::::::::::::::::::
NP_001 MVSVINTVDTSHEDMIHDAQMDYYGTRLAT
10 20 30
80 90 100 110 120 130
pF1KB6 CSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB6 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHT
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB6 IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEA
.
NP_001 VSPSPAFRAVRAPALPRVCCSLPRGWHGRVPAGQWAGEWSADQT
160 170 180 190
>>NP_112493 (OMIM: 609263) nucleoporin SEH1 isoform 2 [H (360 aa)
initn: 493 init1: 158 opt: 346 Z-score: 357.7 bits: 74.8 E(85289): 3.5e-13
Smith-Waterman score: 577; 31.0% identity (61.7% similar) in 345 aa overlap (50-366:3-336)
20 30 40 50 60 70
pF1KB6 LPLSAFLKSQVKLYTYRACAGKDEMGKMVSVINTVDTSHEDMIHDAQMDYYGTRLATCSS
: .. ..:.:.:::...:..: :.:::::
NP_112 MFVARSIAADHKDLIHDVSFDFHGRRMATCSS
10 20 30
80 90 100 110 120 130
pF1KB6 DRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGT
:.:::..: ..:. :. . : : ::.:.:::: .:..:::::.:: . .:.: :
NP_112 DQSVKVWDKSESGDWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGE
40 50 60 70 80 90
140 150 160 170 180
pF1KB6 ----------WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLT---YTGEGQ
: : . .::..: .::. .::.:: :.:: . . . .:
NP_112 SNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQ
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB6 WEVKKINNAHTIGCNAVSWAPAV--VPGSLIDHPSGQK-PNYIKRFASGGCDNLIKLWKE
: ... . . ..:. .:: :. . . .: : .. :: . . .....
NP_112 WSLQH-EISCKLSCSCISWNPSSSRAHSPMIAVGSDDSSPNAMAK---------VQIFEY
160 170 180 190 200
250 260 270 280 290 300
pF1KB6 EEDG-QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVF-IWTCDDASSNTWS
.:. .. . . : . .: :.:.:.::..: .: ..: :.: . ... .
NP_112 NENTRKYAKAETLMTVTDPVHDIAFAPNLGRSFHILAIATKDVRIFTLKPVRKELTSSGG
210 220 230 240 250 260
310 320 330 340 350
pF1KB6 P-----KLLHKF---NDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKG
: ... .: :. ::.:::.::...:: :: :. : ::: . .: : . . ::
NP_112 PTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMDNWKC-TGILKG
270 280 290 300 310 320
360
pF1KB6 QGS-VSASVTEGQQNEQ
.:: :..: .: .:
NP_112 NGSPVNGSSQQGTSNPSLGSTIPSLQNSLNGSSAGRKHS
330 340 350 360
368 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:10:10 2016 done: Fri Nov 4 16:10:11 2016
Total Scan time: 6.900 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]