Result of FASTA (ccds) for
pF1KB6539
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6539, 368 aa
1>>>pF1KB6539 368 - 368 aa - 368 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1107+/-0.000983; mu= 12.1487+/- 0.058
mean_var=92.1868+/-18.781, 0's: 0 Z-trim(106.7): 85 B-trim: 156 in 1/49
Lambda= 0.133580
statistics sampled from 9034 (9127) to 9034 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.28), width: 16
Scan time: 2.460
The best scores are: opt bits E(32554)
CCDS63540.1 SEC13 gene_id:6396|Hs108|chr3 ( 368) 2591 509.7 1.6e-144
CCDS2599.1 SEC13 gene_id:6396|Hs108|chr3 ( 322) 2267 447.3 8.8e-126
CCDS46751.1 SEC13 gene_id:6396|Hs108|chr3 ( 308) 2181 430.7 8.3e-121
CCDS45832.1 SEH1L gene_id:81929|Hs108|chr18 ( 360) 346 77.1 2.7e-14
CCDS32791.1 SEH1L gene_id:81929|Hs108|chr18 ( 421) 346 77.1 3e-14
>>CCDS63540.1 SEC13 gene_id:6396|Hs108|chr3 (368 aa)
initn: 2591 init1: 2591 opt: 2591 Z-score: 2708.2 bits: 509.7 E(32554): 1.6e-144
Smith-Waterman score: 2591; 100.0% identity (100.0% similar) in 368 aa overlap (1-368:1-368)
10 20 30 40 50 60
pF1KB6 MREPVLTWCVPLELLCSHPLPLSAFLKSQVKLYTYRACAGKDEMGKMVSVINTVDTSHED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MREPVLTWCVPLELLCSHPLPLSAFLKSQVKLYTYRACAGKDEMGKMVSVINTVDTSHED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNIL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 ASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 ASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 TGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 TGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLW
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 KEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 KEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 PKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 PKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASV
310 320 330 340 350 360
pF1KB6 TEGQQNEQ
::::::::
CCDS63 TEGQQNEQ
>>CCDS2599.1 SEC13 gene_id:6396|Hs108|chr3 (322 aa)
initn: 2267 init1: 2267 opt: 2267 Z-score: 2371.6 bits: 447.3 E(32554): 8.8e-126
Smith-Waterman score: 2267; 100.0% identity (100.0% similar) in 322 aa overlap (47-368:1-322)
20 30 40 50 60 70
pF1KB6 SHPLPLSAFLKSQVKLYTYRACAGKDEMGKMVSVINTVDTSHEDMIHDAQMDYYGTRLAT
::::::::::::::::::::::::::::::
CCDS25 MVSVINTVDTSHEDMIHDAQMDYYGTRLAT
10 20 30
80 90 100 110 120 130
pF1KB6 CSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 CSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB6 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHT
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB6 IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEA
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB6 HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSW
220 230 240 250 260 270
320 330 340 350 360
pF1KB6 SITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASVTEGQQNEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 SITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASVTEGQQNEQ
280 290 300 310 320
>>CCDS46751.1 SEC13 gene_id:6396|Hs108|chr3 (308 aa)
initn: 2181 init1: 2181 opt: 2181 Z-score: 2282.3 bits: 430.7 E(32554): 8.3e-121
Smith-Waterman score: 2181; 100.0% identity (100.0% similar) in 308 aa overlap (61-368:1-308)
40 50 60 70 80 90
pF1KB6 KLYTYRACAGKDEMGKMVSVINTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRN
::::::::::::::::::::::::::::::
CCDS46 MIHDAQMDYYGTRLATCSSDRSVKIFDVRN
10 20 30
100 110 120 130 140 150
pF1KB6 GGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDS
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB6 SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB6 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSI
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB6 GLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDN
220 230 240 250 260 270
340 350 360
pF1KB6 KVTLWKESVDGQWVCISDVNKGQGSVSASVTEGQQNEQ
::::::::::::::::::::::::::::::::::::::
CCDS46 KVTLWKESVDGQWVCISDVNKGQGSVSASVTEGQQNEQ
280 290 300
>>CCDS45832.1 SEH1L gene_id:81929|Hs108|chr18 (360 aa)
initn: 493 init1: 158 opt: 346 Z-score: 370.2 bits: 77.1 E(32554): 2.7e-14
Smith-Waterman score: 577; 31.0% identity (61.7% similar) in 345 aa overlap (50-366:3-336)
20 30 40 50 60 70
pF1KB6 LPLSAFLKSQVKLYTYRACAGKDEMGKMVSVINTVDTSHEDMIHDAQMDYYGTRLATCSS
: .. ..:.:.:::...:..: :.:::::
CCDS45 MFVARSIAADHKDLIHDVSFDFHGRRMATCSS
10 20 30
80 90 100 110 120 130
pF1KB6 DRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGT
:.:::..: ..:. :. . : : ::.:.:::: .:..:::::.:: . .:.: :
CCDS45 DQSVKVWDKSESGDWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGE
40 50 60 70 80 90
140 150 160 170 180
pF1KB6 ----------WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLT---YTGEGQ
: : . .::..: .::. .::.:: :.:: . . . .:
CCDS45 SNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQ
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB6 WEVKKINNAHTIGCNAVSWAPAV--VPGSLIDHPSGQK-PNYIKRFASGGCDNLIKLWKE
: ... . . ..:. .:: :. . . .: : .. :: . . .....
CCDS45 WSLQH-EISCKLSCSCISWNPSSSRAHSPMIAVGSDDSSPNAMAK---------VQIFEY
160 170 180 190 200
250 260 270 280 290 300
pF1KB6 EEDG-QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVF-IWTCDDASSNTWS
.:. .. . . : . .: :.:.:.::..: .: ..: :.: . ... .
CCDS45 NENTRKYAKAETLMTVTDPVHDIAFAPNLGRSFHILAIATKDVRIFTLKPVRKELTSSGG
210 220 230 240 250 260
310 320 330 340 350
pF1KB6 P-----KLLHKF---NDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKG
: ... .: :. ::.:::.::...:: :: :. : ::: . .: : . . ::
CCDS45 PTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMDNWKC-TGILKG
270 280 290 300 310 320
360
pF1KB6 QGS-VSASVTEGQQNEQ
.:: :..: .: .:
CCDS45 NGSPVNGSSQQGTSNPSLGSTIPSLQNSLNGSSAGRKHS
330 340 350 360
>>CCDS32791.1 SEH1L gene_id:81929|Hs108|chr18 (421 aa)
initn: 493 init1: 158 opt: 346 Z-score: 369.2 bits: 77.1 E(32554): 3e-14
Smith-Waterman score: 577; 31.0% identity (61.7% similar) in 345 aa overlap (50-366:3-336)
20 30 40 50 60 70
pF1KB6 LPLSAFLKSQVKLYTYRACAGKDEMGKMVSVINTVDTSHEDMIHDAQMDYYGTRLATCSS
: .. ..:.:.:::...:..: :.:::::
CCDS32 MFVARSIAADHKDLIHDVSFDFHGRRMATCSS
10 20 30
80 90 100 110 120 130
pF1KB6 DRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGT
:.:::..: ..:. :. . : : ::.:.:::: .:..:::::.:: . .:.: :
CCDS32 DQSVKVWDKSESGDWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGE
40 50 60 70 80 90
140 150 160 170 180
pF1KB6 ----------WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLT---YTGEGQ
: : . .::..: .::. .::.:: :.:: . . . .:
CCDS32 SNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQ
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB6 WEVKKINNAHTIGCNAVSWAPAV--VPGSLIDHPSGQK-PNYIKRFASGGCDNLIKLWKE
: ... . . ..:. .:: :. . . .: : .. :: . . .....
CCDS32 WSLQH-EISCKLSCSCISWNPSSSRAHSPMIAVGSDDSSPNAMAK---------VQIFEY
160 170 180 190 200
250 260 270 280 290 300
pF1KB6 EEDG-QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVF-IWTCDDASSNTWS
.:. .. . . : . .: :.:.:.::..: .: ..: :.: . ... .
CCDS32 NENTRKYAKAETLMTVTDPVHDIAFAPNLGRSFHILAIATKDVRIFTLKPVRKELTSSGG
210 220 230 240 250 260
310 320 330 340 350
pF1KB6 P-----KLLHKF---NDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKG
: ... .: :. ::.:::.::...:: :: :. : ::: . .: : . . ::
CCDS32 PTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMDNWKC-TGILKG
270 280 290 300 310 320
360
pF1KB6 QGS-VSASVTEGQQNEQ
.:: :..: .: .:
CCDS32 NGSPVNGSSQQGTSNPSLGSTIPSLQNSLNGSSAGRYFFTPLDSPRAGSRWSSYAQLLPP
330 340 350 360 370 380
368 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:10:10 2016 done: Fri Nov 4 16:10:10 2016
Total Scan time: 2.460 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]