Result of FASTA (omim) for
pF1KB6524
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6524, 387 aa
1>>>pF1KB6524 387 - 387 aa - 387 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5250+/-0.000301; mu= 16.5177+/- 0.019
mean_var=80.0614+/-16.057, 0's: 0 Z-trim(118.6): 48 B-trim: 444 in 2/48
Lambda= 0.143338
statistics sampled from 31667 (31716) to 31667 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.744), E-opt: 0.2 (0.372), width: 16
Scan time: 9.290
The best scores are: opt bits E(85289)
NP_000014 (OMIM: 600119,608099) alpha-sarcoglycan ( 387) 2654 558.1 1.3e-158
XP_011523422 (OMIM: 600119,608099) PREDICTED: alph ( 467) 2516 529.6 5.9e-150
XP_011523426 (OMIM: 600119,608099) PREDICTED: alph ( 311) 1795 380.4 3.3e-105
XP_016880439 (OMIM: 600119,608099) PREDICTED: alph ( 324) 1719 364.7 1.8e-100
XP_011523424 (OMIM: 600119,608099) PREDICTED: alph ( 375) 1716 364.1 3.1e-100
XP_011523423 (OMIM: 600119,608099) PREDICTED: alph ( 417) 1362 290.9 3.7e-78
NP_001129169 (OMIM: 600119,608099) alpha-sarcoglyc ( 263) 1326 283.3 4.5e-76
XP_011523425 (OMIM: 600119,608099) PREDICTED: alph ( 343) 1326 283.4 5.5e-76
XP_016868254 (OMIM: 159900,604149) PREDICTED: epsi ( 408) 1092 235.1 2.3e-61
NP_003910 (OMIM: 159900,604149) epsilon-sarcoglyca ( 437) 1092 235.1 2.5e-61
XP_016868252 (OMIM: 159900,604149) PREDICTED: epsi ( 438) 1092 235.1 2.5e-61
XP_011514969 (OMIM: 159900,604149) PREDICTED: epsi ( 438) 1092 235.1 2.5e-61
NP_001092871 (OMIM: 159900,604149) epsilon-sarcogl ( 462) 1092 235.1 2.6e-61
XP_011514967 (OMIM: 159900,604149) PREDICTED: epsi ( 467) 1092 235.1 2.6e-61
XP_005250732 (OMIM: 159900,604149) PREDICTED: epsi ( 473) 1092 235.1 2.6e-61
XP_011514965 (OMIM: 159900,604149) PREDICTED: epsi ( 503) 1092 235.1 2.8e-61
NP_001288068 (OMIM: 159900,604149) epsilon-sarcogl ( 396) 1060 228.4 2.2e-59
XP_016868255 (OMIM: 159900,604149) PREDICTED: epsi ( 399) 1038 223.9 5.3e-58
XP_016868257 (OMIM: 159900,604149) PREDICTED: epsi ( 346) 1037 223.6 5.4e-58
XP_016868253 (OMIM: 159900,604149) PREDICTED: epsi ( 428) 1038 223.9 5.6e-58
XP_011514971 (OMIM: 159900,604149) PREDICTED: epsi ( 376) 1037 223.7 5.8e-58
NP_001092870 (OMIM: 159900,604149) epsilon-sarcogl ( 451) 1038 223.9 5.8e-58
XP_011514968 (OMIM: 159900,604149) PREDICTED: epsi ( 458) 1038 223.9 5.9e-58
XP_005250734 (OMIM: 159900,604149) PREDICTED: epsi ( 464) 1038 223.9 5.9e-58
XP_011514966 (OMIM: 159900,604149) PREDICTED: epsi ( 494) 1038 224.0 6.2e-58
XP_016868258 (OMIM: 159900,604149) PREDICTED: epsi ( 337) 983 212.5 1.2e-54
XP_016868256 (OMIM: 159900,604149) PREDICTED: epsi ( 367) 983 212.5 1.3e-54
XP_016868259 (OMIM: 159900,604149) PREDICTED: epsi ( 224) 274 65.7 1.2e-10
>>NP_000014 (OMIM: 600119,608099) alpha-sarcoglycan isof (387 aa)
initn: 2654 init1: 2654 opt: 2654 Z-score: 2968.6 bits: 558.1 E(85289): 1.3e-158
Smith-Waterman score: 2654; 100.0% identity (100.0% similar) in 387 aa overlap (1-387:1-387)
10 20 30 40 50 60
pF1KB6 MAETLFWTPLLVVLLAGLGDTEAQQTTLHPLVGRVFVHTLDHETFLSLPEHVAVPPAVHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MAETLFWTPLLVVLLAGLGDTEAQQTTLHPLVGRVFVHTLDHETFLSLPEHVAVPPAVHI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TYHAHLQGHPDLPRWLRYTQRSPHHPGFLYGSATPEDRGLQVIEVTAYNRDSFDTTRQRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 TYHAHLQGHPDLPRWLRYTQRSPHHPGFLYGSATPEDRGLQVIEVTAYNRDSFDTTRQRL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 VLEIGDPEGPLLPYQAEFLVRSHDAEEVLPSTPASRFLSALGGLWEPGELQLLNVTSALD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 VLEIGDPEGPLLPYQAEFLVRSHDAEEVLPSTPASRFLSALGGLWEPGELQLLNVTSALD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 RGGRVPLPIEGRKEGVYIKVGSASPFSTCLKMVASPDSHARCAQGQPPLLSCYDTLAPHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 RGGRVPLPIEGRKEGVYIKVGSASPFSTCLKMVASPDSHARCAQGQPPLLSCYDTLAPHF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 RVDWCNVTLVDKSVPEPADEVPTPGDGILEHDPFFCPPTEAPDRDFLVDALVTLLVPLLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 RVDWCNVTLVDKSVPEPADEVPTPGDGILEHDPFFCPPTEAPDRDFLVDALVTLLVPLLV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 ALLLTLLLAYVMCCRREGRLKRDLATSDIQMVHHCTIHGNTEELRQMAASREVPRPLSTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 ALLLTLLLAYVMCCRREGRLKRDLATSDIQMVHHCTIHGNTEELRQMAASREVPRPLSTL
310 320 330 340 350 360
370 380
pF1KB6 PMFNVHTGERLPPRVDSAQVPLILDQH
:::::::::::::::::::::::::::
NP_000 PMFNVHTGERLPPRVDSAQVPLILDQH
370 380
>>XP_011523422 (OMIM: 600119,608099) PREDICTED: alpha-sa (467 aa)
initn: 2516 init1: 2516 opt: 2516 Z-score: 2813.2 bits: 529.6 E(85289): 5.9e-150
Smith-Waterman score: 2516; 100.0% identity (100.0% similar) in 367 aa overlap (1-367:55-421)
10 20 30
pF1KB6 MAETLFWTPLLVVLLAGLGDTEAQQTTLHP
::::::::::::::::::::::::::::::
XP_011 PSCPEPPPSFPPLLPAPCLCHSPGGPGRAAMAETLFWTPLLVVLLAGLGDTEAQQTTLHP
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB6 LVGRVFVHTLDHETFLSLPEHVAVPPAVHITYHAHLQGHPDLPRWLRYTQRSPHHPGFLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LVGRVFVHTLDHETFLSLPEHVAVPPAVHITYHAHLQGHPDLPRWLRYTQRSPHHPGFLY
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB6 GSATPEDRGLQVIEVTAYNRDSFDTTRQRLVLEIGDPEGPLLPYQAEFLVRSHDAEEVLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GSATPEDRGLQVIEVTAYNRDSFDTTRQRLVLEIGDPEGPLLPYQAEFLVRSHDAEEVLP
150 160 170 180 190 200
160 170 180 190 200 210
pF1KB6 STPASRFLSALGGLWEPGELQLLNVTSALDRGGRVPLPIEGRKEGVYIKVGSASPFSTCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 STPASRFLSALGGLWEPGELQLLNVTSALDRGGRVPLPIEGRKEGVYIKVGSASPFSTCL
210 220 230 240 250 260
220 230 240 250 260 270
pF1KB6 KMVASPDSHARCAQGQPPLLSCYDTLAPHFRVDWCNVTLVDKSVPEPADEVPTPGDGILE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KMVASPDSHARCAQGQPPLLSCYDTLAPHFRVDWCNVTLVDKSVPEPADEVPTPGDGILE
270 280 290 300 310 320
280 290 300 310 320 330
pF1KB6 HDPFFCPPTEAPDRDFLVDALVTLLVPLLVALLLTLLLAYVMCCRREGRLKRDLATSDIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HDPFFCPPTEAPDRDFLVDALVTLLVPLLVALLLTLLLAYVMCCRREGRLKRDLATSDIQ
330 340 350 360 370 380
340 350 360 370 380
pF1KB6 MVHHCTIHGNTEELRQMAASREVPRPLSTLPMFNVHTGERLPPRVDSAQVPLILDQH
:::::::::::::::::::::::::::::::::::::
XP_011 MVHHCTIHGNTEELRQMAASREVPRPLSTLPMFNVHTVVPGPALTSSSLLCPHHEWHIPP
390 400 410 420 430 440
XP_011 ADSSSWPSWNPGSKQAGRGGGVG
450 460
>>XP_011523426 (OMIM: 600119,608099) PREDICTED: alpha-sa (311 aa)
initn: 1795 init1: 1795 opt: 1795 Z-score: 2009.9 bits: 380.4 E(85289): 3.3e-105
Smith-Waterman score: 1795; 99.2% identity (99.6% similar) in 265 aa overlap (103-367:1-265)
80 90 100 110 120 130
pF1KB6 PRWLRYTQRSPHHPGFLYGSATPEDRGLQVIEVTAYNRDSFDTTRQRLVLEIGDPEGPLL
. ::::::::::::::::::::::::::::
XP_011 MSVTAYNRDSFDTTRQRLVLEIGDPEGPLL
10 20 30
140 150 160 170 180 190
pF1KB6 PYQAEFLVRSHDAEEVLPSTPASRFLSALGGLWEPGELQLLNVTSALDRGGRVPLPIEGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PYQAEFLVRSHDAEEVLPSTPASRFLSALGGLWEPGELQLLNVTSALDRGGRVPLPIEGR
40 50 60 70 80 90
200 210 220 230 240 250
pF1KB6 KEGVYIKVGSASPFSTCLKMVASPDSHARCAQGQPPLLSCYDTLAPHFRVDWCNVTLVDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KEGVYIKVGSASPFSTCLKMVASPDSHARCAQGQPPLLSCYDTLAPHFRVDWCNVTLVDK
100 110 120 130 140 150
260 270 280 290 300 310
pF1KB6 SVPEPADEVPTPGDGILEHDPFFCPPTEAPDRDFLVDALVTLLVPLLVALLLTLLLAYVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SVPEPADEVPTPGDGILEHDPFFCPPTEAPDRDFLVDALVTLLVPLLVALLLTLLLAYVM
160 170 180 190 200 210
320 330 340 350 360 370
pF1KB6 CCRREGRLKRDLATSDIQMVHHCTIHGNTEELRQMAASREVPRPLSTLPMFNVHTGERLP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CCRREGRLKRDLATSDIQMVHHCTIHGNTEELRQMAASREVPRPLSTLPMFNVHTVVPGP
220 230 240 250 260 270
380
pF1KB6 PRVDSAQVPLILDQH
XP_011 ALTSSSLLCPHHEWHIPPADSSSWPSWNPGSKQAGRGGGVG
280 290 300 310
>>XP_016880439 (OMIM: 600119,608099) PREDICTED: alpha-sa (324 aa)
initn: 1713 init1: 1713 opt: 1719 Z-score: 1924.7 bits: 364.7 E(85289): 1.8e-100
Smith-Waterman score: 1719; 93.8% identity (96.0% similar) in 272 aa overlap (1-271:55-323)
10 20 30
pF1KB6 MAETLFWTPLLVVLLAGLGDTEAQQTTLHP
::::::::::::::::::::::::::::::
XP_016 PSCPEPPPSFPPLLPAPCLCHSPGGPGRAAMAETLFWTPLLVVLLAGLGDTEAQQTTLHP
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB6 LVGRVFVHTLDHETFLSLPEHVAVPPAVHITYHAHLQGHPDLPRWLRYTQRSPHHPGFLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LVGRVFVHTLDHETFLSLPEHVAVPPAVHITYHAHLQGHPDLPRWLRYTQRSPHHPGFLY
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB6 GSATPEDRGLQVIEVTAYNRDSFDTTRQRLVLEIGDPEGPLLPYQAEFLVRSHDAEEVLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSATPEDRGLQVIEVTAYNRDSFDTTRQRLVLEIGDPEGPLLPYQAEFLVRSHDAEEVLP
150 160 170 180 190 200
160 170 180 190 200 210
pF1KB6 STPASRFLSALGGLWEPGELQLLNVTSALDRGGRVPLPIEGRKEGVYIKVGSASPFSTCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 STPASRFLSALGGLWEPGELQLLNVTSALDRGGRVPLPIEGRKEGVYIKVGSASPFSTCL
210 220 230 240 250 260
220 230 240 250 260
pF1KB6 KMVASPDSHARCAQGQPPLLSCYDTLAPHFRVDWCNVTLVDKSVPEPADEVPT-PGDGIL
::::::::::::::::::::::::::::::::::::::: : : : . : :.. .:
XP_016 KMVASPDSHARCAQGQPPLLSCYDTLAPHFRVDWCNVTL---SWPLPCSWGPLCPASHFL
270 280 290 300 310 320
270 280 290 300 310 320
pF1KB6 EHDPFFCPPTEAPDRDFLVDALVTLLVPLLVALLLTLLLAYVMCCRREGRLKRDLATSDI
..
XP_016 RQP
>>XP_011523424 (OMIM: 600119,608099) PREDICTED: alpha-sa (375 aa)
initn: 1716 init1: 1716 opt: 1716 Z-score: 1920.5 bits: 364.1 E(85289): 3.1e-100
Smith-Waterman score: 1719; 91.5% identity (92.6% similar) in 282 aa overlap (1-282:55-322)
10 20 30
pF1KB6 MAETLFWTPLLVVLLAGLGDTEAQQTTLHP
::::::::::::::::::::::::::::::
XP_011 PSCPEPPPSFPPLLPAPCLCHSPGGPGRAAMAETLFWTPLLVVLLAGLGDTEAQQTTLHP
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB6 LVGRVFVHTLDHETFLSLPEHVAVPPAVHITYHAHLQGHPDLPRWLRYTQRSPHHPGFLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LVGRVFVHTLDHETFLSLPEHVAVPPAVHITYHAHLQGHPDLPRWLRYTQRSPHHPGFLY
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB6 GSATPEDRGLQVIEVTAYNRDSFDTTRQRLVLEIGDPEGPLLPYQAEFLVRSHDAEEVLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GSATPEDRGLQVIEVTAYNRDSFDTTRQRLVLEIGDPEGPLLPYQAEFLVRSHDAEEVLP
150 160 170 180 190 200
160 170 180 190 200 210
pF1KB6 STPASRFLSALGGLWEPGELQLLNVTSALDRGGRVPLPIEGRKEGVYIKVGSASPFSTCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 STPASRFLSALGGLWEPGELQLLNVTSALDRGGRVPLPIEGRKEGVYIKVGSASPFSTCL
210 220 230 240 250 260
220 230 240 250 260 270
pF1KB6 KMVASPDSHARCAQGQPPLLSCYDTLAPHFRVDWCNVTLVDKSVPEPADEVPTPGDGILE
::::::::::::::::::::::::::::::::::::::: :.: : : :.
XP_011 KMVASPDSHARCAQGQPPLLSCYDTLAPHFRVDWCNVTL--------AEERP----GYLR
270 280 290 300 310
280 290 300 310 320 330
pF1KB6 HDPFFCPPTEAPDRDFLVDALVTLLVPLLVALLLTLLLAYVMCCRREGRLKRDLATSDIQ
: :: . :
XP_011 HPD--GPPLHHPREHRGAAADGGQPRGAPATLHPAHVQCAHSGSRSSPDFILPSLSTPRV
320 330 340 350 360 370
>>XP_011523423 (OMIM: 600119,608099) PREDICTED: alpha-sa (417 aa)
initn: 1440 init1: 1362 opt: 1362 Z-score: 1524.2 bits: 290.9 E(85289): 3.7e-78
Smith-Waterman score: 2042; 86.4% identity (86.4% similar) in 367 aa overlap (1-367:55-371)
10 20 30
pF1KB6 MAETLFWTPLLVVLLAGLGDTEAQQTTLHP
::::::::::::::::::::::::::::::
XP_011 PSCPEPPPSFPPLLPAPCLCHSPGGPGRAAMAETLFWTPLLVVLLAGLGDTEAQQTTLHP
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB6 LVGRVFVHTLDHETFLSLPEHVAVPPAVHITYHAHLQGHPDLPRWLRYTQRSPHHPGFLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LVGRVFVHTLDHETFLSLPEHVAVPPAVHITYHAHLQGHPDLPRWLRYTQRSPHHPGFLY
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB6 GSATPEDRGLQVIEVTAYNRDSFDTTRQRLVLEIGDPEGPLLPYQAEFLVRSHDAEEVLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GSATPEDRGLQVIEVTAYNRDSFDTTRQRLVLEIGDPEGPLLPYQAEFLVRSHDAEEVLP
150 160 170 180 190 200
160 170 180 190 200 210
pF1KB6 STPASRFLSALGGLWEPGELQLLNVTSALDRGGRVPLPIEGRKEGVYIKVGSASPFSTCL
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 STPASRFLSALGGLWEPGELQLLNVTSALDRGGRVPLPIEGRKEGVYIKV----------
210 220 230 240 250
220 230 240 250 260 270
pF1KB6 KMVASPDSHARCAQGQPPLLSCYDTLAPHFRVDWCNVTLVDKSVPEPADEVPTPGDGILE
::::::::::::::::::::
XP_011 ----------------------------------------DKSVPEPADEVPTPGDGILE
260 270
280 290 300 310 320 330
pF1KB6 HDPFFCPPTEAPDRDFLVDALVTLLVPLLVALLLTLLLAYVMCCRREGRLKRDLATSDIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HDPFFCPPTEAPDRDFLVDALVTLLVPLLVALLLTLLLAYVMCCRREGRLKRDLATSDIQ
280 290 300 310 320 330
340 350 360 370 380
pF1KB6 MVHHCTIHGNTEELRQMAASREVPRPLSTLPMFNVHTGERLPPRVDSAQVPLILDQH
:::::::::::::::::::::::::::::::::::::
XP_011 MVHHCTIHGNTEELRQMAASREVPRPLSTLPMFNVHTVVPGPALTSSSLLCPHHEWHIPP
340 350 360 370 380 390
XP_011 ADSSSWPSWNPGSKQAGRGGGVG
400 410
>>NP_001129169 (OMIM: 600119,608099) alpha-sarcoglycan i (263 aa)
initn: 1326 init1: 1326 opt: 1326 Z-score: 1486.8 bits: 283.3 E(85289): 4.5e-76
Smith-Waterman score: 1526; 68.0% identity (68.0% similar) in 387 aa overlap (1-387:1-263)
10 20 30 40 50 60
pF1KB6 MAETLFWTPLLVVLLAGLGDTEAQQTTLHPLVGRVFVHTLDHETFLSLPEHVAVPPAVHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAETLFWTPLLVVLLAGLGDTEAQQTTLHPLVGRVFVHTLDHETFLSLPEHVAVPPAVHI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TYHAHLQGHPDLPRWLRYTQRSPHHPGFLYGSATPEDRGLQVIEVTAYNRDSFDTTRQRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TYHAHLQGHPDLPRWLRYTQRSPHHPGFLYGSATPEDRGLQVIEVTAYNRDSFDTTRQRL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 VLEIGDPEGPLLPYQAEFLVRSHDAEEVLPSTPASRFLSALGGLWEPGELQLLNVTSALD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLEIGDPEGPLLPYQAEFLVRSHDAEEVLPSTPASRFLSALGGLWEPGELQLLNVTSALD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 RGGRVPLPIEGRKEGVYIKVGSASPFSTCLKMVASPDSHARCAQGQPPLLSCYDTLAPHF
:::::::::::::::
NP_001 RGGRVPLPIEGRKEG---------------------------------------------
190
250 260 270 280 290 300
pF1KB6 RVDWCNVTLVDKSVPEPADEVPTPGDGILEHDPFFCPPTEAPDRDFLVDALVTLLVPLLV
NP_001 ------------------------------------------------------------
310 320 330 340 350 360
pF1KB6 ALLLTLLLAYVMCCRREGRLKRDLATSDIQMVHHCTIHGNTEELRQMAASREVPRPLSTL
:::::::::::::::::::::::::::::::::::::::::
NP_001 -------------------LKRDLATSDIQMVHHCTIHGNTEELRQMAASREVPRPLSTL
200 210 220 230
370 380
pF1KB6 PMFNVHTGERLPPRVDSAQVPLILDQH
:::::::::::::::::::::::::::
NP_001 PMFNVHTGERLPPRVDSAQVPLILDQH
240 250 260
>>XP_011523425 (OMIM: 600119,608099) PREDICTED: alpha-sa (343 aa)
initn: 1326 init1: 1326 opt: 1326 Z-score: 1485.2 bits: 283.4 E(85289): 5.5e-76
Smith-Waterman score: 1388; 66.2% identity (66.2% similar) in 367 aa overlap (1-367:55-297)
10 20 30
pF1KB6 MAETLFWTPLLVVLLAGLGDTEAQQTTLHP
::::::::::::::::::::::::::::::
XP_011 PSCPEPPPSFPPLLPAPCLCHSPGGPGRAAMAETLFWTPLLVVLLAGLGDTEAQQTTLHP
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB6 LVGRVFVHTLDHETFLSLPEHVAVPPAVHITYHAHLQGHPDLPRWLRYTQRSPHHPGFLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LVGRVFVHTLDHETFLSLPEHVAVPPAVHITYHAHLQGHPDLPRWLRYTQRSPHHPGFLY
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB6 GSATPEDRGLQVIEVTAYNRDSFDTTRQRLVLEIGDPEGPLLPYQAEFLVRSHDAEEVLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GSATPEDRGLQVIEVTAYNRDSFDTTRQRLVLEIGDPEGPLLPYQAEFLVRSHDAEEVLP
150 160 170 180 190 200
160 170 180 190 200 210
pF1KB6 STPASRFLSALGGLWEPGELQLLNVTSALDRGGRVPLPIEGRKEGVYIKVGSASPFSTCL
:::::::::::::::::::::::::::::::::::::::::::::
XP_011 STPASRFLSALGGLWEPGELQLLNVTSALDRGGRVPLPIEGRKEG---------------
210 220 230 240
220 230 240 250 260 270
pF1KB6 KMVASPDSHARCAQGQPPLLSCYDTLAPHFRVDWCNVTLVDKSVPEPADEVPTPGDGILE
XP_011 ------------------------------------------------------------
280 290 300 310 320 330
pF1KB6 HDPFFCPPTEAPDRDFLVDALVTLLVPLLVALLLTLLLAYVMCCRREGRLKRDLATSDIQ
:::::::::::
XP_011 -------------------------------------------------LKRDLATSDIQ
250 260
340 350 360 370 380
pF1KB6 MVHHCTIHGNTEELRQMAASREVPRPLSTLPMFNVHTGERLPPRVDSAQVPLILDQH
:::::::::::::::::::::::::::::::::::::
XP_011 MVHHCTIHGNTEELRQMAASREVPRPLSTLPMFNVHTVVPGPALTSSSLLCPHHEWHIPP
270 280 290 300 310 320
XP_011 ADSSSWPSWNPGSKQAGRGGGVG
330 340
>>XP_016868254 (OMIM: 159900,604149) PREDICTED: epsilon- (408 aa)
initn: 703 init1: 554 opt: 1092 Z-score: 1222.6 bits: 235.1 E(85289): 2.3e-61
Smith-Waterman score: 1094; 43.7% identity (70.2% similar) in 389 aa overlap (14-387:1-389)
10 20 30 40 50
pF1KB6 MAETLFWTPLLVVLLAGLGDTEAQQTTLH------PLVGRVFVHTLDHETFLSLPEHVAV
. ::. :. . . .: : .: .:::.:..: : .
XP_016 MAAGMKDVYSIFSKVHSDRNVYPSAGVLFVHVLEREYFKGEFPPYPK
10 20 30 40
60 70 80 90 100 110
pF1KB6 PPAVH---ITYHAHLQGHPDLPRWLRYTQRSPHHPGFLYGSATPEDRGLQ-VIEVTAYNR
: . ::....:.:.:: : :::: ::.:. : :::: : :. : .::.:::::
XP_016 PGEISNDPITFNTNLMGYPDRPGWLRYIQRTPYSDGVLYGSPTAENVGKPTIIEITAYNR
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB6 DSFDTTRQRLVLEIGDPEGPLLPYQAEFLVRSHDAEEVLPSTPASRFLSALGGLWEPGEL
.:.:.:. :...: . : :::::::.... ..::.: : . ::.:. ..:.: .:
XP_016 RTFETARHNLIINIMSAEDFPLPYQAEFFIKNMNVEEMLASEVLGDFLGAVKNVWQPERL
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB6 QLLNVTSALDRGGRVPLPIEGRKEGVYIKVGSASPFSTCLKMVASPDSHARCAQGQPPLL
. .:.::::::::::::::. :::::. ::. :::.::. : .:... ::.: . :..
XP_016 NAINITSALDRGGRVPLPINDLKEGVYVMVGADVPFSSCLREVENPQNQLRCSQEMEPVI
170 180 190 200 210 220
240 250 260 270 280
pF1KB6 SCYDTLAPHFRVDWCNVTLVDKSVPEPADEVPTPGDGILEHDPFFCPPTEA-PDRDFLVD
.: . .: .:::...::::. . . :.::: . ::... .::. .:
XP_016 TCDKKFRTQFYIDWCKISLVDKTKQVSTYQEVIRGEGILPDGGEYKPPSDSLKSRDYYTD
230 240 250 260 270 280
290 300 310 320 330 340
pF1KB6 ALVTLLVPLLVALLLTLLLAYVMCCRREGRLKRDLATSDIQMVHHCTIHGNTEELRQMAA
:.:: :: :::.: :.:::.::::::: ::.. : :::.::: .:. .:.:::.:.
XP_016 FLITLAVPSAVALVLFLILAYIMCCRREGVEKRNMQTPDIQLVHHSAIQKSTKELRDMSK
290 300 310 320 330 340
350 360 370 380
pF1KB6 SREVPRPLSTLPMFNVHTGERLPP----RVDSAQVPLILDQH
.::. ::::::.:. ::: .:: ::...::. :.
XP_016 NREIAWPLSTLPVFHPVTGEIIPPLHTDNYDSTNMPLMQTQQNLPHQTQIPQQQTTGKWY
350 360 370 380 390 400
XP_016 P
>>NP_003910 (OMIM: 159900,604149) epsilon-sarcoglycan is (437 aa)
initn: 726 init1: 554 opt: 1092 Z-score: 1222.1 bits: 235.1 E(85289): 2.5e-61
Smith-Waterman score: 1092; 45.0% identity (71.8% similar) in 369 aa overlap (28-387:50-418)
10 20 30 40 50
pF1KB6 MAETLFWTPLLVVLLAGLGDTEAQQTTLHPLVGRVFVHTLDHETFLSLPEHVAVPPA
..: .: .:::.:..: : . :
NP_003 RGTRRMSPATTGTFLLTVYSIFSKVHSDRNVYPSAGVLFVHVLEREYFKGEFPPYPKPGE
20 30 40 50 60 70
60 70 80 90 100 110
pF1KB6 VH---ITYHAHLQGHPDLPRWLRYTQRSPHHPGFLYGSATPEDRGLQ-VIEVTAYNRDSF
. ::....:.:.:: : :::: ::.:. : :::: : :. : .::.::::: .:
NP_003 ISNDPITFNTNLMGYPDRPGWLRYIQRTPYSDGVLYGSPTAENVGKPTIIEITAYNRRTF
80 90 100 110 120 130
120 130 140 150 160 170
pF1KB6 DTTRQRLVLEIGDPEGPLLPYQAEFLVRSHDAEEVLPSTPASRFLSALGGLWEPGELQLL
.:.:. :...: . : :::::::.... ..::.: : . ::.:. ..:.: .:. .
NP_003 ETARHNLIINIMSAEDFPLPYQAEFFIKNMNVEEMLASEVLGDFLGAVKNVWQPERLNAI
140 150 160 170 180 190
180 190 200 210 220 230
pF1KB6 NVTSALDRGGRVPLPIEGRKEGVYIKVGSASPFSTCLKMVASPDSHARCAQGQPPLLSCY
:.::::::::::::::. :::::. ::. :::.::. : .:... ::.: . :...:
NP_003 NITSALDRGGRVPLPINDLKEGVYVMVGADVPFSSCLREVENPQNQLRCSQEMEPVITCD
200 210 220 230 240 250
240 250 260 270 280 290
pF1KB6 DTLAPHFRVDWCNVTLVDKSVPEPADEVPTPGDGILEHDPFFCPPTEA-PDRDFLVDALV
. .: .:::...::::. . . :.::: . ::... .::. .: :.
NP_003 KKFRTQFYIDWCKISLVDKTKQVSTYQEVIRGEGILPDGGEYKPPSDSLKSRDYYTDFLI
260 270 280 290 300 310
300 310 320 330 340 350
pF1KB6 TLLVPLLVALLLTLLLAYVMCCRREGRLKRDLATSDIQMVHHCTIHGNTEELRQMAASRE
:: :: :::.: :.:::.::::::: ::.. : :::.::: .:. .:.:::.:. .::
NP_003 TLAVPSAVALVLFLILAYIMCCRREGVEKRNMQTPDIQLVHHSAIQKSTKELRDMSKNRE
320 330 340 350 360 370
360 370 380
pF1KB6 VPRPLSTLPMFNVHTGERLPP----RVDSAQVPLILDQH
. ::::::.:. ::: .:: ::...::. :.
NP_003 IAWPLSTLPVFHPVTGEIIPPLHTDNYDSTNMPLMQTQQNLPHQTQIPQQQTTGKWYP
380 390 400 410 420 430
387 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 21:05:56 2016 done: Fri Nov 4 21:05:57 2016
Total Scan time: 9.290 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]