Result of FASTA (ccds) for
pF1KB6517
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6517, 362 aa
1>>>pF1KB6517 362 - 362 aa - 362 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8425+/-0.00104; mu= 16.1128+/- 0.063
mean_var=145.9636+/-27.749, 0's: 0 Z-trim(108.7): 49 B-trim: 34 in 2/52
Lambda= 0.106158
statistics sampled from 10331 (10367) to 10331 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.318), width: 16
Scan time: 2.450
The best scores are: opt bits E(32554)
CCDS7393.1 FAS gene_id:355|Hs108|chr10 ( 335) 2224 352.3 3.5e-97
CCDS7395.1 FAS gene_id:355|Hs108|chr10 ( 220) 1492 240.0 1.5e-63
CCDS7394.1 FAS gene_id:355|Hs108|chr10 ( 314) 1157 188.9 5.2e-48
>>CCDS7393.1 FAS gene_id:355|Hs108|chr10 (335 aa)
initn: 2224 init1: 2224 opt: 2224 Z-score: 1858.3 bits: 352.3 E(32554): 3.5e-97
Smith-Waterman score: 2224; 99.7% identity (100.0% similar) in 326 aa overlap (37-362:10-335)
10 20 30 40 50 60
pF1KB6 QGWHAQGLPHGTNSLLKGGTETSLSTPTRLVVLTSVARLSSKSVNAQVTDINSKGLELRK
.:::::::::::::::::::::::::::::
CCDS73 MLGIWTLLPLVLTSVARLSSKSVNAQVTDINSKGLELRK
10 20 30
70 80 90 100 110 120
pF1KB6 TVTTVETQNLEGLHHDGQFCHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TVTTVETQNLEGLHHDGQFCHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSS
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 KCRRCRLCDEGHGLEVEINCTRTQNTKCRCKPNFFCNSTVCEHCDPCTKCEHGIIKECTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KCRRCRLCDEGHGLEVEINCTRTQNTKCRCKPNFFCNSTVCEHCDPCTKCEHGIIKECTL
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB6 TSNTKCKEEGSRSNLGWLCLLLLPIPLIVWVKRKEVQKTCRKHRKENQGSHESPTLNPET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TSNTKCKEEGSRSNLGWLCLLLLPIPLIVWVKRKEVQKTCRKHRKENQGSHESPTLNPET
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB6 VAINLSDVDLSKYITTIAGVMTLSQVKGFVRKNGVNEAKIDEIKNDNVQDTAEQKVQLLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VAINLSDVDLSKYITTIAGVMTLSQVKGFVRKNGVNEAKIDEIKNDNVQDTAEQKVQLLR
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB6 NWHQLHGKKEAYDTLIKDLKKANLCTLAEKIQTIILKDITSDSENSNFRNEIQSLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 NWHQLHGKKEAYDTLIKDLKKANLCTLAEKIQTIILKDITSDSENSNFRNEIQSLV
280 290 300 310 320 330
>>CCDS7395.1 FAS gene_id:355|Hs108|chr10 (220 aa)
initn: 1492 init1: 1492 opt: 1492 Z-score: 1254.4 bits: 240.0 E(32554): 1.5e-63
Smith-Waterman score: 1492; 99.5% identity (100.0% similar) in 208 aa overlap (37-244:10-217)
10 20 30 40 50 60
pF1KB6 QGWHAQGLPHGTNSLLKGGTETSLSTPTRLVVLTSVARLSSKSVNAQVTDINSKGLELRK
.:::::::::::::::::::::::::::::
CCDS73 MLGIWTLLPLVLTSVARLSSKSVNAQVTDINSKGLELRK
10 20 30
70 80 90 100 110 120
pF1KB6 TVTTVETQNLEGLHHDGQFCHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TVTTVETQNLEGLHHDGQFCHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSS
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 KCRRCRLCDEGHGLEVEINCTRTQNTKCRCKPNFFCNSTVCEHCDPCTKCEHGIIKECTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KCRRCRLCDEGHGLEVEINCTRTQNTKCRCKPNFFCNSTVCEHCDPCTKCEHGIIKECTL
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB6 TSNTKCKEEGSRSNLGWLCLLLLPIPLIVWVKRKEVQKTCRKHRKENQGSHESPTLNPET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TSNTKCKEEGSRSNLGWLCLLLLPIPLIVWVKRKEVQKTCRKHRKENQGSHESPTLNPML
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB6 VAINLSDVDLSKYITTIAGVMTLSQVKGFVRKNGVNEAKIDEIKNDNVQDTAEQKVQLLR
CCDS73 T
220
>>CCDS7394.1 FAS gene_id:355|Hs108|chr10 (314 aa)
initn: 1157 init1: 1157 opt: 1157 Z-score: 975.4 bits: 188.9 E(32554): 5.2e-48
Smith-Waterman score: 2019; 93.3% identity (93.6% similar) in 326 aa overlap (37-362:10-314)
10 20 30 40 50 60
pF1KB6 QGWHAQGLPHGTNSLLKGGTETSLSTPTRLVVLTSVARLSSKSVNAQVTDINSKGLELRK
.:::::::::::::::::::::::::::::
CCDS73 MLGIWTLLPLVLTSVARLSSKSVNAQVTDINSKGLELRK
10 20 30
70 80 90 100 110 120
pF1KB6 TVTTVETQNLEGLHHDGQFCHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TVTTVETQNLEGLHHDGQFCHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSS
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 KCRRCRLCDEGHGLEVEINCTRTQNTKCRCKPNFFCNSTVCEHCDPCTKCEHGIIKECTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KCRRCRLCDEGHGLEVEINCTRTQNTKCRCKPNFFCNSTVCEHCDPCTKCEHGIIKECTL
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB6 TSNTKCKEEGSRSNLGWLCLLLLPIPLIVWVKRKEVQKTCRKHRKENQGSHESPTLNPET
::::::::: ::::::::::::::::::::::::::::::
CCDS73 TSNTKCKEE---------------------VKRKEVQKTCRKHRKENQGSHESPTLNPET
160 170 180 190
250 260 270 280 290 300
pF1KB6 VAINLSDVDLSKYITTIAGVMTLSQVKGFVRKNGVNEAKIDEIKNDNVQDTAEQKVQLLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VAINLSDVDLSKYITTIAGVMTLSQVKGFVRKNGVNEAKIDEIKNDNVQDTAEQKVQLLR
200 210 220 230 240 250
310 320 330 340 350 360
pF1KB6 NWHQLHGKKEAYDTLIKDLKKANLCTLAEKIQTIILKDITSDSENSNFRNEIQSLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 NWHQLHGKKEAYDTLIKDLKKANLCTLAEKIQTIILKDITSDSENSNFRNEIQSLV
260 270 280 290 300 310
362 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 23:12:45 2016 done: Fri Nov 4 23:12:45 2016
Total Scan time: 2.450 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]