FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6515, 360 aa
  1>>>pF1KB6515 360 - 360 aa - 360 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.0284+/-0.000381; mu= -12.9096+/- 0.024
 mean_var=405.7985+/-83.017, 0's: 0 Z-trim(124.9): 1  B-trim: 0 in 0/60
 Lambda= 0.063668
 statistics sampled from 47463 (47465) to 47463 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.819), E-opt: 0.2 (0.557), width:  16
 Scan time:  8.340

The best scores are:                                      opt bits E(85289)
NP_060774 (OMIM: 615920) proline-rich protein 11 [ ( 360) 2449 238.3   2e-62


>>NP_060774 (OMIM: 615920) proline-rich protein 11 [Homo  (360 aa)
 initn: 2449 init1: 2449 opt: 2449  Z-score: 1241.6  bits: 238.3 E(85289): 2e-62
Smith-Waterman score: 2449; 100.0% identity (100.0% similar) in 360 aa overlap (1-360:1-360)

               10        20        30        40        50        60
pF1KB6 MPKFKQRRRKLKAKAERLFKKKEASHFQSKLITPPPPPPSPERVGISSIDISQSRSWLTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MPKFKQRRRKLKAKAERLFKKKEASHFQSKLITPPPPPPSPERVGISSIDISQSRSWLTS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SWNFNFPNIRDAIKLWTNRVWSIYSWCQNCITQSLEVLKDTIFPSRICHRELYSVKQQFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SWNFNFPNIRDAIKLWTNRVWSIYSWCQNCITQSLEVLKDTIFPSRICHRELYSVKQQFC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ILESKLCKLQEALKTISESSSCPSCGQTCHMSGKLTNVPACVLITPGDSKAVLPPTLPQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 ILESKLCKLQEALKTISESSSCPSCGQTCHMSGKLTNVPACVLITPGDSKAVLPPTLPQP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 ASHFPPPPPPPPLPPPPPPLAPVLLRKPSLAKALQAGPLKKDGPMQITVKDLLTVKLKKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 ASHFPPPPPPPPLPPPPPPLAPVLLRKPSLAKALQAGPLKKDGPMQITVKDLLTVKLKKT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 QSLDEKRKLIPSPKARNPLVTVSDLQHVTLKPNSKVLSTRVTNVLITPGKSQMDLRKLLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 QSLDEKRKLIPSPKARNPLVTVSDLQHVTLKPNSKVLSTRVTNVLITPGKSQMDLRKLLR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 KVDVERSPGGTPLTNKENMETGTGLTPVMTQALRRKFQLAHPRSPTPTLPLSTSSFDEQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 KVDVERSPGGTPLTNKENMETGTGLTPVMTQALRRKFQLAHPRSPTPTLPLSTSSFDEQN
              310       320       330       340       350       360




360 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:12:06 2016 done: Fri Nov  4 23:12:07 2016
 Total Scan time:  8.340 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]