FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6515, 360 aa
  1>>>pF1KB6515 360 - 360 aa - 360 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.6008+/-0.000983; mu= -4.1465+/- 0.060
 mean_var=362.2359+/-74.323, 0's: 0 Z-trim(116.9): 5  B-trim: 489 in 1/54
 Lambda= 0.067387
 statistics sampled from 17534 (17537) to 17534 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.813), E-opt: 0.2 (0.539), width:  16
 Scan time:  2.890

The best scores are:                                      opt bits E(32554)
CCDS11614.1 PRR11 gene_id:55771|Hs108|chr17        ( 360) 2449 251.1 1.1e-66


>>CCDS11614.1 PRR11 gene_id:55771|Hs108|chr17             (360 aa)
 initn: 2449 init1: 2449 opt: 2449  Z-score: 1311.0  bits: 251.1 E(32554): 1.1e-66
Smith-Waterman score: 2449; 100.0% identity (100.0% similar) in 360 aa overlap (1-360:1-360)

               10        20        30        40        50        60
pF1KB6 MPKFKQRRRKLKAKAERLFKKKEASHFQSKLITPPPPPPSPERVGISSIDISQSRSWLTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MPKFKQRRRKLKAKAERLFKKKEASHFQSKLITPPPPPPSPERVGISSIDISQSRSWLTS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SWNFNFPNIRDAIKLWTNRVWSIYSWCQNCITQSLEVLKDTIFPSRICHRELYSVKQQFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SWNFNFPNIRDAIKLWTNRVWSIYSWCQNCITQSLEVLKDTIFPSRICHRELYSVKQQFC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ILESKLCKLQEALKTISESSSCPSCGQTCHMSGKLTNVPACVLITPGDSKAVLPPTLPQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ILESKLCKLQEALKTISESSSCPSCGQTCHMSGKLTNVPACVLITPGDSKAVLPPTLPQP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 ASHFPPPPPPPPLPPPPPPLAPVLLRKPSLAKALQAGPLKKDGPMQITVKDLLTVKLKKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ASHFPPPPPPPPLPPPPPPLAPVLLRKPSLAKALQAGPLKKDGPMQITVKDLLTVKLKKT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 QSLDEKRKLIPSPKARNPLVTVSDLQHVTLKPNSKVLSTRVTNVLITPGKSQMDLRKLLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QSLDEKRKLIPSPKARNPLVTVSDLQHVTLKPNSKVLSTRVTNVLITPGKSQMDLRKLLR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 KVDVERSPGGTPLTNKENMETGTGLTPVMTQALRRKFQLAHPRSPTPTLPLSTSSFDEQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KVDVERSPGGTPLTNKENMETGTGLTPVMTQALRRKFQLAHPRSPTPTLPLSTSSFDEQN
              310       320       330       340       350       360




360 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:12:05 2016 done: Fri Nov  4 23:12:06 2016
 Total Scan time:  2.890 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]