Result of FASTA (ccds) for
pF1KB6503
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6503, 358 aa
1>>>pF1KB6503 358 - 358 aa - 358 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1406+/-0.000681; mu= 17.4704+/- 0.041
mean_var=61.2008+/-12.154, 0's: 0 Z-trim(109.4): 6 B-trim: 39 in 1/52
Lambda= 0.163944
statistics sampled from 10854 (10857) to 10854 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.334), width: 16
Scan time: 2.740
The best scores are: opt bits E(32554)
CCDS65156.1 PTPA gene_id:5524|Hs108|chr9 ( 294) 1727 416.5 1.4e-116
CCDS75917.1 PTPA gene_id:5524|Hs108|chr9 ( 288) 1724 415.8 2.3e-116
CCDS6920.1 PTPA gene_id:5524|Hs108|chr9 ( 323) 1724 415.8 2.5e-116
>>CCDS65156.1 PTPA gene_id:5524|Hs108|chr9 (294 aa)
initn: 1720 init1: 1720 opt: 1727 Z-score: 2206.5 bits: 416.5 E(32554): 1.4e-116
Smith-Waterman score: 1880; 82.1% identity (82.1% similar) in 358 aa overlap (1-358:1-294)
10 20 30 40 50 60
pF1KB6 MAEGERQPPPDSSEEAPPATQNFIIPKKEIHTVPDMGKWKRSQAYADYIGFILTLNEGVK
::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MAEGERQPPPDSSEEAPPATQNFIIPKKEIHTVPDMGKWKRSQA----------------
10 20 30 40
70 80 90 100 110 120
pF1KB6 GKKLTFEYRVSEMWNEVHEEKEQAAKQSVSCDECIPLPRAGHCAPSEAIEKLVALLNTLD
::::::::::::
CCDS65 ------------------------------------------------IEKLVALLNTLD
50
130 140 150 160 170 180
pF1KB6 RWIDETPPVDQPSRFGNKAYRTWYAKLDEEAENLVATVVPTHLAAAVPEVAVYLKESVGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 RWIDETPPVDQPSRFGNKAYRTWYAKLDEEAENLVATVVPTHLAAAVPEVAVYLKESVGN
60 70 80 90 100 110
190 200 210 220 230 240
pF1KB6 STRIDYGTGHEAAFAAFLCCLCKIGVLRVDDQIAIVFKVFNRYLEVMRKLQKTYRMEPAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 STRIDYGTGHEAAFAAFLCCLCKIGVLRVDDQIAIVFKVFNRYLEVMRKLQKTYRMEPAG
120 130 140 150 160 170
250 260 270 280 290 300
pF1KB6 SQGVWGLDDFQFLPFIWGSSQLIDHPYLEPRHFVDEKAVNENHKDYMFLECILFITEMKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 SQGVWGLDDFQFLPFIWGSSQLIDHPYLEPRHFVDEKAVNENHKDYMFLECILFITEMKT
180 190 200 210 220 230
310 320 330 340 350
pF1KB6 GPFAEHSNQLWNISAVPSWSKVNQGLIRMYKAECLEKFPVIQHFKFGSLLPIHPVTSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 GPFAEHSNQLWNISAVPSWSKVNQGLIRMYKAECLEKFPVIQHFKFGSLLPIHPVTSG
240 250 260 270 280 290
>>CCDS75917.1 PTPA gene_id:5524|Hs108|chr9 (288 aa)
initn: 1724 init1: 1724 opt: 1724 Z-score: 2202.8 bits: 415.8 E(32554): 2.3e-116
Smith-Waterman score: 1876; 89.2% identity (89.2% similar) in 323 aa overlap (36-358:1-288)
10 20 30 40 50 60
pF1KB6 RQPPPDSSEEAPPATQNFIIPKKEIHTVPDMGKWKRSQAYADYIGFILTLNEGVKGKKLT
::::::::::::::::::::::::::::::
CCDS75 MGKWKRSQAYADYIGFILTLNEGVKGKKLT
10 20 30
70 80 90 100 110 120
pF1KB6 FEYRVSEMWNEVHEEKEQAAKQSVSCDECIPLPRAGHCAPSEAIEKLVALLNTLDRWIDE
::::::: ::::::::::::::::::
CCDS75 FEYRVSE-----------------------------------AIEKLVALLNTLDRWIDE
40 50
130 140 150 160 170 180
pF1KB6 TPPVDQPSRFGNKAYRTWYAKLDEEAENLVATVVPTHLAAAVPEVAVYLKESVGNSTRID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 TPPVDQPSRFGNKAYRTWYAKLDEEAENLVATVVPTHLAAAVPEVAVYLKESVGNSTRID
60 70 80 90 100 110
190 200 210 220 230 240
pF1KB6 YGTGHEAAFAAFLCCLCKIGVLRVDDQIAIVFKVFNRYLEVMRKLQKTYRMEPAGSQGVW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 YGTGHEAAFAAFLCCLCKIGVLRVDDQIAIVFKVFNRYLEVMRKLQKTYRMEPAGSQGVW
120 130 140 150 160 170
250 260 270 280 290 300
pF1KB6 GLDDFQFLPFIWGSSQLIDHPYLEPRHFVDEKAVNENHKDYMFLECILFITEMKTGPFAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 GLDDFQFLPFIWGSSQLIDHPYLEPRHFVDEKAVNENHKDYMFLECILFITEMKTGPFAE
180 190 200 210 220 230
310 320 330 340 350
pF1KB6 HSNQLWNISAVPSWSKVNQGLIRMYKAECLEKFPVIQHFKFGSLLPIHPVTSG
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 HSNQLWNISAVPSWSKVNQGLIRMYKAECLEKFPVIQHFKFGSLLPIHPVTSG
240 250 260 270 280
>>CCDS6920.1 PTPA gene_id:5524|Hs108|chr9 (323 aa)
initn: 1724 init1: 1724 opt: 1724 Z-score: 2202.0 bits: 415.8 E(32554): 2.5e-116
Smith-Waterman score: 2120; 90.2% identity (90.2% similar) in 358 aa overlap (1-358:1-323)
10 20 30 40 50 60
pF1KB6 MAEGERQPPPDSSEEAPPATQNFIIPKKEIHTVPDMGKWKRSQAYADYIGFILTLNEGVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MAEGERQPPPDSSEEAPPATQNFIIPKKEIHTVPDMGKWKRSQAYADYIGFILTLNEGVK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 GKKLTFEYRVSEMWNEVHEEKEQAAKQSVSCDECIPLPRAGHCAPSEAIEKLVALLNTLD
:::::::::::: :::::::::::::
CCDS69 GKKLTFEYRVSE-----------------------------------AIEKLVALLNTLD
70 80
130 140 150 160 170 180
pF1KB6 RWIDETPPVDQPSRFGNKAYRTWYAKLDEEAENLVATVVPTHLAAAVPEVAVYLKESVGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 RWIDETPPVDQPSRFGNKAYRTWYAKLDEEAENLVATVVPTHLAAAVPEVAVYLKESVGN
90 100 110 120 130 140
190 200 210 220 230 240
pF1KB6 STRIDYGTGHEAAFAAFLCCLCKIGVLRVDDQIAIVFKVFNRYLEVMRKLQKTYRMEPAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 STRIDYGTGHEAAFAAFLCCLCKIGVLRVDDQIAIVFKVFNRYLEVMRKLQKTYRMEPAG
150 160 170 180 190 200
250 260 270 280 290 300
pF1KB6 SQGVWGLDDFQFLPFIWGSSQLIDHPYLEPRHFVDEKAVNENHKDYMFLECILFITEMKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 SQGVWGLDDFQFLPFIWGSSQLIDHPYLEPRHFVDEKAVNENHKDYMFLECILFITEMKT
210 220 230 240 250 260
310 320 330 340 350
pF1KB6 GPFAEHSNQLWNISAVPSWSKVNQGLIRMYKAECLEKFPVIQHFKFGSLLPIHPVTSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 GPFAEHSNQLWNISAVPSWSKVNQGLIRMYKAECLEKFPVIQHFKFGSLLPIHPVTSG
270 280 290 300 310 320
358 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 01:16:50 2016 done: Sat Nov 5 01:16:50 2016
Total Scan time: 2.740 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]