Result of FASTA (omim) for
pF1KB6495
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6495, 285 aa
1>>>pF1KB6495 285 - 285 aa - 285 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0012+/-0.000387; mu= 16.4518+/- 0.025
mean_var=220.7725+/-47.560, 0's: 0 Z-trim(119.9): 329 B-trim: 3436 in 2/53
Lambda= 0.086318
statistics sampled from 33942 (34374) to 33942 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.403), width: 16
Scan time: 7.920
The best scores are: opt bits E(85289)
NP_004490 (OMIM: 602688) heterogeneous nuclear rib ( 285) 1924 251.8 1.1e-66
NP_112556 (OMIM: 602688) heterogeneous nuclear rib ( 332) 1800 236.4 5.4e-62
NP_001003810 (OMIM: 601324) heterogeneous nuclear ( 287) 1172 158.1 1.7e-38
NP_112737 (OMIM: 601324) heterogeneous nuclear rib ( 336) 1116 151.3 2.4e-36
NP_001193929 (OMIM: 607137,609115) heterogeneous n ( 363) 1081 147.0 5.1e-35
NP_002129 (OMIM: 601324) heterogeneous nuclear rib ( 306) 1065 144.9 1.8e-34
NP_112740 (OMIM: 607137,609115) heterogeneous nucl ( 420) 1016 139.0 1.5e-32
NP_112738 (OMIM: 601324) heterogeneous nuclear rib ( 355) 1009 138.0 2.5e-32
NP_001309180 (OMIM: 607897) RNA-binding protein Mu ( 255) 633 90.9 2.6e-18
XP_016879637 (OMIM: 607897) PREDICTED: RNA-binding ( 295) 633 91.0 2.8e-18
NP_620412 (OMIM: 607897) RNA-binding protein Musas ( 328) 633 91.1 3e-18
XP_005257072 (OMIM: 607897) PREDICTED: RNA-binding ( 346) 633 91.1 3.1e-18
XP_005257071 (OMIM: 607897) PREDICTED: RNA-binding ( 346) 633 91.1 3.1e-18
NP_001317180 (OMIM: 605372) heterogeneous nuclear ( 331) 611 88.4 2e-17
NP_001317179 (OMIM: 605372) heterogeneous nuclear ( 331) 611 88.4 2e-17
NP_001317178 (OMIM: 605372) heterogeneous nuclear ( 378) 611 88.5 2.2e-17
NP_919223 (OMIM: 605372) heterogeneous nuclear rib ( 378) 611 88.5 2.2e-17
XP_016874740 (OMIM: 164017,615424,615426) PREDICTE ( 295) 598 86.7 5.8e-17
XP_016867598 (OMIM: 600124,615422) PREDICTED: hete ( 341) 597 86.6 6.8e-17
NP_002128 (OMIM: 600124,615422) heterogeneous nucl ( 341) 597 86.6 6.8e-17
XP_016867599 (OMIM: 600124,615422) PREDICTED: hete ( 341) 597 86.6 6.8e-17
XP_005249786 (OMIM: 600124,615422) PREDICTED: hete ( 353) 597 86.7 7e-17
NP_112533 (OMIM: 600124,615422) heterogeneous nucl ( 353) 597 86.7 7e-17
NP_733839 (OMIM: 607897) RNA-binding protein Musas ( 251) 589 85.4 1.2e-16
NP_002127 (OMIM: 164017,615424,615426) heterogeneo ( 320) 590 85.7 1.2e-16
XP_005268883 (OMIM: 164017,615424,615426) PREDICTE ( 372) 590 85.8 1.3e-16
NP_112420 (OMIM: 164017,615424,615426) heterogeneo ( 372) 590 85.8 1.3e-16
NP_001317176 (OMIM: 605372) heterogeneous nuclear ( 356) 589 85.7 1.4e-16
NP_001317177 (OMIM: 605372) heterogeneous nuclear ( 356) 589 85.7 1.4e-16
NP_001309179 (OMIM: 607897) RNA-binding protein Mu ( 324) 582 84.7 2.4e-16
XP_011536665 (OMIM: 603328) PREDICTED: RNA-binding ( 332) 556 81.5 2.3e-15
XP_011536664 (OMIM: 603328) PREDICTED: RNA-binding ( 343) 556 81.5 2.4e-15
XP_006719466 (OMIM: 603328) PREDICTED: RNA-binding ( 351) 556 81.6 2.4e-15
NP_002433 (OMIM: 603328) RNA-binding protein Musas ( 362) 556 81.6 2.4e-15
XP_011536663 (OMIM: 603328) PREDICTED: RNA-binding ( 362) 556 81.6 2.4e-15
NP_006796 (OMIM: 609409) heterogeneous nuclear rib ( 305) 493 73.6 5.1e-13
NP_031401 (OMIM: 605078,612069) TAR DNA-binding pr ( 414) 406 63.0 1.1e-09
XP_016856353 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 406 63.0 1.1e-09
XP_016856357 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 406 63.0 1.1e-09
XP_016856356 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 406 63.0 1.1e-09
XP_016856354 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 406 63.0 1.1e-09
XP_016856352 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 406 63.0 1.1e-09
XP_016856355 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 406 63.0 1.1e-09
XP_016879636 (OMIM: 607897) PREDICTED: RNA-binding ( 315) 390 60.8 3.8e-09
XP_016882071 (OMIM: 607430) PREDICTED: DAZ-associa ( 327) 312 51.1 3.2e-06
XP_011526209 (OMIM: 607430) PREDICTED: DAZ-associa ( 548) 314 51.7 3.5e-06
XP_011526208 (OMIM: 607430) PREDICTED: DAZ-associa ( 549) 314 51.7 3.6e-06
XP_005259588 (OMIM: 607430) PREDICTED: DAZ-associa ( 406) 311 51.2 3.9e-06
XP_011526211 (OMIM: 607430) PREDICTED: DAZ-associa ( 521) 312 51.5 4.1e-06
XP_011526210 (OMIM: 607430) PREDICTED: DAZ-associa ( 521) 312 51.5 4.1e-06
>>NP_004490 (OMIM: 602688) heterogeneous nuclear ribonuc (285 aa)
initn: 1924 init1: 1924 opt: 1924 Z-score: 1318.1 bits: 251.8 E(85289): 1.1e-66
Smith-Waterman score: 1924; 100.0% identity (100.0% similar) in 285 aa overlap (1-285:1-285)
10 20 30 40 50 60
pF1KB6 MSEAGEEQPMETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MSEAGEEQPMETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 NASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 NASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 AASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 AASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQY
190 200 210 220 230 240
250 260 270 280
pF1KB6 GSGGRGNRNRGNRGSGGGGGGGGQGSTNYGKSQRRGGHQNNYKPY
:::::::::::::::::::::::::::::::::::::::::::::
NP_004 GSGGRGNRNRGNRGSGGGGGGGGQGSTNYGKSQRRGGHQNNYKPY
250 260 270 280
>>NP_112556 (OMIM: 602688) heterogeneous nuclear ribonuc (332 aa)
initn: 2378 init1: 1774 opt: 1800 Z-score: 1234.0 bits: 236.4 E(85289): 5.4e-62
Smith-Waterman score: 1800; 94.1% identity (97.2% similar) in 288 aa overlap (1-284:1-288)
10 20 30 40 50 60
pF1KB6 MSEAGEEQPMETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 MSEAGEEQPMETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 NASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 NASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 AASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 AASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQY
190 200 210 220 230 240
250 260 270 280
pF1KB6 GSGGRGNRNRGNRGSGGGGGGGGQGST---NYGKSQRRG-GHQNNYKPY
::::::::::::::::::::::::... .::. .: :.:..: :
NP_112 GSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYGGYDYSPYGY
250 260 270 280 290 300
NP_112 YGYGPGYDYSQGSTNYGKSQRRGGHQNNYKPY
310 320 330
>>NP_001003810 (OMIM: 601324) heterogeneous nuclear ribo (287 aa)
initn: 1135 init1: 561 opt: 1172 Z-score: 811.9 bits: 158.1 E(85289): 1.7e-38
Smith-Waterman score: 1172; 64.6% identity (84.8% similar) in 277 aa overlap (12-285:22-287)
10 20 30 40 50
pF1KB6 MSEAGEEQPMETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSG
..: :.. :. .: . :.::.::..:.: :... .:
NP_001 MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAA-AAAGSGAGTGGGTASGGTEGG
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 NQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRS
. . .:: .:.::::::: ::::.:::::::.::::::::.:::::::::.:.:: ::::
NP_001 SAE-SEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRS
60 70 80 90 100 110
120 130 140 150 160
pF1KB6 RGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMK-KDPVKKIFVGGLNPEATEEK
:::::.:::.. ::.::.:::::.:.:.:::::.: ::: :.::::::::::.:.. :::
NP_001 RGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEK
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB6 IREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVA
:::::: :::.:.:::::: : :::::: ::::::::::::..:::.:.:. ::::::::
NP_001 IREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB6 QPKEVYQQQQ-YGS-GGRGNRNRGNRGSGGGGGGGGQGSTNYGKSQRRGGHQNNYKPY
. :: ::::: .:: :: ..: :: ::. ...::: .:::::::.::::
NP_001 MSKEQYQQQQQWGSRGGFAGRARGR---------GGDQQSGYGKVSRRGGHQNSYKPY
240 250 260 270 280
>>NP_112737 (OMIM: 601324) heterogeneous nuclear ribonuc (336 aa)
initn: 1052 init1: 561 opt: 1116 Z-score: 773.6 bits: 151.3 E(85289): 2.4e-36
Smith-Waterman score: 1116; 63.2% identity (84.1% similar) in 277 aa overlap (12-285:22-293)
10 20 30 40 50
pF1KB6 MSEAGEEQPMETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSG
..: :.. :. .: . :.::.::..:.: :... .:
NP_112 MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAA-AAAGSGAGTGGGTASGGTEGG
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 NQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRS
. . .:: .:.::::::: ::::.:::::::.::::::::.:::::::::.:.:: ::::
NP_112 SAE-SEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRS
60 70 80 90 100 110
120 130 140 150 160
pF1KB6 RGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMK-KDPVKKIFVGGLNPEATEEK
:::::.:::.. ::.::.:::::.:.:.:::::.: ::: :.::::::::::.:.. :::
NP_112 RGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEK
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB6 IREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVA
:::::: :::.:.:::::: : :::::: ::::::::::::..:::.:.:. ::::::::
NP_112 IREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB6 QPKEVYQQQQ-YGS-GGRGNRNRGNRGSGGGGGGGGQGSTNYGKSQRRGGHQNNYKPY
. :: ::::: .:: :: ..: :: :: :: . . .:: .:: .: :.. : . :
NP_112 MSKEQYQQQQQWGSRGGFAGRARG-RG-GGPSQNWNQGYSNYW-NQGYGNYGYNSQGYGG
240 250 260 270 280 290
NP_112 YGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY
300 310 320 330
>>NP_001193929 (OMIM: 607137,609115) heterogeneous nucle (363 aa)
initn: 589 init1: 525 opt: 1081 Z-score: 749.7 bits: 147.0 E(85289): 5.1e-35
Smith-Waterman score: 1081; 69.2% identity (86.8% similar) in 234 aa overlap (55-285:133-363)
30 40 50 60 70 80
pF1KB6 EGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKK
:::..::::::..: ::::.::::::::::
NP_001 AATRTARQHPPADSSVTMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKK
110 120 130 140 150 160
90 100 110 120 130 140
pF1KB6 DLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK
:: .:...:::::::::: :: :::::::::.::::::::.:::. :::.:::..::::.
NP_001 DLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKR
170 180 190 200 210 220
150 160 170 180 190 200
pF1KB6 AMAMK-KDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFK
: :.: :.: ::.:::::.:...::.:.:::: ::::: :::::: : :.:::: :::.
NP_001 AKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYT
230 240 250 260 270 280
210 220 230 240 250 260
pF1KB6 EEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVY-QQQQYGSGGRGNRNRGNRGSGGGGGGG
.::::::.::...: ....::::::::::::: :::: .:::: :.:: : : :
NP_001 DEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGA-AAGGRG-GTRGRGR
290 300 310 320 330 340
270 280
pF1KB6 GQGSTNYGKSQRRGG-HQNNYKPY
:: :: :::..: :: :::::.::
NP_001 GQQST-YGKASRGGGNHQNNYQPY
350 360
>>NP_002129 (OMIM: 601324) heterogeneous nuclear ribonuc (306 aa)
initn: 1075 init1: 474 opt: 1065 Z-score: 739.7 bits: 144.9 E(85289): 1.8e-34
Smith-Waterman score: 1124; 60.5% identity (79.4% similar) in 296 aa overlap (12-285:22-306)
10 20 30 40 50
pF1KB6 MSEAGEEQPMETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSG
..: :.. :. .: . :.::.::..:.: :... .:
NP_002 MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAA-AAAGSGAGTGGGTASGGTEGG
10 20 30 40 50
60 70 80 90
pF1KB6 NQNGAEGDQINASKNEEDAG-------------------KMFVGGLSWDTSKKDLKDYFT
. . .:: .:.::::::: : :::.:::::::.::::::::.
NP_002 SAE-SEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFS
60 70 80 90 100 110
100 110 120 130 140 150
pF1KB6 KFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMK-K
:::::::::.:.:: :::::::::.:::.. ::.::.:::::.:.:.:::::.: ::: :
NP_002 KFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB6 DPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKK
.::::::::::.:.. ::::::::: :::.:.:::::: : :::::: ::::::::::::
NP_002 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK
180 190 200 210 220 230
220 230 240 250 260
pF1KB6 VLEKKFHTVSGSKCEIKVAQPKEVYQQQQ-YGS-GGRGNRNRGNRGSGGGGGGGGQGSTN
..:::.:.:. ::::::::. :: ::::: .:: :: ..: :: ::. ...
NP_002 IMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGR---------GGDQQSG
240 250 260 270 280
270 280
pF1KB6 YGKSQRRGGHQNNYKPY
::: .:::::::.::::
NP_002 YGKVSRRGGHQNSYKPY
290 300
>>NP_112740 (OMIM: 607137,609115) heterogeneous nuclear (420 aa)
initn: 986 init1: 513 opt: 1016 Z-score: 705.4 bits: 139.0 E(85289): 1.5e-32
Smith-Waterman score: 1016; 65.0% identity (83.8% similar) in 234 aa overlap (55-282:133-365)
30 40 50 60 70 80
pF1KB6 EGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKK
:::..::::::..: ::::.::::::::::
NP_112 AATRTARQHPPADSSVTMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKK
110 120 130 140 150 160
90 100 110 120 130 140
pF1KB6 DLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK
:: .:...:::::::::: :: :::::::::.::::::::.:::. :::.:::..::::.
NP_112 DLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKR
170 180 190 200 210 220
150 160 170 180 190 200
pF1KB6 AMAMK-KDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFK
: :.: :.: ::.:::::.:...::.:.:::: ::::: :::::: : :.:::: :::.
NP_112 AKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYT
230 240 250 260 270 280
210 220 230 240 250 260
pF1KB6 EEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVY-QQQQYGSGGRGNRNRGNRGSGGGGGGG
.::::::.::...: ....::::::::::::: :::: .:::: : :. : : :
NP_112 DEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQ
290 300 310 320 330 340
270 280
pF1KB6 GQ----GSTNYGKSQRRGGHQNNYKPY
:: : .:: .: :.... :
NP_112 GQNWNQGFNNY-YDQGYGNYNSAYGGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQS
350 360 370 380 390 400
>>NP_112738 (OMIM: 601324) heterogeneous nuclear ribonuc (355 aa)
initn: 992 init1: 505 opt: 1009 Z-score: 701.4 bits: 138.0 E(85289): 2.5e-32
Smith-Waterman score: 1068; 59.1% identity (78.7% similar) in 296 aa overlap (12-285:22-312)
10 20 30 40 50
pF1KB6 MSEAGEEQPMETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSG
..: :.. :. .: . :.::.::..:.: :... .:
NP_112 MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAA-AAAGSGAGTGGGTASGGTEGG
10 20 30 40 50
60 70 80 90
pF1KB6 NQNGAEGDQINASKNEEDAG-------------------KMFVGGLSWDTSKKDLKDYFT
. . .:: .:.::::::: : :::.:::::::.::::::::.
NP_112 SAE-SEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFS
60 70 80 90 100 110
100 110 120 130 140 150
pF1KB6 KFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMK-K
:::::::::.:.:: :::::::::.:::.. ::.::.:::::.:.:.:::::.: ::: :
NP_112 KFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB6 DPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKK
.::::::::::.:.. ::::::::: :::.:.:::::: : :::::: ::::::::::::
NP_112 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK
180 190 200 210 220 230
220 230 240 250 260
pF1KB6 VLEKKFHTVSGSKCEIKVAQPKEVYQQQQ-YGS-GGRGNRNRGNRGSGGGGGGGGQGSTN
..:::.:.:. ::::::::. :: ::::: .:: :: ..: :: :: :: . . .:: .:
NP_112 IMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARG-RG-GGPSQNWNQGYSN
240 250 260 270 280 290
270 280
pF1KB6 YGKSQRRGGHQNNYKPY
: .: :.. : . :
NP_112 YW-NQGYGNYGYNSQGYGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY
300 310 320 330 340 350
>>NP_001309180 (OMIM: 607897) RNA-binding protein Musash (255 aa)
initn: 624 init1: 389 opt: 633 Z-score: 449.7 bits: 90.9 E(85289): 2.6e-18
Smith-Waterman score: 633; 44.6% identity (69.3% similar) in 231 aa overlap (53-276:4-229)
30 40 50 60 70 80
pF1KB6 VPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTS
::..: . .:. ...: ::::.:::::.::
NP_001 MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTS
10 20 30
90 100 110 120 130 140
pF1KB6 KKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDP
.:.:::.::::. .: . ::.: :::::::. : : :::.::: : .:.::...:::
NP_001 PDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDP
40 50 60 70 80 90
150 160 170 180 190
pF1KB6 KKAMAMKKDP-----VKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGF
: :. . .: .::::::::. ... : ...:: .::..: : .: :..:::
NP_001 KVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGF
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB6 VFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGG
:.::..:. :.:: : .:: .... : : ::::::. . : :: : :: .
NP_001 GFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVM----FPPGTRG-RARGLPYTMD
160 170 180 190 200
260 270 280
pF1KB6 GG--GGGGQGSTNYGKSQRRGGHQNNYKPY
. : : : :. . ::
NP_001 AFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQFPDYLPVSQDIIFIN
210 220 230 240 250
>>XP_016879637 (OMIM: 607897) PREDICTED: RNA-binding pro (295 aa)
initn: 624 init1: 389 opt: 633 Z-score: 449.1 bits: 91.0 E(85289): 2.8e-18
Smith-Waterman score: 633; 44.6% identity (69.3% similar) in 231 aa overlap (53-276:4-229)
30 40 50 60 70 80
pF1KB6 VPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTS
::..: . .:. ...: ::::.:::::.::
XP_016 MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTS
10 20 30
90 100 110 120 130 140
pF1KB6 KKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDP
.:.:::.::::. .: . ::.: :::::::. : : :::.::: : .:.::...:::
XP_016 PDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDP
40 50 60 70 80 90
150 160 170 180 190
pF1KB6 KKAMAMKKDP-----VKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGF
: :. . .: .::::::::. ... : ...:: .::..: : .: :..:::
XP_016 KVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGF
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB6 VFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGG
:.::..:. :.:: : .:: .... : : ::::::. . : :: : :: .
XP_016 GFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVM----FPPGTRG-RARGLPYTMD
160 170 180 190 200
260 270 280
pF1KB6 GG--GGGGQGSTNYGKSQRRGGHQNNYKPY
. : : : :. . ::
XP_016 AFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQFPGFPAAAYGPVAAAAVAAARGSGSAHL
210 220 230 240 250 260
285 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 21:03:26 2016 done: Fri Nov 4 21:03:27 2016
Total Scan time: 7.920 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]